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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 952 fasta sequence
[GGCCATAATTCGGCACGCAGGGTCTACTTACTTNTGGTCTGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTCTAAGA-TTGTTATAATTATAAA]
[+] EMBL CD081185 [GGCCATAATTCGGCACGCAGGGTCTACTTACTTNTGGTCTGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCANATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTT AAAAATTTC AGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGGTGGTNTAGA TGTAANTGTGTACCATTCTAAGA TTGTTATAATTATA ]
[-] EMBL CD074973 [ CATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTGAATGTTGTTTTAGATTGTAAATGTGTACCTTTCTAAGA TTGAAGTAATTATA ]
[-] EMBL CD075011 [ CTACTTCCTTTGTTCTCATCGTGTGTTATGCTTGTTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTCTAAGA TTGGAATAATTATAA ]
[-] EMBL CD075823 [ TAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCTTCTTTTCTATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTTTAAGATTTGTTATAATTATAAA]
[-] EMBL AI977040 [ ACTTTAATGGGCATACTTGCTATATGGAATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATTTCCATATCCATATGAATTATTACTTATAGTATTAATAGGGCTGTTAAACTTTTTAACTCTTCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATCCCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAGATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTGCTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCATTCTAAGATTTGTTATAATTATAAA]
consensusID : consensus_9324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence
[CAGAAACAATCNNNANAAGAGTTGTCT-CG-GTTTGTGACAGGGGCAATTTCCATGACTCATGTACTGACGTACATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGGGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGGTACTTTTATGGGCA]
[+] EMBL CD195991 [CAGAAACAATCNNNANAAGAGTTGTCTCCGTGTTTGTGACAGGGGCAATTTCCATGACTCATGTACTGACGTACATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGGGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGT ]
[+] EMBL CD082211 [ TCT CG GTACGAGGCAGGGGCAATTTCCATGACTCATGTACTGACGTTCATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGGCTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCAAATTTTCGCTATTGGATCTCATCTTTTGGGGGTACTTTTATGGGCA]
[-] EMBL CD195680 [ TGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCATACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACA ]
consensusID : consensus_9324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[GGCCAGAATCGCACGAGGGCGATCTCAATAATAACTTCTTCCAGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGT]
[+] EMBL CD083563 [GGCCAGAATCGCACGAGGGCGATCTCAATAATAACTTCTTCCAGTTTCAGTTATCCTCATATGAATTTGGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTTATTATATCTGTCATACTTACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGTCGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTTTGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACTTCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGCCCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAAAACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGATGCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9324#1 CAGAAACAATCNNNANAAGAGTTGTCTCGGTTTGTGACAGGGGCAATTTCCATGACTCAT 60
consensus_9324#2 -----------------------------------------------GGCCA-GAATCGC 12
consensus_9324#0 ------------------------------------------------------------
consensus_9324#1 GTACTGACGTACATACGTTTCTATGATCATCCTCCGTTTCAGTTATCCTCATATGAATTT 120
consensus_9324#2 ACGAGGGCGATCTCAA----TAATAACTTCTTCCAGTTTCAGTTATCCTCATATGAATTT 68
consensus_9324#0 ------------------------------------------------------------
consensus_9324#1 GGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTT-ATTATATCTGTCATACT 179
consensus_9324#2 GGAAAACTATTTATTAGGCTGGACGGCTTGTTAGAAGCAGTT-ATTATATCTGTCATACT 127
consensus_9324#0 --------------------------------GGCCATAATTCGGCACGCAGGGTCTACT 28
* * ** * * ****
consensus_9324#1 TACTTTGGTCATGTACTTTGGGGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGT 239
consensus_9324#2 TACTTTGGTCATGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGT 187
consensus_9324#0 TACTTNTGGTCTGTACTTTGGAGTTGTCTTGGATGATATATTTAGTGGAGATATGTTAGT 88
***** * ********** **************************************
consensus_9324#1 CGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTT 299
consensus_9324#2 CGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTT 247
consensus_9324#0 CGTACTTGATGTTCAATACTGGAAAGATCGTATATTTAACTGGATAAGTTTGAGAAATTT 148
************************************************************
consensus_9324#1 TGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACT 359
consensus_9324#2 TGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACT 307
consensus_9324#0 TGTAATAGCTCCTTTGGCTGAAGAACTTATCTTCCGTGCGTGTGTTACATTTCATCTACT 208
************************************************************
consensus_9324#1 TCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGC 419
consensus_9324#2 TCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGC 367
consensus_9324#0 TCCTTTGTTCTCATCGTGTGTTATGCTTTGTTTCGTTAGTTCATTATTTTTCTCTCTAGC 268
************************************************************
consensus_9324#1 CCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAA 479
consensus_9324#2 CCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAA 427
consensus_9324#0 CCATTTTCATCATGTTTTTGAATCCGTGAAAAGTGGTCAAGATCTGCAGTCTGCATTTAA 328
************************************************************
consensus_9324#1 AACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGAT 539
consensus_9324#2 AACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGAT 487
consensus_9324#0 AACTTCACTTTTCCAAGTGTTTTACACAACATTATTTGGAATGTATTCTGGATTTCTGAT 388
************************************************************
consensus_9324#1 GCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGG 599
consensus_9324#2 GCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGT----------- 536
consensus_9324#0 GCTAAGAACTGGTAATATTGCTTCAAGTATTGTTACGCACTCCTTGTGTAACTTCTTCGG 448
*************************************************
consensus_9324#1 CTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCA 659
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 CTTACCAGATTTAATCGGTGCCATCGAAAGAGCCAAGTATCGTTGGGGTATCTCTGGTCA 508
consensus_9324#1 AATTTTCGCTATTGGATCTCATCTTTTGGGGGTACTTTTATGGGCA-------------- 705
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 AATTTTCGCTATTGGATCTCATCTTTTGGGGTTACTTTTATGGGCATACTTGCTGTATGG 568
consensus_9324#1 ------------------------------------------------------------
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 AATAACTGAAACAAAATGGTCCTCACCAAACAACTGTCATTGTAATTGGTATTGAGAATT 628
consensus_9324#1 ------------------------------------------------------------
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 TCCATATCCATATGAATTATTACTTATAGTATTAATAGGACTGTTAAACTTTTTAACTCT 688
consensus_9324#1 ------------------------------------------------------------
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 TCTTTTCAATTCGGCTGAAAACTCTTATCTTATATATAAATATTAAATATTTATATAATC 748
consensus_9324#1 ------------------------------------------------------------
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 CCGGTAAACATAGCAAATTACAGTTCATCGAAGGTACAAATGTAATAGGAATTAAAACAG 808
consensus_9324#1 ------------------------------------------------------------
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 ATTTTTAAAAAATTTCAAGGCCTCACCTCATATTCGCAATTGTATTTAAATTTTGTGCTG 868
consensus_9324#1 ------------------------------------------------------------
consensus_9324#2 ------------------------------------------------------------
consensus_9324#0 CTAAGTATTTACTTGTACGTCATTAGTTTATTTGTTGTTTTAGATTGTAAATGTGTACCA 928
consensus_9324#1 ------------------------
consensus_9324#2 ------------------------
consensus_9324#0 TTCTAAGATTGTTATAATTATAAA 952
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||