These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 804 fasta sequence [CGGCACGAGGATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTTCGAACTGGATCTTAGTTGGGTTGGTGCAAATACAAAGGGTATACATCAACCTGTTCCTCGCAAACTCTTTGATGAAGCGGAGACATTCGCCAAACAGGCTTTAGAAGAAGCTGATGATTTAGATGACGAAGTAGAATAAACTATGTACATGTATGCATTATTTTCTAAAAATGTTTT] [+] EMBL CD078610 [CGGCACGAGGATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAA ] [+] EMBL CD200127 [ ATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATNGAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGT ] [+] EMBL CD148699 [ GGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTT ] [-] EMBL CD073074 [ AGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATCCCGTCCATGATGAAATCAAGGATAAAAATTTCGAACTGGATCTTAGTTGGGTTGGTGCAAATACAAAGGGTATACATCAACCTGTTCCTCGCAAACTCTTTGATGAAGCGGAGACATTCGCCAAACAGGCTTTAGAAGAAGCTGATGATTTAGATGACGAAGTAGAATAAACTATGTACATGTATGCATTATTTTCTAAAAATGTTTT] [-] EMBL CD087018 [ AAGCCGTATACCTCTCTACTCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGACCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATCAAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTTC ] [-] EMBL CD153713 [ TGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTGATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAAAATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAA ] consensusID : consensus_9312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 416 fasta sequence [CGTTCGTCGCGGAATTGTACTGGCTTAATCATGTCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAG-CCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACG-ACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGT] [-] EMBL CD063780 [CGTTCGTCGCGGAATTGTACTGGCTTAATCATGTCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAGACCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACG ACTAGCTATGTACATGCACGCT ] [+] EMBL AI976670 [ TAATCATGTCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAGGCAG CCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGACGGAACG ACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGT] [+] EMBL CD138384 [ TCTTCTATTGGCAGTGGGTATGACCTTACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCGGTAGAAAATAGCGGCACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTGGAGAATATTGTCACATCAAAACTTTACGAGCCCGGGTGTGTTAAACGGATTTATAATATTGATGACCATATCGGGATGGTGGTGATGCGATTTCATACTGACGCTAAGGCAATCGTTGAGGCAG CCAGAGAAGAATGCGCAAATTATCGCTATAGCTTTGGAAGCCGTATACCTCTCTACTCTCTGAC GAACGNACTAGCTATGTACATGCACGCTCATACACTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9312#0 -----------------------------CGGCACGAGGATTGGCAGTGGGTATGACCTT 31 consensus_9312#1 CGTTCGTCGCGGAATTGTACTGGCTTAATCATGTCTTCTATTGGCAGTGGGTATGACCTT 60 * * ********************* consensus_9312#0 ACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCG 91 consensus_9312#1 ACTGCATCTCAGTTCTCTCGAGGTGGAAATGTTTTCCAGATAGAGTATGCCTGTAAGGCG 120 ************************************************************ consensus_9312#0 GTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTG 151 consensus_9312#1 GTAGAAAATAGCGGTACAGCCATTGCTATTCAAGGTAAAGACTGTGTAGTTTTTGCTGTG 180 ************************************************************ consensus_9312#0 GAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATT 211 consensus_9312#1 GAGAATATTGTCACATCAAAACTTTACGAGCCCGGTTGTGTTAAACGGATTTATAATATT 240 ************************************************************ consensus_9312#0 GATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAG 271 consensus_9312#1 GATGACCATATCGGGATGGTGGTGATGGGATTTCAAACTGACGCTAAGGCAATCGTTGAG 300 ************************************************************ consensus_9312#0 GCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTAC 331 consensus_9312#1 GCAGCCAGAGAAGAATGCGCAAATTATCGCAATAGCTTTGGAAGCCGTATACCTCTCTAC 360 ************************************************************ consensus_9312#0 TCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGTCAGA 391 consensus_9312#1 TCTCTGACGGAACGACTAGCTATGTACATGCACGCTCATACACTTTATAGTGCGGT---- 416 ******************************************************** consensus_9312#0 CCATTCGGTGTATCAGTTTTGCTTGGTTCCTATGAAAACGATGGTCCTCATTTATTCGTG 451 consensus_9312#1 ------------------------------------------------------------ consensus_9312#0 ATAGAGCCTTCTGGGCTGTCTTATGCTTATTTCGGTTGTGCCATCGGAAAAGCCAAACAA 511 consensus_9312#1 ------------------------------------------------------------ consensus_9312#0 AATGCAACAACTGAAATAGAGAAACTGAAGATGAACGACCTGTCCCCAGAAGAATTGATC 571 consensus_9312#1 ------------------------------------------------------------ consensus_9312#0 AAGGAAGCAGCCAAAATAATTTATACCGTCCATGATGAAATCAAGGATAAAAATTTCGAA 631 consensus_9312#1 ------------------------------------------------------------ consensus_9312#0 CTGGATCTTAGTTGGGTTGGTGCAAATACAAAGGGTATACATCAACCTGTTCCTCGCAAA 691 consensus_9312#1 ------------------------------------------------------------ consensus_9312#0 CTCTTTGATGAAGCGGAGACATTCGCCAAACAGGCTTTAGAAGAAGCTGATGATTTAGAT 751 consensus_9312#1 ------------------------------------------------------------ consensus_9312#0 GACGAAGTAGAATAAACTATGTACATGTATGCATTATTTTCTAAAAATGTTTT 804 consensus_9312#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||