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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9309#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CAGGCCCCTTATATGGTCAACCACAAACATCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTTGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGNCATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCACACATCGTCCAACATTGTTACGCGCTCTGAAATCCTGCTTCGTAACAAGTCTACCTCTGTCATCAGCTCTTTGTTCTGCTTCGACAGTGCATCAGCTTCGTTGATGGATGGTTCGCGTTTGTTGACTGTAAAGGANAGTGAAGTTGCGGATCTGAAAGAAGAAAAGCGTCATTTGCGAGACGAAGTGAGTGAG]
[+] EMBL CD136788 [CAGGCCCCTTATATGGTCAACCACAAACATCAACAGTGCTTTCGTCTTGGTCACGTCATTCTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTCACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAACTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCAACGGTCAGTCGACAAGCCTTCATGTGCATAGTTGATGTCTTGCACCGGTGACGTGGATCGACCAACTGTTTCGCATAGGCGACGTGAGGCCCGTTCGTACTCACTCACTCTGTTCGCCATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGNCATTCTTTCACCTGCTTCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGCACACATCGTCCAACATTGTTACGCGCTCTGAAATCCTGCTTCGTAACAAGTCTACCTCTGTCATCAGCTCTTTGTTCTGCTTCGACAGTGCATCAGCTTCGTTGATGGATGGTTCGCGTTTGTTGACTGTAAAGGANAGTGAAGTTGCGGATCTGAAAGAAGAAAAGCGTCATTTGCGAGACGAAGTGAGTGAG]
consensusID : consensus_9309#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[CCATGCTGACTCGTTAGACAATCTGAGGGGTAGATTGTACGGCCAAACCACTAGTTGAATTCACTACAAGACCTGAGATGTTGTTATATCTATGTTGATGTTGACATGTTAACGTCACTGTCCGTTCGGTATTAAGACCCAGACAAATGCAACAGCCAATGATCACTGATGACTGTTATCGCTGGTCAGAACCCTCAAGATAGTCGATTCCTGCATGCTATGGATAGGAAGACCGGGATGTAGTTTCTGATCAACATGGAAAATTTTAGGGTGATACCAACCACCGCAACTCTACCTGTAGCTCTTCTAGAGTTACTGCCGGTTCCAAGCCCGTAGAAAACTAACCCGCTAAAGAAAACGCTAACCAGAAAAATATTCAAACCATTTAAACT]
[+] EMBL AW587529 [CCATGCTGACTCGTTAGACAATCTGAGGGGTAGATTGTACGGCCAAACCACTAGTTGAATTCACTACAAGACCTGAGATGTTGTTATATCTATGTTGATGTTGACATGTTAACGTCACTGTCCGTTCGGTATTAAGACCCAGACAAATGCAACAGCCAATGATCACTGATGACTGTTATCGCTGGTCAGAACCCTCAAGATAGTCGATTCCTGCATGCTATGGATAGGAAGACCGGGATGTAGTTTCTGATCAACATGGAAAATTTTAGGGTGATACCAACCACCGCAACTCTACCTGTAGCTCTTCTAGAGTTACTGCCGGTTCCAAGCCCGTAGAAAACTAACCCGCTAAAGAAAACGCTAACCAGAAAAATATTCAAACCATTTAAACT]
consensusID : consensus_9309#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[TCATAAAGCAGTCACTCTCAAGAATCATTGATGGACATTTGATCAGTGATGTCTGTATTTCATGATGAAATAGAAATTGAGGATATGGGGTATGATGAAGAATCAGAAACGTATTCCTATCCTTGTCCGTGTGGTGATCGATTTTTAATTACCAAGGAAGATTTACTGTGTGGTGATGATATAGCACGATGTCCAAGCTGTTCTCTTTACGTGCGTGTTATTTATGATATGGAAAATATACTTCCTAACGTGAAAGAATCGTCAGCTGAAATAATGGTTTCCTAAAAATTTCTGTATTATCTTCAATAAACATTTCTCGAATCCATT]
[+] EMBL CD116144 [TCATAAAGCAGTCACTCTCAAGAATCATTGATGGACATTTGATCAGTGATGTCTGTATTTCATGATGAAATAGAAATTGAGGATATGGGGTATGATGAAGAATCAGAAACGTATTCCTATCCTTGTCCGTGTGGTGATCGATTTTTAATTACCAAGGAAGATTTACTGTGTGGTGATGATATAGCACGATGTCCAAGCTGTTCTCTTTACGTGCGTGTTATTTATGATATGGAAAATATACTTCCTAACGTGAAAGAATCGTCAGCTGAAATAATGGTTTCCTAAAAATTTCTGTATTATCTTCAATAAACATTTCTCGAATCCATT]
consensusID : consensus_9309#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 326 fasta sequence
[CGACCTTCAGCGAGACACCGACCTCCGCCTCCTCCTACGTCGGTGTCGAGCCACCACTCTTACGAATTTGTCCGTCACGTTCACGTACTCCTCTCCAGGTCGGGTCGTTTCGCCCAATGGTCCGACTGTGGTTTGTCGCCTCCTCCTACGTCGGTGTTTCATCTCAGCTTTCATCTCATCAGCAGCTTTTTGCATAATCAGTTGTTTCAACAGACGTTTCTTCTCTTTCGACAAACCACCTAAACCTTTACGCTTCTGACCAGGTTTACGTTGTTTCTTTGAGGCTTCTCAGCTTCTTTGCGTTTCTTCTCCTCTAGTTTACGCTG]
[+] EMBL CD146135 [CGACCTTCAGCGAGACACCGACCTCCGCCTCCTCCTACGTCGGTGTCGAGCCACCACTCTTACGAATTTGTCCGTCACGTTCACGTACTCCTCTCCAGGTCGG ]
[+] EMBL CD141157 [ GTCGAGCCACCACTCTTCCGAATTTGTCCGTCACGTTCACGTACTCCTCTCCAGGTGTTGTCGTTTCGCCCAATGGTCCGACTGTGGTTTGTCGCCTCCTCCTACGTCGGTGTTTCATCTCAGCTTTCATCTCATCAGCAGCTTTTTGCATAATCAGTTGTTTCAACAGACGTTTCTTCTCTTTCGACAAACCACCTAAACCTTTACGCTTCTGACCAGGTTTACGTTGTTTCTTTGAGGCTTCTCAGCTTCTTTGCGTTTCTTCTCCTCTAGTTTACGCTG]
consensusID : consensus_9309#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[GGGAGGAAATGTTGGAGAATTTCAACCTACAGATAATTTTTTTTAAAATCAGAATCTAATCTTCGAATCTTCAAAAAAAAGGGAGGTGTTAGGTCGGCTTACGATAAACTCTAGAGAGGCTCATAAAGAGACCAACCAACTCAGCGATTAGTTAGAAGCTATGCTACTAAAATGCTACTAAAATAACAAGGTCCTGATTGGCTGTTAACAATACTGTTACTATGGTATCTCAAGGTCTTTTAATTACTAAAAAACCCCTATTTTTCTGAAAAAAGTGAACCT]
[+] EMBL AW497757 [GGGAGGAAATGTTGGAGAATTTCAACCTACAGATAATTTTTTTTAAAATCAGAATCTAATCTTCGAATCTTCAAAAAAAAGGGAGGTGTTAGGTCGGCTTACGATAAACTCTAGAGAGGCTCATAAAGAGACCAACCAACTCAGCGATTAGTTAGAAGCTATGCTACTAAAATGCTACTAAAATAACAAGGTCCTGATTGGCTGTTAACAATACTGTTACTATGGTATCTCAAGGTCTTTTAATTACTAAAAAACCCCTATTTTTCTGAAAAAAGTGAACCT]
consensusID : consensus_9309#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[TACACGTACTATACCCAATTCTAACATTACAACAAAATGAGTGACGAAGAAAGCCAACAAAGTTCATCGGAAGAAGAGACTGAGAAGGAAAAAAGGGAAAAGGAAGAAGAACGTCGACGCAGAGAGGAAGAGGAGAAGAAACGTAAAGAAGCTGAAGAAGCCTCAAAGAAACAACGTAAACCTGGTCAGAAGCGTAAAGGTTTAGGTGGTTTGTCGAAAGAGAAGAAACGACTGTTGAAACAACTGATTATGCGAAAAGCTGCTGAT]
[+] EMBL CD122669 [TACACGTACTATACCCAATTCTAACATTACAACAAAATGAGTGACGAAGAAAGCCAACAAAGTTCATCGGAAGAAGAGACTGAGAAGGAAAAAAGGGAAAAGGAAGAAGAACGTCGACGCAGAGAGGAAGAGGAGAAGAAACGTAAAGAAGCTGAAGAAGCCTCAAAGAAACAACGTAAACCTGGTCAGAAGCGTAAAGGTTTAGGTGGTTTGTCGAAAGAGAAGAAACGACTGTTGAAACAACTGATTATGCGAAAAGCTGCTGAT]
consensusID : consensus_9309#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 188 fasta sequence
[AAAAAATTCCGGGAAATCTAATCTTCGAATCTTCAAAAAAAGGAAGGTGTTAGGTCGGCTTACGATAAACTCTAGAGAGGCTCATAAAGAGACCAACCAATCAGCGATTAGTTAGAAGCTATGCTACTAAAAGTCTACTAAAATAACAAGGTCCTGATGGCTGTTAACATACTGTACTATGGTATCTC]
[+] EMBL AA804158 [AAAAAATTCCGGGAAATCTAATCTTCGAATCTTCAAAAAAAGGAAGGTGTTAGGTCGGCTTACGATAAACTCTAGAGAGGCTCATAAAGAGACCAACCAATCAGCGATTAGTTAGAAGCTATGCTACTAAAAGTCTACTAAAATAACAAGGTCCTGATGGCTGTTAACATACTGTACTATGGTATCTC]
[+] EMBL AA791357 [AAAAAATTCCGGGAAATCTAATCTTCGAATCTTCAAAAAAAGGAAGGTGTTAGGTCGGCTTACGATAAACTCTAGAGAGGCTCATAAAGAGACCAACCAATCAGCGATTAGTTAGAAGCTATGCTACTAAAAGTCTACTAAAATAACAAGGTCCTGATGGCTGTTAACATACTGTACTATGGTATCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9309#4 ------------------------------------------------------------
consensus_9309#6 ------------------------------------------------------------
consensus_9309#0 CAGGCCCCTTATATGGTCAACCACAAACATCAACAGTGCTTTCGTCTTGGTCACGTCATT 60
consensus_9309#2 ------------------------------------------------------------
consensus_9309#5 ------------------------------------------------------------
consensus_9309#3 ------------------------------------------------------------
consensus_9309#1 ------------------------------------------------------------
consensus_9309#4 ------------------------------------------------------------
consensus_9309#6 ------------------------------------------------------------
consensus_9309#0 CTCCAAGTCACTGGTCACAGTCACATAGCTTTCGAGACGACGCTTCAGCGACTCACACTC 120
consensus_9309#2 ------------------------------------------------------------
consensus_9309#5 ------------------------------------------------------------
consensus_9309#3 ------------------------------------------------------------
consensus_9309#1 ------------------------------------------------------------
consensus_9309#4 ------------------------------------------------------------
consensus_9309#6 ------------------------------------------------------------
consensus_9309#0 ACAGATCAGGTCATTGTTCACTGACTCACATTCTTTCAGTTTCTCAGTGACCACCTCCAA 180
consensus_9309#2 ------------------------------------------------------------
consensus_9309#5 ------------------------------------------------------------
consensus_9309#3 ------------------------------------------------------------
consensus_9309#1 --------------------------------------------CCATGCTGACTCGTTA 16
consensus_9309#4 ------------------------------------------------------------
consensus_9309#6 ------------------------------------------------------------
consensus_9309#0 CTCGAACGATTGTGTATCCAGTGCACGCTGCAAATCCTCTCGTAACCCGTCTGATGTGCA 240
consensus_9309#2 -----------------------------------------------------TCATAAA 7
consensus_9309#5 ------------------------------------------------------------
consensus_9309#3 ------------------------------------------------------------
consensus_9309#1 GACAATCTGAGGGGTAGATTGTACGGCCAAACCACTAGTTGAATTCACTACAAGACCTGA 76
consensus_9309#4 ------------------------------------------------------G-GGAG 5
consensus_9309#6 ------------------------------------------------------------
consensus_9309#0 ACGGTCAGTCGACAAGCCTTCATGTGCATAGTTGATGTCTTGCACCGGTGACGTG-GATC 299
consensus_9309#2 GCAGTCACTCTCAAGAATCATTGATGGACATTTGATCAGTGATGTCTGTATTTCATGATG 67
consensus_9309#5 ------------------------TACACGTACTATACCCAATTCTAACATTACA--ACA 34
consensus_9309#3 ---------------------CGACCTTCAGCGAGACACCGACCTCCGCCTCCTCCTACG 39
consensus_9309#1 GATGTTGTTATATCTATGTTGATGTTGACATGTTAACGTCACTGTCCGTTCGGTATTAAG 136
consensus_9309#4 GAAATGTTGGAGAATTTCAACCTACAGATA-ATTTTTTTTAAAATCAGAATCTAATCTTC 64
consensus_9309#6 -----------------------------A-AAAAATTCCGGGA----AATCTAATCTTC 26
consensus_9309#0 GACCAACTGTTTCGCATAGGCGACGTGAGG-CCCGTTCGTACTCACTCACTCTGTTCGCC 358
consensus_9309#2 AAATAGAAATTGAGGATATGGGGTATGATG-AAGAATCAGAAACGT--ATTCCTATCCTT 124
consensus_9309#5 AAATGAGTGACGAAGAAAGCCAACAAAGTTCATCGGAAGAAGAGACTGAGAAGGAAAAAA 94
consensus_9309#3 TCGGTGTCGAGCCACCACTCTTACGAATTT-GTCCGTCACGTTCACGTACTCCTCTCCAG 98
consensus_9309#1 ACCCAGACAAATGCAACAGCCAATGATCACTGATGACTGTTATCGCTGGTCAGAACCCTC 196
consensus_9309#4 GAATCTTCAAAAAAAAGGGAGGTGTTAGGTCG-GCT-TACGATAAA--CTCTAGAGAGGC 120
consensus_9309#6 GAATCTTCAAAAAAA-GGAAGGTGTTAGGTCG-GCT-TACGATAAA--CTCTAGAGAGGC 81
consensus_9309#0 ATGTCGGCACGGTCAGCATTCGCCTCAGCATGTGCTGCACGNCATT--CTTTCACCTGCT 416
consensus_9309#2 GTCCGTGTGGTGATCGATTTTTAATTACCAAGGAAGATTTACTGTG--TGGTGATGATAT 182
consensus_9309#5 GGGAAAAGGAAGAAGAACGTCGACGCAGAGAGGAAGAGGAGAAGAA--ACGTAAAGAAGC 152
consensus_9309#3 GTCGGGTCGTTTCGCCCAATGGTCCGACTGTG----GTTTGTCGCC--TCCTCCTACGTC 152
consensus_9309#1 AAGATAGTCGATTCCTGCATGCTATGGATAGGAAGACCGGGATGTAGTTTCTGATCAACA 256
* *
consensus_9309#4 TCATAAAGAGACCAACCAACTCAGCGAT-TAGTTAGAAGCTATGC----TACTAAAATGC 175
consensus_9309#6 TCATAAAGAGACCAACCAA-TCAGCGAT-TAGTTAGAAGCTATGC----TACTAAAAGTC 135
consensus_9309#0 TCAACAAGAAACCAAGTGATCCTCTGACCTCATCCATCTCCATGC-----ACACATCGTC 471
consensus_9309#2 AGCACGATGTCCAAGCTGTTCTCTTTACGTGCGTGTTATTTATGA----TATGGAAAATA 238
consensus_9309#5 TGAAGAAGCCTCAAAGAAA-----CAACGTAAACCTGGTCAGAAG----CGTAAAGGTTT 203
consensus_9309#3 GGTGTTTCATCTCAGCTTTCATCTCATCAGCAGCTTTTTGCATAA----TCAGTTGTTTC 208
consensus_9309#1 TGGAAAATTTTAGGGTGATACCAACCACCGCAACTCTACCTGTAGCTCTTCTAGAGTTAC 316
consensus_9309#4 TACTAAAATAACAAGGTCCTGA---TTGGCTGTTAACAATACTGTTACTATGGT-ATCTC 231
consensus_9309#6 TACTAAAATAACAAGGTCCTGA---T-GGCTGTTAACA-TACTGT-ACTATGGT-ATCTC 188
consensus_9309#0 CAACATTGTTACGCGCTCTGAAATCCTGCTTCGTAACAAGTCTACCTCTGTCATCAGCTC 531
consensus_9309#2 TACT-TCCTAACGTGAAAGAATCGTCAGCT--GAAATAATGGTTTCCTAAAAAT-TTCTG 294
consensus_9309#5 AGGTGGTTTGTCGAAAGAGAAGAAAC-GACTGTTGAAACAACTGATTATGCGAAAAGCTG 262
consensus_9309#3 AACAGACGTTTCTTCTCTTTCGA--CAAACCACCTAAACCTTTACGCTTCTGACCAGGTT 266
consensus_9309#1 TGCCGGTTCCAAGCCCGTAGAAAACTAACCCGCTAAAGAAAACGCTAACCAGAA-AAATA 375
* *
consensus_9309#4 AAGGTCTTTTAATTACTAAAAAACCCCTATTTTTCTGAAAAAAGTGAACCT--------- 282
consensus_9309#6 ------------------------------------------------------------
consensus_9309#0 TTTGTTCTGCTTCGACAGTGCATCAGCTTCGTTGATGGATGGTTCGCGTTTGTTGACTGT 591
consensus_9309#2 TATTATCTTCAATAAACATTTCTCGAATCCATT--------------------------- 327
consensus_9309#5 CTGAT------------------------------------------------------- 267
consensus_9309#3 TACGTTGTTTCTTTGAGGCTTCTCAGCTTCTTTGCGTTTCTTCTCCTCTAGTTTACGCTG 326
consensus_9309#1 TTCAAACCATTTAAACT------------------------------------------- 392
consensus_9309#4 ------------------------------------------------------------
consensus_9309#6 ------------------------------------------------------------
consensus_9309#0 AAAGGANAGTGAAGTTGCGGATCTGAAAGAAGAAAAGCGTCATTTGCGAGACGAAGTGAG 651
consensus_9309#2 ------------------------------------------------------------
consensus_9309#5 ------------------------------------------------------------
consensus_9309#3 ------------------------------------------------------------
consensus_9309#1 ------------------------------------------------------------
consensus_9309#4 ----
consensus_9309#6 ----
consensus_9309#0 TGAG 655
consensus_9309#2 ----
consensus_9309#5 ----
consensus_9309#3 ----
consensus_9309#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||