cluster # 9330

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Schistosoma mansoni
cluster # 9330 cluster # 9330 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9330#0 length = 514 sequences # 5

consensus_9330#1 length = 512 sequences # 3
consensus_9330#2 length = 397 sequences # 1

consensusID : consensus_9330#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 514
fasta sequence

                              [AGAATCGGCACGAGGCCAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAAAAT]

[+] EMBL CD083355             [AGAATCGGCACGAGGCCAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAAAAT]
[-] EMBL CD144882             [                         TGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGC                                            ]
[-] EMBL CD072539             [                                                                                                          TGATGAATT AAAGTCTATCAGGCAGATCCCGATGNCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGA                                                                                             ]
[+] EMBL CD202667             [                                                                                                                                                        GCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCGATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCGCAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAAT                                                                                                                                    ]
[+] EMBL CD157723             [                                                                                                                                                                                        TATCAAGGATATCGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAA                                                               ]




>consensus_9330#0
AGAATCGGCACGAGGCCAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTG
GGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAG
TCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTC
AAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATG
TTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGA
TTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCT
TCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGG
AGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTA
TGCACGAACTAGACGATGAGGCGCAGGCTAAAAT

consensusID : consensus_9330#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 512
fasta sequence

                              [TTAGCCCGTTACGTCTAAAATGACTAACGTAAATATTCAATACGACAACGCGCTACTGGGTATTCTCCAAAACGAAGGGAAATTAGAGAATTTTTTAGACGTGATATTCGGGTTTTTAATGCGCAGGACGGACTTTTTCTATATTATGACACCAGAACAAAAAAAAATAGGTTTCCCACCTGGTGTGAGCATCGAAATGATTCTTAAGGCTTACGAGAAATATAAGACNATATNTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCAACCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAA]

[+] EMBL CD078150             [TTAGCCCGTTACGTCTAAAATGACTAACGTAAATATTCAATACGACAACGCGCTACTGGGTATTCTCCAAAACGAAGGGAAATTAGAGAATTTTTTAGACGTGATATTCGGGTTTTTAATGCGCAGGACGGACTTTTTCTATATTATGACACCAGAACAAAAAAAAATAGGTTTCCCACCTGGTGTGAGCATCGAAATGATTCTTAAGGCTTACGAGAAATATAAGACNATATNTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCAACCAAT                                                                                                                                                                                                                                             ]
[-] EMBL SM1247310            [                                                                                                                                                                                                CGAAATGATTCTTATGGCTTACGAGAAATATAAGACAATATTTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCAACCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGATATTAAAA]
[-] EMBL CD133556             [                                                                                                                                                                                                                                               GTTCCCAGCGTCATCGTCAGGTAGACACCACCCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGATACACATGGAGTCAAACTATCAAGGATATTGATATTAAA ]




>consensus_9330#1
TTAGCCCGTTACGTCTAAAATGACTAACGTAAATATTCAATACGACAACGCGCTACTGGG
TATTCTCCAAAACGAAGGGAAATTAGAGAATTTTTTAGACGTGATATTCGGGTTTTTAAT
GCGCAGGACGGACTTTTTCTATATTATGACACCAGAACAAAAAAAAATAGGTTTCCCACC
TGGTGTGAGCATCGAAATGATTCTTAAGGCTTACGAGAAATATAAGACNATATNTGAGGG
TTACCAGCGTCATCGTCAGGTAGACACCAACCAATCAGTCAAAATTGTAGAATCAGTCAT
CAAAGAAGAACCAAAGCAGCCAAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGT
ATCTGGGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATT
AAAAGTCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATG
GAGTCAAACTATCAAGGATATTGATATTAAAA

consensusID : consensus_9330#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 397
fasta sequence

                              [AATCTTTACGCGCAAACAATAAACGGTCTTAGTTTTCGTCCTTTCGACTTCATATTATTTAGCTTCATTTAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATGTTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAGAATCCAACAGTTAATGTATGATGAAC]

[+] EMBL CD188891             [AATCTTTACGCGCAAACAATAAACGGTCTTAGTTTTCGTCCTTTCGACTTCATATTATTTAGCTTCATTTAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATGTTGAACGCAAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGATCTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAAATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAGGCGCAGGCTAGAATCCAACAGTTAATGTATGATGAAC]




>consensus_9330#2
AATCTTTACGCGCAAACAATAAACGGTCTTAGTTTTCGTCCTTTCGACTTCATATTATTT
AGCTTCATTTAGATACCAGAAAACGTGGATGCTCGCAATGTTTCTGTAAATGTTGAACGC
AAACATATTCATGTTTCGGTTCAAAAAGACAAGAAAGAGATTTTTTGTTTCGATGGAGAT
CTGTGTTGGGAGATTCACAAGAATGATGCTATCTGGACCTTCCACTCTAAAGAAAATCAA
ATTCAGCTGTGTCTTGACAAGATTCAGGAACGGTGGTGGGAGGCAGCTTTTGATGGAGAA
GACAAACTAAACACTCGGAAAATTGATTGCTCTCGGCCTATGCACGAACTAGACGATGAG
GCGCAGGCTAGAATCCAACAGTTAATGTATGATGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9330#0      AGAATCGGCACGAGGCCAATATCACTGTCTTACCTTCAAACGAGGATAAAAATGTATCTG 60
consensus_9330#2      ------------------------------------------------------------
consensus_9330#1      ---------------------------TTAGCCCGTTACGTCTAAAATGACTAACGTAAA 33
                                                                                  

consensus_9330#0      GGTGTCCATCAAGCGTTAAAAACTTAACATCCAAAAGTGAAGAGAATGATGAATTAAAAG 120
consensus_9330#2      ------------------------------------------------------------
consensus_9330#1      TATTCAATACGACAACGCGCTACTGGGTATTCTCCAAAACGAAGGGAAATTAGAGAATTT 93
                                                                                  

consensus_9330#0      TCTATCAGGCAGATCCCGATTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTC 180
consensus_9330#2      -----------------AATCTTTACGCGCAAACAATAAACGGTCTTAGTTTTCGTCCTT 43
consensus_9330#1      TTTAGACGTGATATTCGGGTTTTTA-ATGCGCAGGACGGACTTTTTCTATATTATGACAC 152
                                         *   **          *       *                

consensus_9330#0      AAACTATCAAGGATATTGATATTAAAATTAAGATACCAGAAAACGTGGATGCTCGCAATG 240
consensus_9330#2      TCGACTTCATAT-TATTTAGCTTC--ATTTAGATACCAGAAAACGTGGATGCTCGCAATG 100
consensus_9330#1      CAGAACAAAAAA-AAATAGGTTTCCCACCT-GGTGTGAGCAT-CGAAATGATTCTTAAGG 209
                              *     * *    **   *    * *   ** *  **       **  ** *

consensus_9330#0      TTTCTGTAAATATTGAACGCAAACATATTCATGTTTCGGTTCAAAA--AGACAAGAAAGA 298
consensus_9330#2      TTTCTGTAAATGTTGAACGCAAACATATTCATGTTTCGGTTCAAAA--AGACAAGAAAGA 158
consensus_9330#1      CTTACGAGAAATATAAGACNATATNTGAGGGTTACCAGCGTCATCGTCAGGTAGACACCA 269
                       **  *  **   * *    * *  *     *     *  ***     **  *   *  *

consensus_9330#0      GATTTTTTGTTTCGATGG--AGATCTGTGTTGGGAGATTCACAAGAATGAT--GCTATCT 354
consensus_9330#2      GATTTTTTGTTTCGATGG--AGATCTGTGTTGGGAGATTCACAAGAATGAT--GCTATCT 214
consensus_9330#1      ACCAATCAGTCAAAATTGTAGAATCAGTCATCAAAGAAGAACCAAAGCAGCCAAATATCA 329
                           *  **    ** *    *** **  *   ***   ** * *         **** 

consensus_9330#0      GGACCTTCCACTCTAAAGAAAATCAAATT-CAGCTGTGTCTTGA-CAAGATTCAGGAACG 412
consensus_9330#2      GGACCTTCCACTCTAAAGAAAATCAAATT-CAGCTGTGTCTTGA-CAAGATTCAGGAACG 272
consensus_9330#1      CTGTCTTACCTTCAAACGAGGATAAAAATGTATCTGGGTGTCCATCAAGCGTTAAAAACT 389
                          *** *  ** ** **  ** *** *  * *** ** *  * ****  * *  *** 

consensus_9330#0      GTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTC 472
consensus_9330#2      GTGGTGGGAGGCAGCTTTTGATGGAGAAGACAAACTAAACACTCGGAAAATTGATTGCTC 332
consensus_9330#1      -TAACATCCAAAAG----TGAAGAGAATGATGAATTAAAAGTCTATCAGGCAGATCCCGA 444
                       *          **    *** *   * **  ** ****        *    ***  *  

consensus_9330#0      TCGGC-CTATGCACGAACTAGA--CGATGAGGCGCAGGCTAAAAT--------------- 514
consensus_9330#2      TCGGC-CTATGCACGAACTAGA--CGATGAGGCGCAGGCTAGAATCCAACAGTTAATGTA 389
consensus_9330#1      TTGCTACAACGGAGCCATTAGAGATAGTTACACATGGAGTCAAACTATCAAGGATATTGA 504
                      * *   * * * *   * ****     * *  *   *  *  **                

consensus_9330#0      --------
consensus_9330#2      TGATGAAC 397
consensus_9330#1      TATTAAAA 512