cluster # 9311

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9311 cluster # 9311 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9311#0 length = 1288 sequences # 8

consensus_9311#1 length = 210 sequences # 1

consensusID : consensus_9311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1288
fasta sequence

                              [CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGATCCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACATTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT-TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTACTATCTATGATAATACAATTAAGATGCTA]

[+] EMBL CD082622             [CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGATCCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACATTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGC AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTTNTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD077865             [                                                                                                                                         GATGAAAGTGCATTCGGGTTGCGTAGATGGCTTTCTCTCGATAGGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTTTTATCCAAGCTATTATTCATGAAGGTGACACTTTTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD084226             [                                                                                                                                                                                                                                                                                TTTAAGGAGATTGTGGATACTTTCGCTTGTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGTCTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD083390             [                                                                                                                                                                                                                                                                                                                                                                    acgaggTTGGAATGCATTTTGAAAACTACC ATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAATTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD074256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTTTCATTGGATTGGTTGATAAGAAATTT TTGATAAGCGAGCATTCAGAAAGTAAAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACAAA                                                                   ]
[-] EMBL CD126070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAACAAAGCGTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAGGTGCTTTGAAAAAATTACAGAAATTGTATATTGCcag                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD076218             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CACCTTGGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTACACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAAAACAAATAAAACTTTGTCACCTTAGCTACCACCCGTGTGTGTGGTGTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTGTATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTGATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAACAGTTTGTAAAAATAAAACCAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTACTATCTATGATAATACAATTAAGATGCTA]
[-] EMBL CD166758             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAATTGTATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTTTAAAACACCAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTTTGTTGCTCTTGTCTCCCTTTATTTAAAATCTTCCAAAAAAAACATATTGTTACATCTTCATTTCATGTGTAT                                                                                                                                                                                                             ]




>consensus_9311#0
CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGAT
CCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACA
TTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATA
GGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTT
TTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTT
GTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGT
CTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATAC
CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT
CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA
AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAA
TTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTT
TCATTGGATTGGTTGATAAGAAATTTTTGATAAGCGAGCATTCAGAAAGTAAAACAAAGC
GTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTT
GGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTA
CACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGT
ATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTT
TAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCT
TGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTG
TATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTG
ATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAAC
AGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTAC
TATCTATGATAATACAATTAAGATGCTA

consensusID : consensus_9311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence

                              [GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGT]

[+] EMBL CD077551             [GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAACGGTTATACGAAGCATGTGATCGTTTCCGT]




>consensus_9311#1
GAGGCCAAGATTCGGCACGAGGATCAAACTAGTCTTTCTGAATCAACGTGTATACCACAT
GGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTTCTGTA
AGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCAAAAAA
CGGTTATACGAAGCATGTGATCGTTTCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9311#0      CCTCCGAGCCAANAATTCGGCACGAGGGGAGTTGCTGATCCACTGCTGTCGCTGCTGGAT 60
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      CCCCGGTACCATCTGGAGCTACCATAGCCGGTGGTAAGGTTCCAGAACATCATGAAAACA 120
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TTCCTTTAAGAGAAGCTGATGAAAGTGCATTTGGTTTTCGTAGTTGGCTTTCTCTCGATA 180
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GGCTAACTGAAGAACGTCTTATATCCAGTGTACATAAATCATTGGAAGCTAGTTCCATTT 240
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TTATCCAAGCTATTATTCATGAAGGTGACACATTTAAGGAGATTGTGGATACTTTCGCTT 300
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GTGAAATGCAGAAACAGTATGGAATTGATTTATTCAATGTGGAATCAGATGGGAGGCAGT 360
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      CTTTGGAATGCATTTTGAAAACTACCAATCAAACTAGTCTTTCTGAATCAACGTGTATAC 420
consensus_9311#1      ----GAGGCCAAGATTCGGCACGAG-GATCAAACTAGTCTTTCTGAATCAACGTGTATAC 55
                          *      *  **    ** *   *********************************

consensus_9311#0      CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT 480
consensus_9311#1      CACATGGATTAGAAATTAATGTTTGGCCAGTTGTTCTTAATTTTCTTCATATACTTGTTT 115
                      ************************************************************

consensus_9311#0      CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA 540
consensus_9311#1      CTGTAAGAAATACAATAAGAAAGATACTATCCTCAGGCTCAATAACTGATTCTTCGTGCA 175
                      ************************************************************

consensus_9311#0      AAAAACGGTTATACGAAGCATGTGATCGTTTCCGTGATATTGATCTTGTTAATTCTGGAA 600
consensus_9311#1      AAAAACGGTTATACGAAGCATGTGATCGTTTCCGT------------------------- 210
                      ***********************************                         

consensus_9311#0      TTCGGCTTCAGGATCGAGCTACAGCAATCGATCTTAGTCGTGGTTTAGATATTTCACCTT 660
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TCATTGGATTGGTTGATAAGAAATTTTTGATAAGCGAGCATTCAGAAAGTAAAACAAAGC 720
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GTGTTGAAACGAAAGTTATAAAAGAGATTGTTAAACAAGAGACTGGTCATATACCACCTT 780
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      GGGAACTTTTTCTATCTGAAGTGGATAAATATTCGAAGTTCGATTCTAAGGGTATGCCTA 840
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      CACATGATGCATCAGGAAATGAATTAACTAAAAGTGCTTTGAAAAAATTACAAAAATTGT 900
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      ATATTGCACAAGAGAAACGTCATGCAGCATTTTTAAAAAGTAAAGAATAATTTAAACGTT 960
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TAAAAAACAAATAAAACTTTGTCACCTTAGCTACCAGCCGTGTGTGTGGTGTGTTGCTCT 1020
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TGTCTCCCTTTATTTAAAATCTTCAAAAAAAAACATATTGTTACATCTTCATTTCATGTG 1080
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TATATTCAATTGTGAATGATATTTATCTTCGACATGCTTGAGGATTTCAATGTAGTTTTG 1140
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      ATTTTGGTTGTTTTGTATATTTGAGACGGTTATTTTGTATGTTCTTTTTTTCTAGTTAAC 1200
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      AGTTTGTAAAAATAAAACAAACTTCAAAGGATTCTGTTTACACTGTGTATCTATATTTAC 1260
consensus_9311#1      ------------------------------------------------------------
                                                                                  

consensus_9311#0      TATCTATGATAATACAATTAAGATGCTA 1288
consensus_9311#1      ----------------------------