These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1164 fasta sequence [GGGAGGGAAAAGTTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAA--AGAATAACTACATATTCGTCAATTC-CGGAAAAAAGACGTGC-TACTCGTTGAGAGCGTTTAACTATGGTGTCG-GTAATAGATGTGCACGTCACNGAGAAAGTGTCTCCAATAGTTGATTCCAGNGGGGTCGTTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGAATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAGGTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTTGAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCAGTGAGGTCACTAAATTGATCACTGTGAGATGAACGGATTACTGGAAGACGATAATCAATAACCCAGTTCAAAGCCTTACGACCCTGATGTGCATTTTGTTTACTCATACTCACAGCTGACATTGCAGTAAGTGAGAACGCTTTGACTGAAATTGAATGCTCTAGAACAGTCCAATCTGCGTTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCGATATTTACTGTGTCAGAGACCATTCGTTTGTTCTGAACTTGAATACAACTATATTCCACTGCCTTCAGTTGACCCATGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGACGATTGACAACATCTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACAATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGAAAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCATTAACGGTCTAACATGTCAATGAATGTTAA] [-] EMBL CD170830 [GGGAGGGAAAAGTTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAA AGAATAACTACATATTCGTCAATTC CGGAAAAAAGACGTGC TACTCGTTGAGAGCGTTTAACTATGGTGTCG G ] [+] EMBL CD196790 [ TTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAANNAGAATAACTACATATTCGTCAATTCNCGGAAAAAAGACGTGCNTACTCGTTGAGAGCGTTTAACTATGGNGTCGTGTAATAGATGTGCACGTCACNGAGAAAGTGTCTCCAATAGTTGATTCCAGNGGGGTCGTTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGAATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAGGTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTTGAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCAGTGAGGTCACTAAATTGATCACTGTGAGATGAACGGATTACTGGAAGACG ] [+] EMBL CD196525 [ TTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAA AGAATAACTACATATTCGTCAATTC CGGAAAAAAGACGTGC TACTCGTTGAGAGCGTTTAACTATGGTGTCG GTAATAGATGTG ACGTCAC GAGAAAGTGTCTCCAAT GTTGATTCCAG GGGGTCGTTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGAATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAGGTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTTGAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTAC ] [+] EMBL CD164354 [ TAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCAGTGAGGTCACTAAA TGATCACTGTGAGATGAACGGATTACTGGAAGACGATAATCAATAACCCAGTTCAAAGCCTTACGACCCTGATGTGCATTTTGTTTACTCATACTCACAGCTGACATTGCAGTAAGTGAGAACGCTTTGACTGAAATTGAATGCTCTAGAACAGTCCAATCTGCGTTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCGATAT ] [-] EMBL CD121801 [ TTGACTGAGATTGAATGCTCTAGAACAGTCCAATCTGCGTTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCGATATTTACTGTGTCAGAGACCATTCGTTTGTTCTGAACTTGAATACAACTATATTCCACTGCCTTCAGTTGACCCATGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGACGATTGACAACATCTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACA ] [-] EMBL CD061074 [ CATTCGTTTGTTCTGAACTTGAATGCAACTATATTCCACTGCCTTCAGTTGACCCACGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGACGATTGATAACATCTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACAATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGAAAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCATTAACGGTCTAACATGTCAATGAATGTTAA] [-] EMBL CD072727 [ TGTACAGAACTGACAACATCATGCTAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACAATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGAAAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCATTAACGGTCTgtaaatc ] consensusID : consensus_9321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [TGTTACTAGTAAACACCATTTGATTTCTCTAAATTTGCTCCTGCAGTATGTTTATGTGTAATCAAGTCTGACATCCAGCATACTGATAAACAAAACCCATTTGCGATACTCTCTTTTGCTTCACGTGATTTTGATTTATGTTACACTCTACTCGTATGACTATTAAAATGATTTAGTAGACCACTACCAAATCTGCATCTTTGACCATAACTATCAGCTTTATTTGTTTTACAGGACTGTTCTAGAGCATTCAATTTCAGTCAAAGCGTTCTCACTTATTGCAATGTCAGCTGTGAGTATGAGTAAACAAAATGCACATCAGGTACGTCCTAAAGTTTTGACATTGTTTGTTCGATTTCTGTATCGTACTGAGATATGTCACATTTAAATTACAAGACAAGTAAAATAAGTACTTCGGTCATCGTTTCGTCATTCCATTCTGTACTTTTTACCTTTGTAAACTATAGCAGAATGAATTTATGAACATTAAACAAAAAAGTGATGTTATTGCAAATACAGTT] [+] EMBL CD134209 [TGTTACTAGTAAACACCATTTGATTTCTCTAAATTTGCTCCTGCAGTATGTTTATGTGTAATCAAGTCTGACATCCAGCATACTGATAAACAAAACCCATTTGCGATACTCTCTTTTGCTTCACGTGATTTTGATTTATGTTACACTCTACTCGTATGACTATTAAAATGATTTAGTAGACCACTACCAAATCTGCATCTTTGACCATAACTATCAGCTTTATTTGTTTTACAGGACTGTTCTAGAGCATTCAATTTCAGTCAAAGCGTTCTCACTTATTGCAATGTCAGCTGTGAGTATGAGTAAACAAAATGCACATCAGGTACGTCCTAAAGTTTTGACATTGTTTGTTCGATTTCTGTATCGTACTGAGATATGTCACATTTAAATTACAAGACAAGTAAAATAAGTACTTCGGTCATCGTTTCGTCATTCCATTCTGTACTTTTTACCTTTGTAAACTATAGCAGAATGAATTTATGAACATTAAACAAAAAAGTGATGTTATTGCAAATACAGTT] consensusID : consensus_9321#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 228 fasta sequence [ACACCTTGGAAGTCGNTATTTACTGTGTCAGAGNCCATTCGTTTGTTNTGNAGGTTGAATACGAGTATATTCCACTGCCTTCAGTTGACCCATGNGAAANAANGGCCNTGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGANGNTTGACAACATNTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGA] [-] EMBL AA559392 [ACACCTTGGAAGTCGNTATTTACTGTGTCAGAGNCCATTCGTTTGTTNTGNAGGTTGAATACGAGTATATTCCACTGCCTTCAGTTGACCCATGNGAAANAANGGCCNTGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGANGNTTGACAACATNTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9321#0 GGGAGGGAAAAGTTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAAAGAATAACTA 60 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 CATATTCGTCAATTCCGGAAAAAAGACGTGCTACTCGTTGAGAGCGTTTAACTATGGTGT 120 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 CGGTAATAGATGTGCACGTCACNGAGAAAGTGTCTCCAATAGTTGATTCCAGNGGGGTCG 180 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 TTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGA 240 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 ATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAG 300 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 GTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTT 360 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 GAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCA 420 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 GTGAGGTCACTAAATTGATCACTGTGAGATGAACGGATTACTGGAAGACGATAATCAATA 480 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------TGTTACTAGTAA 12 consensus_9321#0 ACCCAGTTCAAAGCCTTACGACCCTGATGTGCATTTTGTTTACTCATACTCACAGCTGAC 540 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ACACCATTTGATTTCTCTAAATTTGCTCCTGCAGTATGTTTATGTGTAATCAAGTCTGAC 72 consensus_9321#0 ATTGCAGTAAGTGAGAACGCTTTGACTGAAATTGAATGCTCTAGAACAGTCCAATCTGCG 600 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ATCCAGCATACTGATAA-------ACAAAACCCATTTGCGATACTCTCTTTTGCTTCACG 125 consensus_9321#0 TTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCG 660 consensus_9321#2 ---------------------------------------------ACACCTTGGAAGTCG 15 consensus_9321#1 TGATTTTGATTTATGTTACACTCTACTCGTATG--ACTATTAAAATGATTTAGTAGACCA 183 * * * * * consensus_9321#0 ATATTTA--CTGTGTCAGAGACCATTCGTTTGTTCTGAAC-TTGAATACAACTATATTCC 717 consensus_9321#2 NTATTTA--CTGTGTCAGAGNCCATTCGTTTGTTNTGNAGGTTGAATACGAGTATATTCC 73 consensus_9321#1 CTACCAAATCTGCATCTTTGACCATAACTATCAGCTTTATTTGTTTTACAGGACTGTTCT 243 ** * *** ** * **** * * * * * *** * *** consensus_9321#0 ACTGCCTTCAGTTGACCCATGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTG 777 consensus_9321#2 ACTGCCTTCAGTTGACCCATGNGAAANAANGGCCNTGAAGAGTTAATCAGTTTGCAACTG 133 consensus_9321#1 AGAGCATTCAATTTCAGTCAAAGCGTTCTCACTTATTGCAATGTCAGCTGTGAGTATGAG 303 * ** **** ** * * * * * * ** * * * consensus_9321#0 TGCATAGCACCACCGGTAAGATCGACCTGACGATTGACAACATCTATGTTTAGTACGTTT 837 consensus_9321#2 TGCATAGCACCACCGGTAAGATCGACCTGANGNTTGACAACATNTATGTTTAGTACGTTT 193 consensus_9321#1 TAAACAAAATGCACATCAGGTACGTCCTAAAGTTT--TGACATTGTTTGTTCG-ATTTCT 360 * * * * * * * ** *** * * ** **** * ** * * * * consensus_9321#0 GGATTGTA-TGGGTTGGG--ATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGA 894 consensus_9321#2 GGATTGTA-TGGGTTGGG--ATATTTAAATTGTACAGA---------------------- 228 consensus_9321#1 GTATCGTACTGAGATATGTCACATTTAAATTACAAGACAAGTAAAATAAGTACTTCGGTC 420 * ** *** ** * * * * ********* * consensus_9321#0 TGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGG 954 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ATCGTTTCGTCATTCCATTCTGTACTTTTTACCTTTGTAAACTATAGCAGAATGAATTTA 480 consensus_9321#0 AAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACA 1014 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 TGAACATTAAACAAAAAAGTGATGTTATTGCAAATACAGTT------------------- 521 consensus_9321#0 ATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGA 1074 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 AAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCA 1134 consensus_9321#2 ------------------------------------------------------------ consensus_9321#1 ------------------------------------------------------------ consensus_9321#0 TTAACGGTCTAACATGTCAATGAATGTTAA 1164 consensus_9321#2 ------------------------------ consensus_9321#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||