cluster # 9327

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Schistosoma mansoni
cluster # 9327 cluster # 9327 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9327#0 length = 925 sequences # 6
consensus_9327#1 length = 503 sequences # 1

consensus_9327#2 length = 152 sequences # 1
consensus_9327#3 length = 131 sequences # 1

consensusID : consensus_9327#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 925
fasta sequence

                              [GTTATTATTATTGTATGCATGTGTGTGTGTGTGTGTGTGCAAGAGCACTATGCTTTGCTTATTGTGCCTATACTTAAATGTTCATTATTGACTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTATGACTTT-ATAAGTTTGATAT-AGTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTNTTTCATCAGCTGTCTCACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTNGATGGGGCTTA-TCTATNNTGNNNGATGNATCTNCTCTTTGNNTTGGTCTATNTCTGCCAGNTGNTTTTTTCCCCTTC-TTTCACATGAAATAGAAGAAATATGGGTCACAAAGNTANNTAT-ATCATNNAT-ATACGGCTTNATGNTACTGCCTAGCAGTAAAT-AGAGAAAATAAATGTGAT]

[+] EMBL CD082019             [GTTATTATTATTGTATGCATGTGTGTGTGTGTGTGTGTGCAAGAGCACTATGCTTTGCTTATTGTGCCTATACTTAAATGTTCATTATTGACTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTATGACTTT ATAAGTTTGATAT ATTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTNTTTCATCAGCTGTCTCACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTNGATGGGGCTTA TCTATNNTGNNNGATGNATCTNCTCTTTGNNTTGGTCTATNTCTGCCAGNTGNTTTTTTCCCCTTC TTTCACATGAAATAGAAGAAATATGGGTCACAAAGNTANNTAT ATCATNNAT ATACGGCTTNATGNTACTGCCTAGCAGTAAAT AGAGAAAATAAATGTGA ]
[+] EMBL CD197223             [                                                      TTGCTTATTGTGCCTATACTTAAATGTTCATTATTGACTTCTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTATGACTTT ATAAGTTTGATAT AGTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD197139             [                                                                                           CTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTTTCTTCTAGGACTTTAAAAAGTTGAAAAT AGTTTTATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGGATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD197119             [                                                                                           CTTTTAAAGTTTTATTGTTTTCGTTACCTTTTCTATCTTCTAAGACTTTAATAAG TTGAAATAAGTTTAATGTACTACTGATAAGTAGTAGTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCATACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAGAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD075634             [                                                                                                                                                                                                                                                                                   tTTCATCATCATCATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTCACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTTGAT GGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTGTTTTGTTCTATTTCTGCCAGTTG TTTTTTCCCCTTCTTTTCACATGAAATAGAAGAATAATGGTTCACAAAG TAATAATAATCAT AATAATACCGCTTATTGTTACTG CTAGCAGTTAATAAGAGAAATAAAATGTGAT]
[+] EMBL CD125974             [                                                                                                                                                                                                                                                                                               CATCATCCTTCTTCTTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAACCTACAATATGTTCACATGGATATACTGACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTA                                                                                                                                                                                                                                                                                                                                                                                                                           ]




>consensus_9327#0
GTTATTATTATTGTATGCATGTGTGTGTGTGTGTGTGTGCAAGAGCACTATGCTTTGCTT
ATTGTGCCTATACTTAAATGTTCATTATTGACTTTTAAAGTTTTATTGTTTTCGTTACCT
TTTCTATCTTCTATGACTTTATAAGTTTGATATAGTTTTATGTACTACTGATAAGTAGTA
GTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCA
TACACACTTATATATGCTGTGAATTCATGAATTATTCATCATCATCATCATCCTTCTTCT
TTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTATG
TGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGTT
CACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTT
GGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTTA
TATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTG
AATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTNTTTCATCAGCTGTCTCA
CTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTATA
CATGCATACTTACTTACATACAGTTNGATGGGGCTTATCTATNNTGNNNGATGNATCTNC
TCTTTGNNTTGGTCTATNTCTGCCAGNTGNTTTTTTCCCCTTCTTTCACATGAAATAGAA
GAAATATGGGTCACAAAGNTANNTATATCATNNATATACGGCTTNATGNTACTGCCTAGC
AGTAAATAGAGAAAATAAATGTGAT

consensusID : consensus_9327#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [TAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTTGATGGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTGAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGAAATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATCCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTCACTGAATATGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTAACATGCATACTACTTACATACAGTTTGATGGCTTTATTCTATTT]

[-] EMBL CD196461             [TAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTTGATGGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTGAATGATAATTATGTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGAAATCAAGTAATCTACAATATGTTCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATCCAATGCTTGCTTATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTCACTGAATATGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTAACATGCATACTACTTACATACAGTTTGATGGCTTTATTCTATTT]




>consensus_9327#1
TAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATACAGTTTGATGGCTTTAT
TCTATTTTGTTGAATGTATCTTCTCTTTGAATGATAATTATGTGTTTGGCGGCAACTAAA
AAAATGAGAGTAGTAATGAAATCAAGTAATCTACAATATGTTCACATGGATATACTAACA
CACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTTTGGTTTGTGCATGTACGTG
ATGCTAAGTGTATCTGTTGTATACACATCCAATGCTTGCTTATATCAATAGGGGAGGTTG
TCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGTGAATCAATTGATTCCTCTG
AATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTCACTGAATATGCCCTGATCA
TCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTAACATGCATACTACTTACATAC
AGTTTGATGGCTTTATTCTATTT

consensusID : consensus_9327#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 152
fasta sequence

                              [TCTCTTTGTTTTGTTCCATTTCTGCNAGTTGTTTTTTCCCCTTCTTTTCACATGATATAGAAGATTAATGGTTCACAAAGTAATAATAATCATAATANTANCGCTTATTGTTACTGCTAGCAGTTAATAAGAGTAATANNATGTGATAATTT]

[+] EMBL BE505150             [TCTCTTTGTTTTGTTCCATTTCTGCNAGTTGTTTTTTCCCCTTCTTTTCACATGATATAGAAGATTAATGGTTCACAAAGTAATAATAATCATAATANTANCGCTTATTGTTACTGCTAGCAGTTAATAAGAGTAATANNATGTGATAATTT]




>consensus_9327#2
TCTCTTTGTTTTGTTCCATTTCTGCNAGTTGTTTTTTCCCCTTCTTTTCACATGATATAG
AAGATTAATGGTTCACAAAGTAATAATAATCATAATANTANCGCTTATTGTTACTGCTAG
CAGTTAATAAGAGTAATANNATGTGATAATTT

consensusID : consensus_9327#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 131
fasta sequence

                              [TCACATTTNATTCCCTAATTAACTGCTAGCAGTAACAATAAGCGGTATTATTATGATTATTATNACTTTGTGAACCATTATTCTTCTATTTCATGTGAAAAGAAGGGGAAAATAACAACTGGGCAGAAATA]

[+] EMBL AA999641             [TCACATTTNATTCCCTAATTAACTGCTAGCAGTAACAATAAGCGGTATTATTATGATTATTATNACTTTGTGAACCATTATTCTTCTATTTCATGTGAAAAGAAGGGGAAAATAACAACTGGGCAGAAATA]




>consensus_9327#3
TCACATTTNATTCCCTAATTAACTGCTAGCAGTAACAATAAGCGGTATTATTATGATTAT
TATNACTTTGTGAACCATTATTCTTCTATTTCATGTGAAAAGAAGGGGAAAATAACAACT
GGGCAGAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      GTTATTATTATTGTATGCATGTGTGTGTGTGTGTGTGTGCAAGAGCACTATGCTTTGCTT 60
consensus_9327#1      ------------------------------------------------------------
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      ATTGTGCCTATACTTAAATGTTCATTATTGACTTTTAAAGTTTTATTGTTTTCGTTACCT 120
consensus_9327#1      ------------------------------------------------------------
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      TTTCTATCTTCTATGACTTTATAAGTTTGATATAGTTTTATGTACTACTGATAAGTAGTA 180
consensus_9327#1      ------------------------------------------------------------
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      GTAGTAGTGGGAATCGGGATGATAATGATGTTATATTTTCTTATTTGAATTTCTGCGCCA 240
consensus_9327#1      ------------------------------------------------------------
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ----------------------------------------------------------TC 2
consensus_9327#0      TACACACTTATATATGCTGTGAATTCATGAATTATTCAT-CATCATCATCATCCTTCTTC 299
consensus_9327#1      -----------------TAATGTTTAGTGAACTAACTATACATGCATACTTACTTACATA 43
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      TCTTTGTTTTGTTCCATTTCTGCNAGTTGTTTTTTCCCCTTCTTTTCACATGATA--TAG 60
consensus_9327#0      TTTTTCTATGGATGAATTGTGGTAAGCAAAGAAAAACGAAAGTGAAGCAATGATAATTAT 359
consensus_9327#1      CAGTTTGATGGCTTTATTCTATTTTGTTGAATGTATCTTCTCTTTG--AATGATAATTAT 101
consensus_9327#3      -----------TCACATTTNATTCCCTAATTAACTGCTAGCAGT----AACAATAAGCGG 45
                                     ***                  *            *  ***     

consensus_9327#2      AAGATTAATGGTTCACAAAGTAATAATAATCATAATANTANCGCTTATTGT-TACTGCTA 119
consensus_9327#0      GTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGATATCAAGTAATCTACAATATGT 419
consensus_9327#1      GTGTTTGGCGGCAACTAAAAAAATGAGAGTAGTAATGAAATCAAGTAATCTACAATATGT 161
consensus_9327#3      TATTATTATGATTATTATNACTTTGTGAACCATTATTCTTCTATTTCATGT-------GA 98
                           *   *      *      *   *    * **         *  * *         

consensus_9327#2      GCAGTTAATAAGAGTAATANNATGTGATAATTT--------------------------- 152
consensus_9327#0      TCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTT 479
consensus_9327#1      TCACATGGATATACTAACACACACACACATTTGTGTATGTATCATATTTTGTTTCTTTTT 221
consensus_9327#3      AAAGAAGGGGAAAATAACAACTGGGCAGAAATA--------------------------- 131
                        *       * * *** *       * *  *                            

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      TGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATTCAATGCTTGCTT 539
consensus_9327#1      TGGTTTGTGCATGTACGTGATGCTAAGTGTATCTGTTGTATACACATCCAATGCTTGCTT 281
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      ATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGT 599
consensus_9327#1      ATATCAATAGGGGAGGTTGTCTCCCTTCATTGACAATAACAAGTAAGAAATTGTCTATGT 341
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      GAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTNTTTCATCAGCTGTCTC 659
consensus_9327#1      GAATCAATTGATTCCTCTGAATATCGATCAAACTCAATTGGTTTTTTCATCAGCTGTCTC 401
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      ACTGAATATTGCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTAT 719
consensus_9327#1      ACTGAATAT-GCCCTGATCATCATTATCAGTGAATGTGTAATGTTTAGTGAACTAACTA- 459
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      ACATGCATACTTACTTACATACAGTTNGATGGGGCTTATCTATNNTGNNNGATGNATCTN 779
consensus_9327#1      ACATGCATACT-ACTTACATACAGTTTGATGGCTTTATTCTATTT--------------- 503
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      CTCTTTGNNTTGGTCTATNTCTGCCAGNTGNTTTTTTCCCCTTCTTTCACATGAAATAGA 839
consensus_9327#1      ------------------------------------------------------------
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      ------------------------------------------------------------
consensus_9327#0      AGAAATATGGGTCACAAAGNTANNTATATCATNNATATACGGCTTNATGNTACTGCCTAG 899
consensus_9327#1      ------------------------------------------------------------
consensus_9327#3      ------------------------------------------------------------
                                                                                  

consensus_9327#2      --------------------------
consensus_9327#0      CAGTAAATAGAGAAAATAAATGTGAT 925
consensus_9327#1      --------------------------
consensus_9327#3      --------------------------