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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1399 fasta sequence
[GAAAAAATAAAACACATTATCTGTCCAAAAAGTATGAAAACGACTCTGTACTGGTCTGTGCATTAGAGAAGTCAGGATTTGACTACTCAATTTTAAGAGTTGCTGTAGGATACAAGAAAGGACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACACAGATAGCGAGATNTTACGCACACGAGAGGGATGTTTGTCATGTGGTCTGGAAACCGTGTGCCTCGGGTTATACAGACAACCCAACGGAGCTTCTCACATGTGGACGTGATCAAATGGTCAAGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCACGTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCCCATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTATTCCGTTGGAGCTGGTCAGATGCACCTACTAACATAACACCTGAAAACCAAGGGCATTCTATGCTGATTTTTTCAATGTTGTTTGTTCCTAATTCTCCTGGGCTAGTGATTACAGTCAGCCAAGATAGAGTTCTGATTGTGTGGGAGTTAGTTGAAGAATCGCTCCCGTTAGTTGTTTTGCGACTACCGACACTTTCTGCAGGGGTGTTTTCTCTAGCTCAGTCTTCGTTTAGTAATAGCCCTTTAGTCGCAGGGCTTTCAGATGGATCTATTTTGTTCTGGAAAGTTTATTCACCGAATATGAATGATGGTAACAATTCCTTTGACAATCGAAGTAAGGACAAATCTATTTCAATATCACCTCGGGGATCTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCACGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCATCACAAAAATGAACAGATAGAAACTAAAAGTCATTTGAAACCTGATAATTCTGCACTCTTATCAAATACAACTGTAGAGGAAAATGTCAGGTGCAATACAGAATCCGAGGCTAAGTTTCCTTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCCTCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGGGGAAGATTGGGAAACCCTGATTCGTAGTGATATAGCATTCCGCCCTGTCAGTAAAACTAAACAGTCATCAGCTGATCCAGTTCCTGATACCTT]
[+] EMBL CD157649 [GAAAAAATAAAACACATTATCTGTCCAAAAAGTATGAAAACGACTCTGTACTGGTCTGTGCATTAGAGAAGTCAGGATTTGACTACTCAATTTTAAGAGTTGCTGTAGGATACAAGAAAGGACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACACAGATAGCGAGATNTTACGC ]
[+] EMBL CD195593 [ ACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACACAGATAGCGAGATTTTACGCACACGAGAGGGATGTTTGTCATGTGGTCTGGAAACCGTGTGCCTCGGGTTATACAGACAACCCAACGGAGCTTCTCACATGTGGACGTGATCAAATGGTCAAGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCACGTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCCCATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTA ]
[-] EMBL CD157722 [ ATGTGGACGTGATCAAATGGTCAAGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCACGTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCCCATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTATTCCGTTGGAGCTGGTCAGATGC ]
[+] EMBL CD125835 [ TTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGGGATTACGGGGTGAATTATTCCGTTGGAGCTGCTCAGATGCACCTACTAACATAACACCTGAAAACCAAGGGCATTCTATGCTGATTTTTTCAATGTTGTTTGTTCCTAATTCTCCTGGGCTAGTGATTACAGTCAGCCAAGATAGAGTTCTGATTGTGTGGGAGTTAGTTGAAGAATCGCTCCCGTTAGTTGTTTTGCGACTACCGACACTTTCTGCAGGGGTGTTTTCTCTAGCTCAGTCTTCGTTTAGTAATAGCCCTTTAGTCGCAGGGCTTTCAGATGGATCTATTTTGTTCTGGAAAGTTTATTCACCGAATATGAATGATGGTAACAATTCCTTTGACAATCGAAGTAAGGACAAATCTATTTCAATATCACCTCGGGGATCTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAA ]
[+] EMBL CD159459 [ TCTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCACGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCATCACAAAAATGAACAGATAGAAACTAAAAGTCATTTGAAACCTGATAATTCTGCACTCTTATCAAATACAACTGTAGAGGAAAATGTCAGGTGCAATACAGAATCCGAGGCTAAGTTTCCTTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCCTCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGGGGAAGATTGGGAA ]
[-] EMBL CD159493 [ CTCAGTCATCCCCTATAACCGCTCTTGCTTGGCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGAGATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCACGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCATCACAAAAATGAACAGATAGAAACTAAAAGTCATTT ]
[+] EMBL CD067162 [ AAGTTTCCTTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCCTCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGAGGAAGATTGGAAAACCCTGATTCGTAGTGATATAGCATTCCGCCCTGTCAGTAAAACTAAACAGTCATCAGCTGATCCAGTTCCTGATACCTT]
consensusID : consensus_9301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 366 fasta sequence
[AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCTGATCAACGGCATACAAACTAAGTAATAGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCCAAAATTTCTTACTGAGCGAAATTCAACTATGTGAATATAGTGATGACCTAATATTCTATTACACGAACATGACTAGAAATACGACAGACTGGATACAACTAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTATGACCAAAAAAATTACGCAGAAAACATCTCTAACTAGTGACTTCGATAGTTACTCACCTTGACCATTTGATCACGTCCACATGTGAGAAGCTCCGTTGG]
[+] EMBL CD122784 [AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCTGATCAACGGCATACAAACTAAGTAATAGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCCAAAATTTCTTACTGAGCGAAATTCAACTATGTGAATATAGTGATGACCTAATATTCTATTACACGAACATGACTAGAAATACGACAGACTGGATACAACTAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTATGACCAAAAAAATTACGCAGAAAACATCTCTAACTAGTGACTTCGATAGTTACTCACCTTGACCATTTGATCACGTCCACATGTGAGAAGCTCCGTTGG]
[+] EMBL CD123022 [AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCCGATCAACGGCATACAAACTAAGTAATAGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCCAAAATTTCTTACTGAGCGAAATTCAACTATGTGAATATAGTGATGACCTAATATTCTATTACACGAACATGACTAGAAATACGACAGACTGGATACAACTAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTATGACCAAAAAAATTACGCAGAAAACATCTCTAACTAGTGACTTCGATAGTTACTCACCTTGACCATTTGATCACGTCCACATGTGAGAAGCTCCGTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9301#0 GAAAAAATAAAACACATTATCTGTCCAAAAAGTATGAAAACGACTCTGTACTGGTCTGTG 60
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 CATTAGAGAAGTCAGGATTTGACTACTCAATTTTAAGAGTTGCTGTAGGATACAAGAAAG 120
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 GACTGGTCGGCGTTTATATGTTCAAACCATCAGACATCTCATCAGCTTCAAATCTCACAC 180
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 AGATAGCGAGATNTTACGCACACGAGAGGGATGTTTGTCATGTGGTCTGGAAACCGTGTG 240
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 CCTCGGGTTATACAGACAACCCAACGGAGCTTCTCACATGTGGACGTGATCAAATGGTCA 300
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 AGGTATGGAATGTATCCACCTCCGAATGCTGTTTTTGTACCAAAGTTCCTGGTCAGTCAC 360
consensus_9301#1 --AACTAGTATTCGCATAACAATATATATTGATATTCTTTTACTGTTTCTGATCAACGGC 58
* * ** * * ** ** * ** * * *** *** *** *
consensus_9301#0 GTTATCATGCAAATGATTCTGGAAAACGTTCAAATCAGAAAAATAATGTTAGCGGAGCCC 420
consensus_9301#1 AT-ACAAACTAAGTAAT----AGAGATACTTGAAATGTATAGATACTTATTGTAAAGCCC 113
* * * ** * ** * * * ** * * *** * * * *****
consensus_9301#0 CATGGATATCTGCTTGTTACACCACAGGGAAGAATTCGATGGTGAATATCTTATTTTCGG 480
consensus_9301#1 AA--AATTTCT-----------TACTGAGCGAAATTCAAC------TATGTGAATATAGT 154
* ** *** ** * * ***** * *** * * * * *
consensus_9301#0 GATTACGGGGTGAATTATTCCGTTGGAGCTGGTCAGATGCACCTACTAACATAACAC--C 538
consensus_9301#1 GATGACCTAATATTCTATTACAC-GAACATGACTAGAAATACG-ACAGACTGGATACAAC 212
*** ** * **** * * * ** *** ** ** ** * ** *
consensus_9301#0 TGAAAACCAAGGGCATTCTATGCTGATTTTTTCAATGTTGTTTGTTCCTAATTCTCCTGG 598
consensus_9301#1 TAAGAGTGGAAAACTATATTATTGGATTGTGACAAAGATAATCAGTTTAAATTTAT---G 269
* * * * * * * **** * *** * * * * **** *
consensus_9301#0 GCTAGTGATTACAGTCAGCCAAGATAGAGTTCTGATTGTGTGGGAGTTAGTTGAAGAATC 658
consensus_9301#1 ACCAAAAA----AATTACGCAGAAAACATCTCTAACT-------AGTGACTTCGATAGTT 318
* * * * * * ** * * * *** * * *** * ** * * *
consensus_9301#0 GCTCCCGTTAGTTGTTTTGCGACTACCGACACTTTCTGCAGGGGTGTTTTCTCTAGCTCA 718
consensus_9301#1 ACTCACCTTGACCATTTGATCAC-GTCCACA-TGTGAGAAGCTCCGTTGG---------- 366
*** * ** *** ** * *** * * * ** ***
consensus_9301#0 GTCTTCGTTTAGTAATAGCCCTTTAGTCGCAGGGCTTTCAGATGGATCTATTTTGTTCTG 778
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 GAAAGTTTATTCACCGAATATGAATGATGGTAACAATTCCTTTGACAATCGAAGTAAGGA 838
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 CAAATCTATTTCAATATCACCTCGGGGATCTCAGTCATCCCCTATAACCGCTCTTGCTTG 898
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 GCATCCTTTACCGCAATACGAAAACATCCTTGCCTATGGGACCGAATCCGGTTGTGTGGA 958
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 GATAGTCGATATTAACAAGCTACAGAAAATACAGAATCGGAAGCCGAAACCACAGTTGCA 1018
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 CGCGTTTGGTTCGACCGTATACCGAGTTGCTTGGGGGCCTATAATATTTACGGGTTCGCA 1078
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 TCACAAAAATGAACAGATAGAAACTAAAAGTCATTTGAAACCTGATAATTCTGCACTCTT 1138
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 ATCAAATACAACTGTAGAGGAAAATGTCAGGTGCAATACAGAATCCGAGGCTAAGTTTCC 1198
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 TTTCTATGTTTATAGTGTAAGTAAAGGAAAAATCCACTGTCATTTTGGAGGCGGTCGCCC 1258
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 TCCAGTTGAAGTTAGCATGAAGTTTCCTTCTCCTCCAAATACCACTGGGGAAGATTGGGA 1318
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 AACCCTGATTCGTAGTGATATAGCATTCCGCCCTGTCAGTAAAACTAAACAGTCATCAGC 1378
consensus_9301#1 ------------------------------------------------------------
consensus_9301#0 TGATCCAGTTCCTGATACCTT 1399
consensus_9301#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||