cluster # 9320

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Schistosoma mansoni
cluster # 9320 cluster # 9320 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9320#0 length = 607 sequences # 5

consensus_9320#1 length = 369 sequences # 4

consensusID : consensus_9320#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 607
fasta sequence

                              [ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACCATTAGAT-AAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT]

[+] EMBL CD153454             [ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGCAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACCATTAGAT ACATGACATAGTAGATGG ACCCATTGACAAGAAGTGAACAAGATAGATTCATTCTTCCTT]
[+] EMBL CD153239             [ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTCTGACAGGTAAAATTGTTTCAGATCTATGCCATGANCATTAGATAAAATGAAAA                                                    ]
[+] EMBL CD153430             [ATGCTTCAAATAAAGACCTTCTACAATGAGCTTAAGGTATAACATTTAAACAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTACTACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTC                                                                                                                                                                       ]
[-] EMBL CD153208             [   gTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAANCAACTACATTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCCTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGAT AAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT]
[-] EMBL CD151638             [                                                         tTTGTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAATAATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTTAAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAGTCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCTTTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGAT AAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTT ]




>consensus_9320#0
ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATT
GTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAAT
AATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTT
AAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAG
TCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATT
ATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATA
CAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCT
AACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGAT
TTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACCA
TTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATT
TTTCTTT

consensusID : consensus_9320#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 369
fasta sequence

                              [TTCGACAATTTTCCGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT]

[+] EMBL CD161272             [TTCGACAATTTTCCGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTT ]
[+] EMBL CD111202             [       ATTTTCTGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATNAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCT  ]
[-] EMBL CD111176             [        TTTTCTGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAGAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTCTTT]
[+] EMBL CD116992             [        TTTTCCGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCATTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAATTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATTTTTTTT ]




>consensus_9320#1
TTCGACAATTTTCCGTACCTTTTTCTATCAGCTCTCCATATTTATCTTCAACGTTTCCCA
TTATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAA
TACAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCAT
CTAACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATG
ATTTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGAC
AATTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCA
TTTTTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9320#0      ATGTTTCAAATAAAGACCTTCTACAATGAGCTTAAGATATAACATTTAAACAACTACATT 60
consensus_9320#1      ------------------------------------------------------------
                                                                                  

consensus_9320#0      GTTGACAAGTGACAACTATCACTCTATTGAGATACTAGATCTCAACTATGACAAATAAAT 120
consensus_9320#1      ------------------------------------------------------------
                                                                                  

consensus_9320#0      AATTAGACAGAATATTTTAAAATCTTTAATCTTACGATTAACATTCTCTGCATCGTTCTT 180
consensus_9320#1      ------------------------------------------------------------
                                                                                  

consensus_9320#0      AAAACACTTCTTTATCTCAGATGATTTTGAACTGTCCATATAATGTTTTGCTATTAATAG 240
consensus_9320#1      ----------------------------------------------------TTCGACAA 8
                                                                           *  * * 

consensus_9320#0      TCATGTGAATTGTTCTGTTTATACAACCACTTACCATATTTATCTTCAACGTTTCCCATT 300
consensus_9320#1      TTTTCCGTACCTTTTTCT------ATCAGCTCTCCATATTTATCTTCAACGTTTCCCATT 62
                      *  *  * *   ** * *      * *  **  ***************************

consensus_9320#0      ATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATA 360
consensus_9320#1      ATCTTCACACATTCTGTATTTATTTCATCGATAATCTGTAATTTAAATACTCTAGTAATA 122
                      ************************************************************

consensus_9320#0      CAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCT 420
consensus_9320#1      CAATTGAAATACTCTTCAATCGATGCCGTTTCATTAAAAGCTCTGTTGTTCATTTCATCT 182
                      ************************************************************

consensus_9320#0      AACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGAT 480
consensus_9320#1      AACTTCTCTTGAAATTGACTCTTTTCATTAGTTATTAGTCGATCGTAATTCATCAATGAT 242
                      ************************************************************

consensus_9320#0      TTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACCA 540
consensus_9320#1      TTTTTAATTCCATAGATACTTTTTGACAGGTAAAATTGTTTCAGATCTATGCCATGACAA 302
                      ********************************************************** *

consensus_9320#0      TTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATT 600
consensus_9320#1      TTAGATAAATGAAAAAGTAGATGGAACAAATTGACAAGAAGTGAACAAGATAGATTCATT 362
                      ************************************************************

consensus_9320#0      TTTCTTT 607
consensus_9320#1      TTTCTTT 369
                      *******