These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1288 fasta sequence [CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGATCCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACATTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT-TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTACTATCTATGATAATACAATTAAGATGCTA] [+] EMBL CD082622 [CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGATCCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACATTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGC AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTTNTTGA ] [+] EMBL CD077865 [ GATGAAAGTGCATTCGGGTTGCGTAGATGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACTTTTAA ] [+] EMBL CD084226 [ TTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAG ] [+] EMBL CD083390 [ acgaggTTGGAATGCATTTTGAAAACTACC ATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAA ] [-] EMBL CD074256 [ GCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACAAA ] [-] EMBL CD126070 [ AAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAGGTGCTTTGAAAAAATTACAGAAATTGTATATTGCcag ] [-] EMBL CD076218 [ CACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCACCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACCAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTACTATCTATGATAATACAATTAAGATGCTA] [-] EMBL CD166758 [ AAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAACACCAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTTTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCCAAAAAAAACATATTGTTACATCTTCATTTCATGTGTAT ] consensusID : consensus_9311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGT] [+] EMBL CD077551 [GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9311#0 CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGAT 60 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 CCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACA 120 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 TTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATA 180 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 GGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTT 240 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 TTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTT 300 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 GTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGT 360 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 CTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATAC 420 consensus_9311#1 ----GAGGCCAAGATTCGGCACGAG-GATCAAACTAGTCTTTCTGAATCAACGTGTATAC 55 * * ** ** * ********************************* consensus_9311#0 CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT 480 consensus_9311#1 CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT 115 ************************************************************ consensus_9311#0 CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA 540 consensus_9311#1 CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA 175 ************************************************************ consensus_9311#0 AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAA 600 consensus_9311#1 AAAAACGGTTATACGAAGCATGTGATCGTTTCCGT------------------------- 210 *********************************** consensus_9311#0 TTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTT 660 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 TCATTGGATTGGTTGATAAGAAATTTTTGATAAGCGAGCATTCAGAAAGTAAAACAAAGC 720 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 GTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTT 780 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 GGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTA 840 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 CACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGT 900 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 ATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTT 960 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 TAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCT 1020 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 TGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTG 1080 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 TATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTG 1140 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 ATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAAC 1200 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 AGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTAC 1260 consensus_9311#1 ------------------------------------------------------------ consensus_9311#0 TATCTATGATAATACAATTAAGATGCTA 1288 consensus_9311#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||