cluster # 9305

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Schistosoma mansoni
cluster # 9305 cluster # 9305 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9305#0 length = 1047 sequences # 4

consensus_9305#1 length = 522 sequences # 2
consensus_9305#2 length = 481 sequences # 3

consensusID : consensus_9305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1047
fasta sequence

                              [GCAATGATAAGAAAAAAACATAATAATGCTTAAAATCAGAAATGCTATACATCAAATAAAAAGGCAAATCAAAAATTGCTAACTACAAAACTA-TAAAATC-TTTGGACAAAATGGAACACGCATACACAGTGTACATTCGATGTGATAATACACACTATTTACATACTATGATTGGATAGTGGAATTACGTAGTTTCATATACGTGTACTTAGACAACAGTGAGAGAGTTGTTGATTAGTTTCCTAGATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATAAACTAACTACTTAACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATACTTAGCTAAAAATAAAAGAGAAAATGTATGCAATGCATTTCTTATGGTTATTATACAACTGTCTTTCCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTTATAGTCATTCAAAAATTCATTGTGTAAATCGTTGTTAATACATAGTTTACACTGGGTTGTATGTATAGATTTCTGACGGGATAAAAGTGAGTTTGATAAAAACATGTTCACAAAATAAGTGGATTAAAAAAGAATACAAATTTTCCAAAAATAAAATAGTAGTCCAATATAATCATCCAGATAGCTCTCGTGTCACAAAAGACATGGGGAAGAATCCAATACGACCATTTAACCATCCCTTCCACCAGCCTCTGTCTTCAGCTGCACGACTAACTACAGCAATTCGATCACCTCCTTTCAAATTCAAGAAACGAGTATTAGACGTATCATGAAAATCGAAATTTGCACGAACATAGAACAATGGCGATGAAGGACACTTCTGGTAGGGATAAAGTAAGGTGATATCAACTTCATCGAAGCACCGATTTAACGACACTTTGGAGTAGTTATCAATTACAGACGGTATATTTGGGAAAAGTTCTAATTCACAAAGACCATATGTAATGCAGTCCTCGTA]

[+] EMBL CD141174             [GCAATGATAAGAAAAAAACATAATAATGCTTAAAATCAGAAATGCTATACATCAAATAAAAAGGCAAATCAAAAATTGCTAACTACAAAACTATTAAAATCTTTTGGACAAAATGGAACACGCATACACAGTGTACATTCGATGTGATAATACACACTATTTACATACTATGATTGGATAGTGGAATTACGTAGTTTCATATACGTGTACTTAGACAACAGTGAGAGAGTTGTTGATTAGTTTCCTANATTAACGATCAAGGAACACGAATGTACAAGATAAACAGAGGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTACCNAATAAACTAACTACTTAACGATCAAATAGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD141619             [  cATGATTAGAAAAAAACATATNNATGCTTAAAATCAGAAATGCTATACATCAAATAAAAAGGCAAATCAAAAATTGCTAACTACAAAACTA TAAAATC TTTCGACAAAATGGAACACGCATACACAGTGTACATTCGATGTGATAATACACACTATTTACATACTATGATTGGATAGTGGAAATACGTAGTGTCATATACGTGTACTTAGACAACAGTGAGAGAGTTGTTGATTAGTGTCCTAGATTAACGATCAAGGAACACGAATGTACAAAGTAAACAGAAGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATAAGCTAACTACTTAGCGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD149621             [                                                                                                                                                                                                                                           ATTANTTTCGGGGATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATGAACTAACTACTTAACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATACTTAGCTAAAAATAAAAGAGAAAATGTATGCAATGCATTTCTTATGGTTATTATACAACTGTCTTTCCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTTATAGTCATTCAAAAATTCATTGTGTAAATCGTTGTTAATACATAGTTTACACTGGGTTGTATGTATAGATTTCTGACGGGATAAAAGTGAGTTTGATAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD082254             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTCCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAANAAAGGAAGTTATAGTCATTCAAANATTCATTGTGTAAATCGTTGTTAATACATAGTTTACACTGGGTTGTATGTATAGATTTCTGACGGGATAAAAGTGAGTTTGATAAAAACATGTTCACAAAATAAGTGGATTAAAAAAGAATACAAATTTTCCAAAAATAAAATAGTAGTCCAATATAATCATCCAGATAGCTCTCGTGTCACAAAAGACATGGGGAAGAATCCAATACGACCATTTAACCATCCCTTCCACCAGCCTCTGTCTTCAGCTGCACGACTAACTACAGCAATTCGATCACCTCCTTTCAAATTCAAGAAACGAGTATTAGACGTATCATGAAAATCGAAATTTGCACGAACATAGAACAATGGCGATGAAGGACACTTCTGGTAGGGATAAAGTAAGGTGATATCAACTTCATCGAAGCACCGATTTAACGACACTTTGGAGTAGTTATCAATTACAGACGGTATATTTGGGAAAAGTTCTAATTCACAAAGACCATATGTAATGCAGTCCTCGTA]




>consensus_9305#0
GCAATGATAAGAAAAAAACATAATAATGCTTAAAATCAGAAATGCTATACATCAAATAAA
AAGGCAAATCAAAAATTGCTAACTACAAAACTATAAAATCTTTGGACAAAATGGAACACG
CATACACAGTGTACATTCGATGTGATAATACACACTATTTACATACTATGATTGGATAGT
GGAATTACGTAGTTTCATATACGTGTACTTAGACAACAGTGAGAGAGTTGTTGATTAGTT
TCCTAGATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTA
TACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATAAACTAACTACTT
AACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATACTTAGCTAAAA
ATAAAAGAGAAAATGTATGCAATGCATTTCTTATGGTTATTATACAACTGTCTTTCCACA
TAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTTATAGTCATTC
AAAAATTCATTGTGTAAATCGTTGTTAATACATAGTTTACACTGGGTTGTATGTATAGAT
TTCTGACGGGATAAAAGTGAGTTTGATAAAAACATGTTCACAAAATAAGTGGATTAAAAA
AGAATACAAATTTTCCAAAAATAAAATAGTAGTCCAATATAATCATCCAGATAGCTCTCG
TGTCACAAAAGACATGGGGAAGAATCCAATACGACCATTTAACCATCCCTTCCACCAGCC
TCTGTCTTCAGCTGCACGACTAACTACAGCAATTCGATCACCTCCTTTCAAATTCAAGAA
ACGAGTATTAGACGTATCATGAAAATCGAAATTTGCACGAACATAGAACAATGGCGATGA
AGGACACTTCTGGTAGGGATAAAGTAAGGTGATATCAACTTCATCGAAGCACCGATTTAA
CGACACTTTGGAGTAGTTATCAATTACAGACGGTATATTTGGGAAAAGTTCTAATTCACA
AAGACCATATGTAATGCAGTCCTCGTA

consensusID : consensus_9305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence

                              [ATGTGAAAAGAGACGTATAAACTTACACGACCATTTAACCATCCCTTCCACCAGCCTCTGTCTTCAGCTGCACGACTAACTACAGCAATTCGATCACCTCCTTTCAAATTCAAGAAACGAGTATTAGACGTATCATGAAAATCGAAATTTGCACGAACATAGAACAATGGCGATGAAGGACACTTCTGGTAGGGATAAAGTAAGGTGATATCAACTTCATCGAAGCACCGATTTAACGACACTTTGGAGTAGTTATCAATTACACACGGTATATTTGGGAACTGTTCTAATTCACAAAGACCATATGTGATGCAGGAATTATCAGATGATGAAAAACGTTGTATACGAATATGCCGTGGATGACCGTAAACAACAGACAGTGAATATTCTCCCATTCTCTCAGCACTTTTAGACAGACGTACAAGAAATGTACCGTCAATACAATTACTTAATAAATTAACAGCTTCAAGTCTGTCCATTTCACCAACATACATGAATTTAAAGTCAAGCAGTTTTCTGAAT]

[+] EMBL CD120864             [ATGTGAAAAGAGACGTATAAACTTACACGACCATTTAACCATCCCTTCCACCAGCCTCTGTCTTCAGCTGCACGACTAACTACAGCAATTCGATCACCTCCTTTCAAATTCAAGAAACGAGTATTAGACGTATCATGAAAATCGAAATTTGCACGAACATAGAACAATGGCGATGAAGGACACTTCTGGTAGGGATAAAGTAAGGTGATATCAACTTCATCGAAGCACCGATTTAACGACACTTTGGAGTAGTTATCAATTACACACGGTATATTTGGGAACTGTTCTAATTCACAAAGACCATATGTGATGCAGGAATTA                                                                                                                                                                                                         ]
[-] EMBL CD178905             [                                                                                                                                                                                             TAGGGATAAAGTAAGGTGATATCAACTTCATCGAAGCACCGATTTAACGACACTTTGGAGTAGTTATCAATTACACACGGTATATTTGGGAACTGTTCTAATTCACAAAGACCATATGTAATGCAGGAATTATCAGATGATGAAAAACGTTGTATACGAATATGCCGTGGATGACCGTAAACAACAGACAGTGAATATTCTCCCATTCTCTCAGCACTTTTAGACAGACGTACAAGAAATGTACCGTCAATACAATTACTTAATAAATTAACAGCTTCAAGTCTGTCCATTTCACCAACATACATGAATTTAAAGTCAAGCAGTTTTCTGAAT]




>consensus_9305#1
ATGTGAAAAGAGACGTATAAACTTACACGACCATTTAACCATCCCTTCCACCAGCCTCTG
TCTTCAGCTGCACGACTAACTACAGCAATTCGATCACCTCCTTTCAAATTCAAGAAACGA
GTATTAGACGTATCATGAAAATCGAAATTTGCACGAACATAGAACAATGGCGATGAAGGA
CACTTCTGGTAGGGATAAAGTAAGGTGATATCAACTTCATCGAAGCACCGATTTAACGAC
ACTTTGGAGTAGTTATCAATTACACACGGTATATTTGGGAACTGTTCTAATTCACAAAGA
CCATATGTGATGCAGGAATTATCAGATGATGAAAAACGTTGTATACGAATATGCCGTGGA
TGACCGTAAACAACAGACAGTGAATATTCTCCCATTCTCTCAGCACTTTTAGACAGACGT
ACAAGAAATGTACCGTCAATACAATTACTTAATAAATTAACAGCTTCAAGTCTGTCCATT
TCACCAACATACATGAATTTAAAGTCAAGCAGTTTTCTGAAT

consensusID : consensus_9305#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 481
fasta sequence

                              [TTGATTAGTTTCCTAAATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATAAACTAACTACTTAACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATACTTAGCTAAAAATAAAAGAGAAAATGTATGCAATGCATTTCTTATGGTTATTATACAACTGTCTTTNCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTTATAGTCATTCAAAAATTCATTGTGTAAATCGTTNGTAATACATAGTTTACACTGGGTTGTATGTATAGCATTTCTGATTTTAAGCATTATTATGCTTTTTTCTTATCATTGCTACTTTTCTCCTCCATATGGTTCANAACACANAGCATTTACCATTACATCTGATAATGATAATAATTAG]

[+] EMBL CD152708             [TTGATTAGTTTCCTAAATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATAAACTAACTACTTAACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATACTTAGCTAAAAATAAAAGAGAAAATGTATGCAATGCATTTCTTATGGTTATTATACAACTGTCTTTNCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTTATAGTCATTCAAAAATTCATTGTGTAAATCGTTNGTAATACATAGTTTACACTGGGTTGTATGTATAGCATTTCTGATTTTAAGCATTATTATGCTTTTTTCTTATCATTGCTACTTTTCTCCTCCATATGGTTCANAACACANAGCATTTACCATTACATCTGATAATGATAATAATTAG]
[+] EMBL CD152736             [TTGATTAGTTTCCTAAATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATAAACTAACTACTTAACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATACTTAGCTAAAAATAAAAGAGAAAATGTATGCAATGCATTTCTTATGGTTATTATACA                                                                                                                                                                                                                                                     ]
[+] EMBL CD152589             [TTGATTAGTTTCCTAAATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATATACTAACTACTTAACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATACTTAGCTAAAAATAAAAGAGGAAATGTA                                                                                                                                                                                                                                                                                  ]




>consensus_9305#2
TTGATTAGTTTCCTAAATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGA
GAAGTTATTATACTTATAATAAGGCGCTACATACGTACAGACAATATAGTAACCAATAAA
CTAACTACTTAACGATCAAATAGTAATTATAATAATGTAATATTGATGGAAAAAAGATAC
TTAGCTAAAAATAAAAGAGAAAATGTATGCAATGCATTTCTTATGGTTATTATACAACTG
TCTTTNCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTT
ATAGTCATTCAAAAATTCATTGTGTAAATCGTTNGTAATACATAGTTTACACTGGGTTGT
ATGTATAGCATTTCTGATTTTAAGCATTATTATGCTTTTTTCTTATCATTGCTACTTTTC
TCCTCCATATGGTTCANAACACANAGCATTTACCATTACATCTGATAATGATAATAATTA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9305#0      GCAATGATAAGAAAAAAACATAATAATGCTTAAAATCAGAAATGCTATACATCAAATAAA 60
consensus_9305#2      ------------------------------------------------------------
consensus_9305#1      ------------------------------------------------------------
                                                                                  

consensus_9305#0      AAGGCAAATCAAAAATTGCTAACTACAAAACTATAAAATCTTTGGACAAAATGGAACACG 120
consensus_9305#2      ------------------------------------------------------------
consensus_9305#1      ------------------------------------------------------------
                                                                                  

consensus_9305#0      CATACACAGTGTACATTCGATGTGATAATACACACTATTTACATACTATGATTGGATAGT 180
consensus_9305#2      ------------------------------------------------------------
consensus_9305#1      ------------------------------------------------------------
                                                                                  

consensus_9305#0      GGAATTACGTAGTTTCATATACGTGTACTTAGACAACAGTGAGAGAGTTGTTGATTAGTT 240
consensus_9305#2      --------------------------------------------------TTGATTAGTT 10
consensus_9305#1      ---------------------------------ATGTGAAAAGAGACGTATAAACTTACA 27
                                                                        *  * *    

consensus_9305#0      TCCTAGATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTA 300
consensus_9305#2      TCCTAAATTAACGATCAAGGAACACGAATGTACAAAATAAACAGAAGCGAGAAGTTATTA 70
consensus_9305#1      CGACCATTTAACCATCCCTTC-CACCAGCCTCTGTCTTCAGCTGCA-CGACTAACTACAG 85
                             ***** ***      *** *   *      * * * * * ***  *  **   

consensus_9305#0      TACTTATAATAAGGCGCTACATACGTACAGACAATATAGTA-----ACCAATAAACTAAC 355
consensus_9305#2      TACTTATAATAAGGCGCTACATACGTACAGACAATATAGTA-----ACCAATAAACTAAC 125
consensus_9305#1      CAATTCGATCACCTCCTTTCAAATTCAAGAAACGAGTATTAGACGTATCATGAAAATCGA 145
                       * **  *  *   *  * ** *   *   *     ** **     * **  *** *   

consensus_9305#0      TACTTA-ACGATCAAATAGTAATTATAATAATG--TAATATTGATGGAAAAAAGATACTT 412
consensus_9305#2      TACTTA-ACGATCAAATAGTAATTATAATAATG--TAATATTGATGGAAAAAAGATACTT 182
consensus_9305#1      AATTTGCACGAACATAGAACAATGGCGATGAAGGACACTTCTGGTAGGGATAAAGTAAGG 205
                       * **  **** ** * *  ***    ** * *   * *  ** * *  * **  **   

consensus_9305#0      AGCTAAAAATAAAAGAGAAA-ATGTATGCAATGCATTTCTTATGGTTATTATACAACTGT 471
consensus_9305#2      AGCTAAAAATAAAAGAGAAA-ATGTATGCAATGCATTTCTTATGGTTATTATACAACTGT 241
consensus_9305#1      TGATATCAACTTCATCGAAGCACCGATTTAACG-ACACTTTGGAGTAGTTAT-CAATTA- 262
                       * **  **    *  ***  *   **  ** * *    **   **  **** *** *  

consensus_9305#0      CTTTCCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTTA 531
consensus_9305#2      CTTTNCACATAGATATATAACCAATAGATATTACAATAAATCAGTGAAAAAAGGAAGTTA 301
consensus_9305#1      CACACGGTATATTTGGG-AACTGTTCTAATTCACAAAGACCATATGTGATGCAGGAATTA 321
                      *       ***  *    ***   *  *  * ****  *     **  *    * * ***

consensus_9305#0      T-AGTCATTCAAAAATTCATTGTGTAAATCGTTGTTAATACATAGTTTACACTGGGTTGT 590
consensus_9305#2      T-AGTCATTCAAAAATTCATTGTGTAAATCGTTNGTAATACATAGTTTACACTGGGTTGT 360
consensus_9305#1      TCAGATGATGAAAAACGTTGTATACGAATATGCCGTGGATGACCGTAAACAACAGACAGT 381
                      * **    * *****     * *   ***      *     *  **  ***   *   **

consensus_9305#0      ATGTATAG-ATTTCTGACGGGATAAAAGTGAGTTTGATAAAAACATGTTCACAAAATAAG 649
consensus_9305#2      ATGTATAGCATTTCTGATTT--------TAAGCATTATTATGCTTTTTTCTTATCATTGC 412
consensus_9305#1      GAATATTCTCCCATTCTCTCAGCACTTTTAGACA--GACGTACAAGAAATGTACCGTCAA 439
                         ***        *             *                       *   *   

consensus_9305#0      TGGATTAAAAAAGAATACAAATTTTCCAAAAATAAAATAGTAGTCCAATATAATCATCCA 709
consensus_9305#2      TACTTTTCTCCTCCATATGG---TTCANAACACANAGCATTTA-CCATTACATCTGATAA 468
consensus_9305#1      TACAATTACTTAATAAATTAACAGCTTCAAGTCTGTCCATTTCACCAACATACATGAATT 499
                      *    *        * *           **        * *   ***  * *        

consensus_9305#0      -GATAGCTCTCGTGTCACAAAAGACATGGGGAAGAATCCAATACGACCATTTAACCATCC 768
consensus_9305#2      TGATAATAATTAG----------------------------------------------- 481
consensus_9305#1      TAAAGTCAAGCAGTTTTCTGAAT------------------------------------- 522
                        *                                                         

consensus_9305#0      CTTCCACCAGCCTCTGTCTTCAGCTGCACGACTAACTACAGCAATTCGATCACCTCCTTT 828
consensus_9305#2      ------------------------------------------------------------
consensus_9305#1      ------------------------------------------------------------
                                                                                  

consensus_9305#0      CAAATTCAAGAAACGAGTATTAGACGTATCATGAAAATCGAAATTTGCACGAACATAGAA 888
consensus_9305#2      ------------------------------------------------------------
consensus_9305#1      ------------------------------------------------------------
                                                                                  

consensus_9305#0      CAATGGCGATGAAGGACACTTCTGGTAGGGATAAAGTAAGGTGATATCAACTTCATCGAA 948
consensus_9305#2      ------------------------------------------------------------
consensus_9305#1      ------------------------------------------------------------
                                                                                  

consensus_9305#0      GCACCGATTTAACGACACTTTGGAGTAGTTATCAATTACAGACGGTATATTTGGGAAAAG 1008
consensus_9305#2      ------------------------------------------------------------
consensus_9305#1      ------------------------------------------------------------
                                                                                  

consensus_9305#0      TTCTAATTCACAAAGACCATATGTAATGCAGTCCTCGTA 1047
consensus_9305#2      ---------------------------------------
consensus_9305#1      ---------------------------------------