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Schistosoma mansoni
cluster # 9311 cluster # 9311       Sequences # 9       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9311#0 length = 1288 sequences # 8  
consensus_9311#1 length = 210 sequences # 1  

consensusID : consensus_9311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1288
fasta sequence
                              [CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGATCCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACATTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT-TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTACTATCTATGATAATACAATTAAGATGCTA]

[+] EMBL CD082622             [CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGATCCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACATTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGC AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTTNTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD077865             [                                                                                                                                         GATGAAAGTGCATTCGGGTTGCGTAGATGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACTTTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD084226             [                                                                                                                                                                                                                                                                                TTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD083390             [                                                                                                                                                                                                                                                                                                                                                                    acgaggTTGGAATGCATTTTGAAAACTACC ATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD074256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACAAA                                                                   ]
[-] EMBL CD126070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAGGTGCTTTGAAAAAATTACAGAAATTGTATATTGCcag                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD076218             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCACCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACCAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTACTATCTATGATAATACAATTAAGATGCTA]
[-] EMBL CD166758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAACACCAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTTTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCCAAAAAAAACATATTGTTACATCTTCATTTCATGTGTAT                                                                                                                                                                                                             ]


>consensus_9311#0 CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGAT CCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACA TTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATA GGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTT TTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTT GTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGT CTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATAC CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAA TTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTT TCATTGGATTGGTTGATAAGAAATTTTTGATAAGCGAGCATTCAGAAAGTAAAACAAAGC GTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTT GGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTA CACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGT ATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTT TAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCT TGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTG TATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTG ATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAAC AGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTAC TATCTATGATAATACAATTAAGATGCTA



consensusID : consensus_9311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence
                              [GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGT]

[+] EMBL CD077551             [GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGT]


>consensus_9311#1 GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACAT GGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTA AGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAA CGGTTATACGAAGCATGTGATCGTTTCCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9311#0      CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGAT 60
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      CCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACA 120
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATA 180
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTT 240
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTT 300
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGT 360
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      CTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATAC 420
consensus_9311#1      ----GAGGCCAAGATTCGGCACGAG-GATCAAACTAGTCTTTCTGAATCAACGTGTATAC 55
                          *      *  **    ** *   *********************************

consensus_9311#0      CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT 480
consensus_9311#1      CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT 115
                      ************************************************************

consensus_9311#0      CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA 540
consensus_9311#1      CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA 175
                      ************************************************************

consensus_9311#0      AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAA 600
consensus_9311#1      AAAAACGGTTATACGAAGCATGTGATCGTTTCCGT------------------------- 210
                      ***********************************                         

consensus_9311#0      TTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTT 660
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TCATTGGATTGGTTGATAAGAAATTTTTGATAAGCGAGCATTCAGAAAGTAAAACAAAGC 720
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTT 780
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTA 840
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      CACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGT 900
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      ATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTT 960
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCT 1020
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTG 1080
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTG 1140
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      ATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAAC 1200
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      AGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTAC 1260
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TATCTATGATAATACAATTAAGATGCTA 1288
consensus_9311#1      ----------------------------
                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)