cluster # 9313

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Schistosoma mansoni
cluster # 9313 cluster # 9313 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9313#0 length = 824 sequences # 6

consensus_9313#1 length = 326 sequences # 2
consensus_9313#2 length = 280 sequences # 1

consensusID : consensus_9313#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 824
fasta sequence

                              [TTTGTACGTTTAGACGGATGGAGTTCTAAGTTCCGTATGGTTTATACAGTTCCAATGGTTTCATCTAAGAAACTTTTTCAGTGATTAGTTCGCTGCCAACTAGGCAGTTTTAGATTACCTAGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCTGATGCCTCTATTACTGAAGTGCAGCGTTGCGTAGAAAGGTGCGAAATTCCGTTAAGTCAAGCACATGAAGTAATGCAATCTGAGGTCTCCTCATTCCAAGCAAGATTACAACTGTGTGCTTCTGAATGCGCCAATCAAGCGCGGGACAAGTTACCTTCAAATGCATCTGAGTCACAGCTGAAGAATGCTCAACGTGAAATACTAGCGTGTTCTCAAAAATGCGTGGACAATCAACTATCAATGGGGCTTCCAGCCCTTATCACTCGACTAAAAGATCAATTGCAAAAGTTGAGACAAAACCAAATTCAGATTACAAATTAGTTTGTGTAATGTAAGTATTAAAACTAAAACCATTTTAGCAAATGAATTGTATAGACCAGTTTCTTCATTTTTAATGTCAAATACAAAATTGGTACTCATGAAAAAAAAAAAAAAAA]

[+] EMBL CD113144             [TTTGTACGTTTAGACGGATGGAGTTCTAAGTTCCGTATGGTTTATACAGTTCCAATGGTTTCATCTAAGAAACTTTTTCAGTGATTAGTTCGCTGCCAACTAGGCAGTTTTAGATTACCTAGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGCTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD113267             [TTTGTACGTTTAGACGGATGGAGTTCTAAGTTCCGTATGGTTTATACAGTTCCAATGGTTTTATCTAAGAAACTTTTTCAGTGATTAGTTCGCTGCCAACTAGGCAGTTTTAGATTACCTAGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD191740             [                                                                       ACTTTTTCAGTGATTAGTTCGCTGCCAACTAGGCAGTTTTAGATTACNTAGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCTGATGCCTCTATTACTGAAGTGCAGCGTTGCGTAGAAAGGTGCGAAATTCCGTTAAGTCAAGCACATGAAGTAATGCAATCTGAGGTCTCCTCATTCCAAGCAAGATTACAACTGTGTGCTTCTGAATGCGCCAATCAAGCGCGGGACAAGTTACCTTCAAATGCATCTGAGTCACAGCTGA                                                                                                                                                                                                                                                                ]
[-] EMBL CD184266             [                                                                                                                                                                                                                          TAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGCCCACCTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCTGATGCCTTTATTACTGAAGTGCAGCGTTGCGTAGAAAGGTGCGAAATTCCGTTAAGTCAAGCACATGAAGTAATGCAATCTGAGGTCTCCTCATTCCAAGCAAGATTACAACTGTGTGCTTCTGAATGCGC                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD083679             [                                                                                                                                                                                                                                                                                                                    cacgaggCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCTGATGCCTCTATTACTGAAGTGCAGCGTTGCGTAGAAAGGTGCGAAATTCCGTTAAGTCAAGCACATGAAGTAATGCAATCTGAGGTCTCCTCATTCCAAGCAAGATTACAACTGTGTGCTTCTGAATGCGCCAATCAAGCGCGGGACAAGTTACCTTCAAATGCATCTGAGTCACAGCTGAAGAATGCTCAACGTGAAATACTAGCGTGTTCTCAAAAATGCGTGGACAATCAACTATCAATGGGGCTTCCAGCCCTTATCACTCGACTAAAAGATCAATTGCAAAAGTTGAGACAAAACCAAATTCAGATTACAAATTAGTTTGTGTAATGTAAGTATTAAAACTAAAACCATTTTAGCAAATGAATTGTATAGACCAGTTTCTTCATTTTTAATGTCAAATACAAAATTGGTACTCATGA               ]
[-] EMBL AI395644             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGT CTTCTG ATGCGCCAATCAAGCGCGGGACAAGTTACCTTCAAATGCATCTGAGTCACAGCTGAAGAATGCTCAACGTGAAATACTAGCGTGTTCTCAAAAATGCGTGGACAATCAACTATCAATGGGGCTTCCAGCCCTTATCACTCGACTAAAAGATCAATTGCAAAAGTTGAGACAAAACCAAATACAGATTACAAATTAGTTTGTGTAATGTAAGTATTAAAACTAAAACCATTTTAGCAAATGAATTGTATAGACCAGTTTCTTCATTTTTAATGTCAAATACAAAATTGGTACTCTTGTAAAAAAAAAAAAAAA]




>consensus_9313#0
TTTGTACGTTTAGACGGATGGAGTTCTAAGTTCCGTATGGTTTATACAGTTCCAATGGTT
TCATCTAAGAAACTTTTTCAGTGATTAGTTCGCTGCCAACTAGGCAGTTTTAGATTACCT
AGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGT
TGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTT
TCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAA
AAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTCAG
TGCGGTTTAAAGTGCTGTGCGGATCCTGATGCCTCTATTACTGAAGTGCAGCGTTGCGTA
GAAAGGTGCGAAATTCCGTTAAGTCAAGCACATGAAGTAATGCAATCTGAGGTCTCCTCA
TTCCAAGCAAGATTACAACTGTGTGCTTCTGAATGCGCCAATCAAGCGCGGGACAAGTTA
CCTTCAAATGCATCTGAGTCACAGCTGAAGAATGCTCAACGTGAAATACTAGCGTGTTCT
CAAAAATGCGTGGACAATCAACTATCAATGGGGCTTCCAGCCCTTATCACTCGACTAAAA
GATCAATTGCAAAAGTTGAGACAAAACCAAATTCAGATTACAAATTAGTTTGTGTAATGT
AAGTATTAAAACTAAAACCATTTTAGCAAATGAATTGTATAGACCAGTTTCTTCATTTTT
AATGTCAAATACAAAATTGGTACTCATGAAAAAAAAAAAAAAAA

consensusID : consensus_9313#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 326
fasta sequence

                              [TATATAGACGTTTGACTGTCACGCCTTGAGGTCTTTTACTTTTTTTAGATTACCTAGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCTGATG]

[-] EMBL CD132277             [TATATAGACGTTTGACTGTCACGCCTTGAGGTCTTTTACTTTTTTTAGATTACCTAGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCTGATG]
[-] EMBL AW288478             [                                                                                                                                                                   ATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTC                                 ]




>consensus_9313#1
TATATAGACGTTTGACTGTCACGCCTTGAGGTCTTTTACTTTTTTTAGATTACCTAGTGT
TCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGTTGGAT
TGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGA
TTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGA
ATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGCCAACTACTTTCAGTGCGG
TTTAAAGTGCTGTGCGGATCCTGATG

consensusID : consensus_9313#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [CGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGTTAGCAATAAGTTACTTACCAATAACATATAGGCCAACTACTTTCAGTGCGGTTTGAAGTGCTGTGCGGATCCTGATGCCTCTATTACTGAAGTG]

[-] EMBL CD135140             [CGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGTTAGCAATAAGTTACTTACCAATAACATATAGGCCAACTACTTTCAGTGCGGTTTGAAGTGCTGTGCGGATCCTGATGCCTCTATTACTGAAGTG]




>consensus_9313#2
CGAATCGACAAGTATCTGTTGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAA
ATGTTAAATGGATAAACTTTCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGA
TTATCACAATGCCATTGAAAAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAAT
ACAGGTTAGCAATAAGTTACTTACCAATAACATATAGGCCAACTACTTTCAGTGCGGTTT
GAAGTGCTGTGCGGATCCTGATGCCTCTATTACTGAAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9313#0      TTTGTACGTTTAGACGGATGGAGTTCTAAGTTCCGTATGGTTTATACAGTTCCAATGGTT 60
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      TCATCTAAGAAACTTTTTCAGTGATTAGTTCGCTGCCAACTAGGCAGTTTTAGATTACCT 120
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      -----TATATAGACGTTTGACTGTCACGCCTTGAGGTCTTTTACTTTTTTTAGATTACCT 55
                                                                                  

consensus_9313#0      AGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGT 180
consensus_9313#2      -----------------------------------------CGAATCGACAAGTATCTGT 19
consensus_9313#1      AGTGTTCTTCACTAGTCCCTGAAACTTCTACGGTTATCAGCCGAATCGACAAGTATCTGT 115
                                                               *******************

consensus_9313#0      TGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTT 240
consensus_9313#2      TGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTT 79
consensus_9313#1      TGGATTGTGTCAAAGGTCCCATCTGTATATTTCACAATTAAATGTTAAATGGATAAACTT 175
                      ************************************************************

consensus_9313#0      TCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAA 300
consensus_9313#2      TCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAA 139
consensus_9313#1      TCAGATTCGCTTCAGCGTGATATCAACAAATTACAAACTGATTATCACAATGCCATTGAA 235
                      ************************************************************

consensus_9313#0      AAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGG-------------- 346
consensus_9313#2      AAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGGTTAGCAATAAGTTA 199
consensus_9313#1      AAAGAATTAGGTAACCTGGATATTGCTTATCTCCGCAAAATACAGG-------------- 281
                      **********************************************              

consensus_9313#0      -------------------CCAACTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCT 387
consensus_9313#2      CTTACCAATAACATATAGGCCAACTACTTTCAGTGCGGTTTGAAGTGCTGTGCGGATCCT 259
consensus_9313#1      -------------------CCAACTACTTTCAGTGCGGTTTAAAGTGCTGTGCGGATCCT 322
                                         ********************** ******************

consensus_9313#0      GATGCCTCTATTACTGAAGTGCAGCGTTGCGTAGAAAGGTGCGAAATTCCGTTAAGTCAA 447
consensus_9313#2      GATGCCTCTATTACTGAAGTG--------------------------------------- 280
consensus_9313#1      GATG-------------------------------------------------------- 326
                      ****                                                        

consensus_9313#0      GCACATGAAGTAATGCAATCTGAGGTCTCCTCATTCCAAGCAAGATTACAACTGTGTGCT 507
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      TCTGAATGCGCCAATCAAGCGCGGGACAAGTTACCTTCAAATGCATCTGAGTCACAGCTG 567
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      AAGAATGCTCAACGTGAAATACTAGCGTGTTCTCAAAAATGCGTGGACAATCAACTATCA 627
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      ATGGGGCTTCCAGCCCTTATCACTCGACTAAAAGATCAATTGCAAAAGTTGAGACAAAAC 687
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      CAAATTCAGATTACAAATTAGTTTGTGTAATGTAAGTATTAAAACTAAAACCATTTTAGC 747
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      AAATGAATTGTATAGACCAGTTTCTTCATTTTTAATGTCAAATACAAAATTGGTACTCAT 807
consensus_9313#2      ------------------------------------------------------------
consensus_9313#1      ------------------------------------------------------------
                                                                                  

consensus_9313#0      GAAAAAAAAAAAAAAAA 824
consensus_9313#2      -----------------
consensus_9313#1      -----------------