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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1015 fasta sequence
[TGCCAGCGACGATTCCTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCGGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGCAAATGCTTCATGTCAGACATTAGAACATTACAAACTACAACAAACACTTAAAAAACCCACTTTAGATGCTGTAGTTCAATCTGGTGTTATCACTAAGAATAATTCCACTCAGTCGGAATACATCACAGAAACCGTCGTGAAAATGGACATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG-AG-ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGCTGAACTGATACAAGAACAACCGGTATATGTGAAAGCAATAGAAACTCAGGATGTACCGAT]
[+] EMBL CD062170 [TGCCAGCGACGATTCCTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCGGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGCAAATGCTTCATGTCAGACATTAGAACATTACAAACTACAACAAACACTTAAAAAACCCACTTTAGATGCTGTAGTTCAATCTGGTGTTATCACTAAGAATAATTCCACTCAGTCGGAATACATCACAGAAACCGTCGTGAAAATGGACATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAA ]
[+] EMBL CD059546 [ CATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACGGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAGTAGGCAAGGTTGAAATGACA ]
[+] EMBL CD059457 [ CATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCA ]
[-] EMBL CD141822 [ GGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTA ]
[-] EMBL CD064206 [ ATACTGAAAGAAATAAGAAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGCATGGCAGCACACAGTAAACACAAATGA GCCGCGTGTCAAATAGGTAGGATAACAA TAA GCTAGCACAG AGNATGTC ]
[-] EMBL CD184316 [ CAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAG AG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAANANAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAGACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGCTG ]
[-] EMBL CD163628 [ ACAATTAACGCTAGCACAGAAG ATGTCACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAATATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTTAAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACATAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCC ]
[+] EMBL CD065361 [ TTCAGCAAACCAATACGAAATCCAAAAAGCATCAACCTCTAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGATGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGTCACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCGCGTGTGGGAAAAGAAAACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGCTGAACTGATACAAGAACAACCGGTATATGTGAAAGCAATAGAAACTCAGGATGTACCGAT]
consensusID : consensus_9322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[CAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACATACAGAAGTAAAGAATACTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCAGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGC]
[-] EMBL CD154391 [CAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAATAGGACAGGTTACACAAACAACTGGAACACATACAGAAGTAAAGAATACTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCAGTTAAAGAAGTATTATGTCAAATAGGTCAAATTACAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9322#0 TGCCAGCGACGATTCCTGAAAGAAAACAAGTAAGAAATGCAATAACTCAAATTGGAGTAT 60
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 CAAAAGTCGATGCAGGCACACAAGATGACTATCATGGATACAGTCCTAAGCGTTCGGTTA 120
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAGAAGTATTATGTCAAATAGGTCAAATTACAGCAAATGCTTCATGTCAGACATTAGAAC 180
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 ATTACAAACTACAACAAACACTTAAAAAACCCACTTTAGATGCTGTAGTTCAATCTGGTG 240
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TTATCACTAAGAATAATTCCACTCAGTCGGAATACATCACAGAAACCGTCGTGAAAATGG 300
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 ACATACCTGAATCACAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAA 360
consensus_9322#1 --------------CAAAAAGCTGCACGAAAATATAGCGTACTAGATGCCATCTGTCAAA 46
**********************************************
consensus_9322#0 TAGGACAGGTTACACAAACAACTGGAACACAAACAGAAGTAAAGAATACTGAAAGAAA-T 419
consensus_9322#1 TAGGACAGGTTACACAAACAACTGGAACACATACAGAAGTAAAGAATACTGAAAGAAAAC 106
******************************* **************************
consensus_9322#0 AAG--AAAAATCTCGGTGTACAAGCAGAAATGAAAAAGGC--ATGGCAGCACACAGTAAA 475
consensus_9322#1 AAGTAAGAAATGCAATAACTCAAATTGGAGTATCAAAAGTCGATGCAGGCACACAAGATG 166
*** * **** *** * * * *** * *** ******* *
consensus_9322#0 CACAAATGAGGCCGCATGTCAAATAGGTAGGATAACAATTAACGCTAGCACAGAGATGTC 535
consensus_9322#1 -ACTATCATGGATACAGTCCTAAGCGTTCAGTTAAAGA--AGTATTATGTCAAATAGGTC 223
** * ** ** * ** * * * *** * * ** ** * * ***
consensus_9322#0 ACCAATGATGGTCAGTAAGGAAGAAGTGATAAAACAAGATATTAAAAAAAGTGATATAAT 595
consensus_9322#1 A--AATTACAGC------------------------------------------------ 233
* *** * *
consensus_9322#0 ATGTCAAATAGGCAAGGTTGAAATGACAAAATCAACACAAACTAACGCAACAGAAAAGTT 655
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AAAAACTACAACAATTAAACATTCAGCAAACCAATACGAAATCCAAAAAGCTTCAACCTC 715
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TAGTCAGGTAGATGTTTTAACGGAAAAGACATATAAACGTACGCTTAAATCTGTCAACGA 775
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TGTTATATGTCAAGTCGGACAGGTAAACCATGAAGTATCCACACAGTCAGTTGAATACGT 835
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 CACTACTAGACCGGCACACAAGGATACTGGCATTGATCCGATTCACGTGTGGGAAAAGAA 895
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 AACGGCCAACGATGTCGTGACGCAAACAGGAATTGTTCACACATCGAAAGTAACACAGGC 955
consensus_9322#1 ------------------------------------------------------------
consensus_9322#0 TGAACTGATACAAGAACAACCGGTATATGTGAAAGCAATAGAAACTCAGGATGTACCGAT 1015
consensus_9322#1 ------------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||