These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1049 fasta sequence [AGCTTCAATCAAAATTTATAAATAAAAAAAGGACTAACTGTTCTTTTAAAGAAATAATAAAGTTATTAATGAGTTGGAAAATGAATGATTGCTCTTCTTTTAAA-ACAACAACAACAAACAAACGAAGGATTCGAACGAAAGAAGTAAACAAGGATTATTACCTGACTAAATAATGATACGACTAGGATGAGAATATGAAAATGAAAGATAAAAAGGATAGGATAAAAATAACTTCTTTTATACATTGTCAAATAAATGAGAAAAAATAGATATATATATACTCCAAGAAGGAAGTTTCATTCTGAATAATAAGTAGTAGGTTTTGCATACATGAAAGTATTCGTTGTTAAAACATGTAAGGCCTATTTGTTTTATTGCACCGAGTTATATATATATATATATATATATATATATATATATATTTGAGGGGGGAGG-TAGGGAAGCTAAATTTAAACTACAGATTATAACAAAGGATTCATTAATAATCAATTCTAATTGGTATCCTAATATCTTCATCATCATCTTCATCTTCAAAATTAAAAGGTGTATAATTTATAGAAT-CATCGGTTAATAATGAACGTTTTGGACTATTATGAAATAATCCATCTGGTGTAT-CAATCATAT-CACGACGTGGTATATTTT-CAAATAATTCAGCACGATTTTGTTCTTCACCTTTTTTAACCCATTGACTATAAACATCATAGGCAAGTGTATCAATAATTTTACGTAATTTCTTATTTGAATATGGATCCATAGATAATTGATTGATATTTAAATAGGCAGCGTTCATTTTTAAACGTCGTAGATAAAATATAAAACTGACAGCCAACATACCAGTCTTAAATTTCTGTCTAGCATTGAAGACTGTCTTGCCAACTATGGGTTGTTGTAGGAAGAATACATGACTCAATGAATCCAAAGCTGTCAACCTTACTTTGGAATCCACAACTAGAATTTTACATATTAGATCCTTTGCAGATTCACTGATATCATCCCATTCTGGACTAGGAAAAGAGAAACGGCCTTCCATAATCTGACGCAGCATCAAA] [+] EMBL CD090498 [AGCTTCAATCAAAATTTATAAATAAAAAAAGGACTAACTGTTCTTTTAAAGAAATAATAAAGTTATTAATGAGTTGGAAAATGAATGATTGCTCTTCTTTTAAA ACAACAACAACAAACAAACGAAGGATTCGAACGAAAGAAGTAAACAAGGATTATTACCTGACTAAATAATGATACGACTAGGATGAGAATATGAAAATTGAAGAT ] [+] EMBL AI977026 [ AATCAAAATTTATAAATAAAAAAAGGACTAACTGTTCTTTTAAAGAAATAATAAAGTTATTAATGAGTTGGAAAATGAATGATTGCTCTTTTTTTAAA ACAACAACAACAAACAAACGAAGGATTCGAACGAAAGAAGTAAACAAGGATTATTACCTGACTAAATAATGATACGACTAGGATGAGAATATGAAAATGAAAGATAAAAAGGATAGGATAAAAATAACTTCTTTTATACATTGTCAAATAAATGAGAAAAAATAGATATATATATACTCCAAGAAGGAAGTTTCATTCTGAATAATAAGTAGTAGGTTTTGCATACATGAAAGTATTCGTTGTTAAAACATGTAAGGCCTATTTGTTTTATTGCACCGAGCTATATATATATATATATATATATATATATAT ] [+] EMBL CD076430 [ AATCAAAATTTATAAATAAAAAAAGGACTAACTGTTCTTTTAAAGAAATAATAAAGTTATTAATGAGTTGGAAAATGAATGATTGCTCTTTTTTTAAA ACAACAACAACAAACAAACGAAGGATTCGAACGAAAAAAGTAAACAAGGATTATTACCTGACTAAATAATGATCCCACTAGGATGAAAATATGAAAATGAAAGATAAAAAGGATAGGATAAAAATAACTTTTTTTATACATTGGCAAATAAATGAAAAAAAATAGATTTTTTTTTCCTCCAAGAAGGAAGTTTCATTCTGAATAATAAGTAGTAGGTTTTGCATACATGAAAGTATTCGTTGTTAAAACATGTAAGGCCTATTTGTTTTATTGCACCGAGT TATATATATATATATATATATATATATATATATTTGAGGGGGGAGGNTAGGGAA ] [+] EMBL CD073865 [ ATAAAGTTATTTATGAGTTGGAAAATGACTGATTGCTCTTCTTTTAAA ACAACAACAACAAACAAACGAAGGATTCGAACGAAAGAAGTAAACAAGGATTATTACCTGACTAAATAATGATACGACTAGGATGAGAATATGAAAATGAAAGATAAAAAGGATAGGATAAAAATAACTTCTTTTATACATTGTCAAATAAATGAGAAAAAATAGATATATATATACTCCAAGAAGGAAGTTTCATTCTGAATAATAAGTAGTAGGTTTTGCATACATGAAAGTATTCGTTGTTAAAACATGTAAGGCCTATTTGTTTTATTGCACCGAGTTATATATATATATATATATATATATATATATATATATTTGAGGGGGGAGG TAGGGAAGCTAAATTTAAACTACAGATTATAACAAAGGATTCATTAATAATCAATTCTAATTGGTATCCTAATATCTTCATCATCATCTTCATCTTCAAAATTAAAAGGTGTATAATTTATAGAAT CATCGGTTAATAATGAACGTTTTGGACTATTATGAAATAATCCATCTGGTGTAT CAATCATAT CACGACGTGGTATATTTT CAAATAATTCAGCACGATTTTGTTCTTCACCTTTTTTAACCCATTGACTATAAACATCATAGGGCAGTGT ] [+] EMBL CD167419 [ TGCTCTTCTTTGAAAGACAACAACAACAAACAAACGAAGGATTCGAACGAAAGAAGTAAACAAGGATTATTACCTGACTAAATAATGATACGACTAGGATGAGAA ] [-] EMBL CD082844 [ ATATATATATATATATATATATATATA TTGAGGGGGNAGG TAGGGAAGCTAAATTTAAACTACAGATTATAACAAAGGATTCATTAATAATCAATTCTAATTGGTATCCTAATATCTTCATCATCATCTTCATCTTCAAAATTAAAAGGTGTATAATTTATAGAAT CATCGGTTAATAATGAACGTTTTGGACTATTATGAAATAATCCATCTGGTGTAT CAATCATAT CACGACGTGGTATATTTT CAAATAATTCAGCACGATTTTGTTCTTCACCTTTTTTAACCCATTGACTATAAACATCATAGGCAAGTGTATCAATAATTTTACGTAATTTCTTATTTGAATATGGATCCATAGATAATTGATTGATATTTAAATAGGCAGCGTTCATTTTTAAACGTCGTAGATAAAATATAAAACTGACAGCCAACATACCAGTCTTAAATTTCTGTCTAGCATTGAAGACTGTCTTGCCAACTATGGGTTGTTGTAGGAAGAATACATGACTCAATGAATCCAAAGCTGTCAACCTTACTTTGGAATCCACAACTAGAATTTTACATATTAGATCCTTTGCAGATTCACTGATATCATCCCATTCTGGACTAGGAAAAGAGAAACGGCCTTCCATAATCTGACGCAGCATCAAA] [+] EMBL CD201011 [ TTAAACTACAGATTATAGCAAAGGATTCATTAATAATCAATTCTAATTGGTATCCTAATATCTTCATCATCATCTTCATCTTCAAAATTAAAAGGTGTATAATTTATAGAAT CATCGGTTAATAATGAACGTTTCTGACTATTATGAAATAATCCATCTGGTGTAT CAATCATAT CACGACGTGGTATATTTT CAAATAATTCAGCACGATTTTGTTCTTCACCTTTTTTAACCCATTGACTATAAACATCATAGGCAAGTGTATCAATAATTTTACGTAATTTCTTATTTGAATATGGATCCATAGATAATTGATTGATATTTAAATAGGCAGCGTTCATTTTTAAACGTCGTAGATAAAGTATAAAACTGACAGCCAACATACCAGTCTTAAATTTCTGTCTAGCATTGAAGACTGTCTTGCCAACTATGGGTTGTTGTAGGAAG ATACATGACTCAATGAATCCAAA ] [-] EMBL CD195132 [ GATTATAACAAAGGATTCATTAATAATCAATTNTAATTGGTATCCTAATATCTTCATCATCATCTTCATCTTCANAATTAAAAGGTGTATAATTTATAGAAT CATCGGTTAATAATGAACGTTTTGGACTATTATGAAATAATCCATCTGGTGTAT CAATCATAT CACGACGTGGTATATTTT CAAATAATTCAGCACGATTTTGTTCTTCACCTTTTTTAACCCATTGACTATAAACATCATAGGCAAGTGTATCAATAATTTTACGTAATTTCTTATTTGAGTATGGATCCATAGATAATTGATTGATATTTAAATAGGCAGCGTTCATTTTTAAACGTCGTAGATAAAATATAAAACTGACAGCCAACATACCAGTCTTAAATTTCTGTCTAGCATTGAAGACTGTCTTGCCAACTATGGGTTGTTGTAGGAAGAATACATGACTCAATGAATCCAAAGCT ] [-] EMBL SM703 [ GAATCCATCGGTTAATAATGGACGTTTTGGACTATTATGAAATAATCCATCTGNTGTATCCAATCATATCCCCGACGTGGNATATTTTCCANATAATTCAGCNCGATTTTGTTCTTCACCTTTTTTAACCCATTGACTATAAACATCATAGGCAAGTGTATCAATAATTTTACGTAATTTCTTATTTGAATATGGATCCATAGATAATTGATTGATATTTAAATAGGCAGCGTTCATTTTTAAACGTCGTAGATAAAATATAAAACTGACAGCCNACATACCAGTCTTAAATTTCTGTCTAGCATTGAAGACTGTCTTGCCAACTATGGGTTGTTGTAGGAAGAATACATGACTCAATGAATCCAAANCTGTCAACCTTACTTTGGAATCCAC ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||