These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 394 fasta sequence [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTAG] [+] EMBL CD162362 [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCAGCGTCATCGGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTA ] [+] EMBL CD123735 [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCG ] [+] EMBL CD092225 [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTA ] [+] EMBL CD092151 [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATCGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCGCGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTGTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTA ] [+] EMBL CD180254 [GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCa ] [-] EMBL CD162371 [ GTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTTATCTATAGCCATATTATTCAGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTAG] [-] EMBL CD092234 [ GTGTTAATGTCTAACTTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTGAGGTGGATACCCGTCTCTACCTGACATGGA TAGATCCACTGGTCACGGACCCTCATTAGAACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATGGGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGGGTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCGTGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACCAGTTTCTCACATACTCCAACGACTAAACTTTTAG] consensusID : consensus_9335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [GGTGTAGGAAGGATTCAAATGTGACCAACTTGGTCTCGTGTGTTGTTACGGGTATGAGGGCTGATATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTAAGGAACCTGAAGAGTAAGTTACATTAATGTTGGTCTTAAAGACGTGGGAGTGTGACCGCACAGCCCAACGGACAATTGCTTGAGGCCGGTCACGCACGGTCTTTTTGTGGGAAGATTCTAACGTGCTAGTTCCA] [+] EMBL CD152700 [GGTGTAGGAAGGATTCAAATGTGACCAACTTGGTCTCGTGTGTTGTTACGGGTATGAGGGCTGATATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTAAGGAACCTGAAGAGTAAGTTACATTAATGTTGGTCTTAAAGACGTGGGAGTGTGACCGCACAGCCCAACGGACAATTGCTTGAGGCCGGTCACGCACGGTCTTTTTGTGGGAAGATTCTAACGTGCTAGTTCCA] consensusID : consensus_9335#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [ACCACCTGATACACCGATTTCGGGCCCAGCGGCGGACACATCAACATCGGGAACCTCCATGGAGACATCGAGTTCGGGTTTCGGAAGAGATACATCCACACCATCAGCACCTCCAAATCGAGCTTACCGGAANAAATCACCTCCCCAA] [+] EMBL CD128772 [ACCACCTGATACACCGATTTCGGGCCCAGCGGCGGACACATCAACATCGGGAACCTCCATGGAGACATCGAGTTCGGGTTTCGGAAGAGATACATCCACACCATCAGCACCTCCAAATCGAGCTTACCGGAANAAATCACCTCCCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9335#0 GGTGTTAATGTCTAACCTCAATCAATCAACGAAATTGCGCAACCATCTTCCATTGTACTG 60 consensus_9335#1 ------------------------------------------------------------ consensus_9335#2 ------------------------------------------------------------ consensus_9335#0 AGGTGGATACCCGTCTCTACCTGACATGGATTAGATCCACTGGTCACGGACCCTCATTAG 120 consensus_9335#1 ------------------------------------------------------------ consensus_9335#2 -----------------------------------------------------------A 1 consensus_9335#0 AACTCCGAGAATTCTCTCACGAATCTAGTCACTAGTGAACACATGTTAATTATCAGTATG 180 consensus_9335#1 ----------GGTGTAGGAAGGATTCAAATGTGACCAACTTGGTCTCGTGTGTTGTTACG 50 consensus_9335#2 CCACCTGATACACCGATTTCGGGCCCAGCGGCGGACACATCAACATCGGGAACCTCCATG 61 * * * * * consensus_9335#0 GGGTTGTGGAGATAATGAGTTAATGCAGAGTTTACTATAATATGGACCTAAAGTCAGTGG 240 consensus_9335#1 GGTATG-AGGGCTGATA--TCACTTCCCGGCTGCCCACACCGTGGA----AGGGTATTTC 103 consensus_9335#2 GAGACATCGAGTTCGGGTTTCGGAAGAGATACATCCACACCATCAG--------CACCTC 113 * * * * * * * * * * consensus_9335#0 GTACAAAAACTTGACTAGAATAATGACATGATGTATTGTTATTGTAAACGTGTATGCTCG 300 consensus_9335#1 TTA-AGGAACCTGAAGAGTA-AGTTACATTA-ATGTTGGTCTTAAAGACGTGGGAGTGTG 160 consensus_9335#2 CAAATCGAGCTTACCGGAANAAATCACCTCCCCAA------------------------- 148 * * * * * * ** * consensus_9335#0 TGCTTTTTAATATTGCTAAAGTTTCATCTATAGCCATATTATTCGGCGTCATCAGCAACC 360 consensus_9335#1 -ACCGCACAGCCCAACGGACAATTGCTTGAGGCCGGTCACGCACGGTCTTTTT-GTGGGA 218 consensus_9335#2 ------------------------------------------------------------ consensus_9335#0 AGTTTCTCACATACTCCAACGACTAAACTTTTAG 394 consensus_9335#1 AGATTCTAACGTGCTAGTTCCA------------ 240 consensus_9335#2 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||