These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 613 fasta sequence [TATGTAGTCTATCTGGTGGAGTAAATCCAGCCGTATGGGAAGATATAACTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCCTTGAGCGAAACTGCGGCCTGA] [-] EMBL CD063751 [TATGTAGTCTATCTGGTGGAGTAAATCCAGCCGTATGGGAAGATATAACTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTT ] [+] EMBL CD186019 [ CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGGGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCG ] [-] EMBL CD187635 [ CGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCTTCATGCTCAAGATATGAAGAAAAGTATTTCACGCATCAGAAAGTTTTCAACGGAATTTGCTCAAATTAGATGCATCTGCGTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGTTGAACTTTACCATTCGACCATTCCATGAGAATAGAATTACATT ] [-] EMBL CD059182 [ TAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCCTTGAGCGAAACTGCGGCCTGA] consensusID : consensus_9328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 420 fasta sequence [ATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGNAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCGGCAGTCGAA] [+] EMBL CD072042 [ATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGNAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCGGCAGTCGAA] [+] EMBL CD059247 [ TCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGA ] [+] EMBL CD059197 [ TCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGATTGCGAGA ] [-] EMBL CD059287 [ CTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGAC ] consensusID : consensus_9328#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 128 fasta sequence [TTCACACCATAGCCGCCGCCACAGTCACCACAGTACAGCCTCCACCATATCACTATCGCCATAACCGCTACCAACAACCTGCTTCGGCTCTTGCACTTTATGAATCTGTATGCCATATGCCGGCCGTG] [+] EMBL CD167688 [TTCACACCATAGCCGCCGCCACAGTCACCACAGTACAGCCTCCACCATATCACTATCGCCATAACCGCTACCAACAACCTGCTTCGGCTCTTGCACTTTATGAATCTGTATGCCATATGCCGGCCGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9328#0 TATGTAGTCTATCTGGTGGAGTAAATCCAGCCGTATGGGAAGATATAACTGGTTCAACAC 60 consensus_9328#1 ------------------------------------------------------------ consensus_9328#2 ------------------------------------------------------------ consensus_9328#0 CTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGT 120 consensus_9328#1 ------------------------------------------------------------ consensus_9328#2 ------------------------------------------------------------ consensus_9328#0 TGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAA 180 consensus_9328#1 ------------------------------------------------------------ consensus_9328#2 ------------------------------------------------------------ consensus_9328#0 GCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGG 240 consensus_9328#1 --ATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGG 58 consensus_9328#2 ------------------------------------------------------------ consensus_9328#0 ATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAG 300 consensus_9328#1 ATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAG 118 consensus_9328#2 --------TTCACACCATAGCCGCCGCCACAGTCACCACAGTA-CAGCCTC-----CACC 46 ** ** * * *** * * ** * * * * **** ** consensus_9328#0 ATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAA-TTTGCTCAAATTAGA 359 consensus_9328#1 ATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGNAATTTGCTCAAATTAGA 178 consensus_9328#2 ATATCACTATCGCCATAACCGCTACCAACAACCTGCT--TCGGCTCTTGC----ACTTTA 100 **** * * ** * * *** ** * ** **** * * * consensus_9328#0 TGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGT 419 consensus_9328#1 TGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGT 238 consensus_9328#2 TGAATCTGTATGCCATATGCCGGCCGTG-------------------------------- 128 ** ***** ** ** * * * * ** consensus_9328#0 CAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATG 479 consensus_9328#1 CAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATG 298 consensus_9328#2 ------------------------------------------------------------ consensus_9328#0 GTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCA 539 consensus_9328#1 GTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCA 358 consensus_9328#2 ------------------------------------------------------------ consensus_9328#0 TTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCCTTGAGCG 599 consensus_9328#1 TTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCGGCAGTCG 418 consensus_9328#2 ------------------------------------------------------------ consensus_9328#0 AAACTGCGGCCTGA 613 consensus_9328#1 AA------------ 420 consensus_9328#2 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||