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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 777 fasta sequence
[CAAGCGAATTTGAGCATCTTTATTAGTAGATCTAACAACATAAAAATGAATAAATATTAAACGAATCCAGTCAATGGACAATGATCAAAGATAAAAAAAAACACTGAAGTAGATGATGACTTGAGGGTTAAATAAATAAGTAACAAGCATTAAATCACTAGAACTGTCCTGTAGATGATATAATTATAGCAGTTTAAAACAATTACCACAACATTTATGAAGATAAATTTAAGCAAACACATACAGCATAGCGAAACAATAAAATCTGATTCTAATTATCCACTAGACTGTTGGAATGTTCGAAGGTAAATGGAACGAAAGGATAACCATCACCACTGTAGAATTTATTTTGAAACTCCACCCAGTGGAGACGAAGTGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT-CCG-AAATCAAACTTATGAACATCATGACTACGTGGCGAATCTGTTTGACTAA-TTAGTGAAACCTTAGAACGTTTTTCAGATGATGATCTATGTAATGGAGACATGGTCCACTGTACATAATNCCCTCGTGCCGAAT]
[+] EMBL CD074558 [CAAGCGAATTTGAGCATCTTTATTAGTAGATCTAACAACATAAAAATGAATAAATATTAAACGAATCCAGTCAATGGACAATGATCAAAGATAAAAAAAAACACTGAAGTAGATGATGACTTGAGGGTTAAATAAATAAGTAACAAGCATTAAATCACTAGAACTGTCCTGTAGATGATATAATTATAGCAGTTTAAAACAATTACCACAACATTTATGAAGATAAATTTAAGCAAACACATACAGCATAGCGAAACAATAAAATCTGATTCTAATTATCCACTAGACTGTTGGAATGTTCGAAGGTAAATGGAACGAAAGGATAACCATCACCACTGTAGAATTTATTTTGAAACTCCACCCAGTGGAGACGAAGTGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT CCG AAATCAAACTTATGAACATCATGACTACGTGGCGAATCTGNTTGACTAA TTAGTGAAACCT ]
[+] EMBL CD074253 [CAAGCGAATTTGAGCTGCTTTATTAGTAGATCTAACAACATAAAAATGAATAAATATTAAACGAATCCAGTCAATGGACAATGATCAAAGATAAAAAAAAACACTGAAGTAGATGATGACTTGAGGGTTAAATAAATAAGTAACAAGCATTAAATCACTAGAACTGTCCTGTAGATGATATAATTATAGCAGTTTAAAACAATTACCACAACATTTATGAAGATAAATTTAAGCAAACACATACAGCATAGCGAAACAATAAAATCTGATTCTAATTATCCACTAGACTGTTGGAATGTTCGAAGGTAAATGGAACGAAAGGATAACCATCACCACTGTAGAATTTATTTTGAAACTCCACCCAGTGGAGACGAAGTGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT CCG AAATCAAACTTATGAACATCAT ]
[-] EMBL CD080333 [ AGCATTAAATCACTAGAACTGTCCTGTAGATGATATAATTATAGCAGTTTAAAACAATTACCACAACATTTATGAAGATAAATTTAAGCAAACACATACAGCATAGCGAAACAATAAAATCTGATTCTAATTATCCACTAGACTGTTGGAATGTTCGAAGGTAAATGGAACGAAAGGATAACCATCACCACTGTAGAATTTATTTTGAAACTCCACCCAGTGGAGACGAAGTGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT CCG AAATCAAACTTATGAACATCATGACTACGTGGCGAATCTGTTTGACTAA TTAGTGAAACCTTAGAACGTTTTTCAGATGATGATCTATGTAATGGAGACATGGTCCACTGTACATAATNCCCTCGTGCCGAAT]
[+] EMBL CD142434 [ AAATGGAACGAAAGGGTAACCATCACCACTGTAGAATTTATTTTGAAACTCCACCCAGTGAAGACGAAGGGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT CCG ACATCAAACTTATGAACATCATGACTACGTGGCGAATCTGTTTGACT A TTAGTGAAACCTTAG ACGTTTTTCAGAT ]
[+] EMBL CD142428 [ AAATGGAACGAAAGGATAACCATCACCACTGTAGAATTTATTTTGAGACTCCACCCAGTGGAGACGAAGGGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGGAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT CCGAAAATC AACTTATGAACATCATGACTACGTGGCGAATCTGTTTGACTAATTTAGTG AACCT ]
[+] EMBL CD142378 [ AAATGGAACGAAAGGATAACCATCACCACTGTAGAAGTTATTTTGAAACTCCACCCAGTGGAGACGAAGTGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAA CCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT CCC GAATCAAACTTATGAACATCATGACTACGTGGCGAATCTGTTTGA ]
[+] EMBL CD142455 [ AAATGGAACGAAAGGATAACCATCACCACTGTAGAATTTATTTTGAAACTCCACCCAGTGGAGACGAAGGGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGGCCATTATATCTCCCC GAATC AACTTATGAACATCATGACTACGTGGCGAATCTGTT ]
[+] EMBL CD142324 [ AAATGGAACGAAAGGATAACCATCACCACTGTAGAATTTATTTTGAAACTCCACCCAGTGGAGACGAAGTGTATGGAGAAAAGCAGATAACCCTTCCATGCACAAAAGAATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATATAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTTCCGACAATTGCGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAACCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCT CCN GAATCAAACTTATGAACATCATGACTACGTGGCGAATCTG ]
consensusID : consensus_9308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[CAAGTCCAACAGTTTCTATTTTCTACAATGAGTCGTTTTATTCATTTTACTCGATAATATTCTGAAATTGTTATATCATTTATAGAATATATATAATCGAATGCCTTATCTTTGTGAGTGTTTGATGTACGCTTCATTATATTGTTTTTTCCTAATAGTGGTTTTTTCGAATAAACATTTGGTTAATGCGCATGCTTGCTAAACAATCATTTACATTTTGAAATTGGATGCAAAATATCGATTATAGAGAATGATGCATCTACCTTCATGGACCGTAACATTTTTGTACACGTCTTTGGATTGAAATCATTTATATCAATTTTAATTGCTTTTAGTCAAAGTTAGTAATGTCTTGCTGTTCATATTCAACTCCTCTTGCTTAGAATTGTCGGAAGTCCTTTGGAGTATGGTTATGAGAATGGGTTTGCGT]
[+] EMBL CD184942 [CAAGTCCAACAGTTTCTATTTTCTACAATGAGTCGTTTTATTCATTTTACTCGATAATATTCTGAAATTGTTATATCATTTATAGAATATATATAATCGAATGCCTTATCTTTGTGAGTGTTTGATGTACGCTTCATTATATTGTTTTTTCCTAATAGTGGTTTTTTCGAATAAACATTTGGTTAATGCGCATGCTTGCTAAACAATCATTTACATTTTGAAATTGGATGCAAAATATCGATTATAGAGAATGATGCATCTACCTTCATGGACCGTAACATTTTTGTACACGTCTTTGGATTGAAATCATTTATATCAATTTTAATTGCTTTTAGTCAAAGTTAGTAATGTCTTGCTGTTCATATTCAACTCCTCTTGCTTAGAATTGTCGGAAGTCCTTTGGAGTATGGTTATGAGAATGGGTTTGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9308#0 CAAGCGAATTTGAGCATCTTTATTAGTAGATCTAACAACATAAAAATGAATAAATATTAA 60
consensus_9308#1 ------------------------------------------------------------
consensus_9308#0 ACGAATCCAGTCAATGGACAATGATCAAAGATAAAAAAAAACACTGAAGTAGATGATGAC 120
consensus_9308#1 ------------------------------------------------------------
consensus_9308#0 TTGAGGGTTAAATAAATAAGTAACAAGCATTAAATCACTAGAACTGTCCTGTAGATGATA 180
consensus_9308#1 --------CAAGTCCAACAGTTTCTATTTTCTA--CAAT-GAGTCGTTTTATTCATTTTA 49
** * * *** * * * * ** * ** ** * * ** **
consensus_9308#0 TAATTATAGCAGTTTAAAACAATTACCACAACATTTATGAAGATAAATTTAAGCAAACAC 240
consensus_9308#1 CT-CGATAATATTCTGA---AATTGTTATATCATTTATAGA-ATATATATAATCGAATGC 104
*** * * * * **** * * ******* * *** ** *** * ** *
consensus_9308#0 ATACAGCATAGCGAAACAATAAAATCTGATTC----TAATTATCCACTAGACTGTTGGAA 296
consensus_9308#1 CT-TATCTTTGTGAGTGTTTGATGTACGCTTCATTATATTGTTTTTTCCTAATAGTGGTT 163
* * * * * ** * * * * *** ** * * * * ***
consensus_9308#0 TGTTCGAAGGTAAATGGAACGAAAGGATAACCAT-CACCACTGTAGAATTTATTTTGAAA 355
consensus_9308#1 TTTTCGAATAAACATTTGGTTAATGCGCATGCTTGCTAAACAATCATTTACATTTTGAAA 223
* ****** * ** ** * * * * * ** * * *********
consensus_9308#0 CTCCACCCAGTGGAGACGAAGTGTATGGAGAAAAGCAGATAATCCTTCCATGCACAAAAG 415
consensus_9308#1 TTGGATGCA----AAATATCGATTATAGAGAATGATGCATC-TACCTTCATGGACCGTAA 278
* * ** * * * *** ***** ** * * * **** ** *
consensus_9308#0 AATACTAACGGTTAGCACAGCCCAGAATGCGAAAATAAATGCTAACACAACACCGCCATA 475
consensus_9308#1 CATTTTTGTACACGTC----TTTGGATTGAAATCATTTATATCAATTTTA-ATTGC--TT 331
** * * ** ** * ** ** ** * * ** *
consensus_9308#0 TAGACCAGATATACGCAAACCCATTCTCATAACCATACTCCAAAGGACTT-CCGACAATT 534
consensus_9308#1 TTAGTCAAAGTTA-GTAA---TGTCTTGCTGTTCATATTCAACTCCTCTTGCTTAGAATT 387
* ** * ** * ** * * * **** ** * *** * * ****
consensus_9308#0 G-CGCATGTGCTAAACTCAAAGCCCATAGACGAAGATAAGAAGCTGTGTTGGAAATGCAA 593
consensus_9308#1 GTCGGAAGTCCT----TTGGAGTATGGTTATGAGAAT--GGGTTTGCGT----------- 430
* ** * ** ** * ** * ** ** * ** **
consensus_9308#0 CCTAAGCAAAACTCAATCGTATGAATGCTTTGATGGACCATTATATCTCCGAAATCAAAC 653
consensus_9308#1 ------------------------------------------------------------
consensus_9308#0 TTATGAACATCATGACTACGTGGCGAATCTGTTTGACTAATTAGTGAAACCTTAGAACGT 713
consensus_9308#1 ------------------------------------------------------------
consensus_9308#0 TTTTCAGATGATGATCTATGTAATGGAGACATGGTCCACTGTACATAATNCCCTCGTGCC 773
consensus_9308#1 ------------------------------------------------------------
consensus_9308#0 GAAT 777
consensus_9308#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||