These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9346#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 645 fasta sequence [ACCTGCGACTTAGTGGCTGAAAACCAAAAAGCTTGACTGCTCAATTGTTCTTTTTCATTGGATTAAGAAATGTCAGTATCTCACATACTTTAAATTAATCTGTTCGGTGTTTTTTGTTTATCACATTGTTATCCTATAGAAAAATCTCCAATTATCGACAAGTCCATTGTATCTCATCCAATTCGTGATTGTATTCTATGGGGTACCGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTA-TTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTTCGTTTATACAGTGTCATGTGAAATGATGATGTGGTCTCTGAACTATAGGAGTAGACTCTAAAGATGGTGCCCAC] [+] EMBL CD082816 [ACCTGCGACTTAGTGGCTGAAAACCAAAAAGCTTGACTGCTCAATTGTTCTTTTTCATTGGATTAAGAAATGTCAGTATCTCACATACTTTAAATTAATCTGTTCGGTGTTTTTTGTTTATCACATTGTTATCCTATAGAAAAATCTCCAATTATCGACAAGTCCATTGTATCTCATCCAATTCGTGATTGTATTCTATGGGGTACCGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTA TTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTTCGTTTATACAGTGTCATGTGAAATGATGATGTGGTCT ] [+] EMBL CD164491 [ CCGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTAGTTTACGATCATTACTGTTATTGATTGTTTTATAGTCTTTAAATAGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTTCGTTTATACAGTGTCATGTGAAATGATGATGTGGTCTCTGAACTATAGGAGTAGAC ] [+] EMBL CD164399 [ CCGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTA TTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTTCGTTTATACAGTGTCATGTGAAATGATGATGTGGTCTCTGAACTATAGGAGTAGAC ] [-] EMBL CD164503 [ CGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTA TTTACGATCATTACTGTTATTGATTGTTTTATAATCCTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTTCGTTTATACAGTGTCATGTGAAATGATGATGTGGTCTCTGAACTATAGGAGTAGACTCTAAAGATGGTGCCCAC] [-] EMBL CD164442 [ CGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTA TTTACGATCATTACTGTTATTGATTGTTTTATAATCCTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTTCGTTTATACAGTGTCATGTGAAATGATGATGTGGTCTCTGAACTATAGGAGTAGACT ] consensusID : consensus_9346#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 512 fasta sequence [GACAATGTCCTAATCTAATTAGATTTTTTAAAAATATCACATTAAAATACTTTCATAAATATACAAAATGTTTTTAGAAAAGAAAAATCTCCAATTATCGACAAGTCCATTGTATCTCATCCAATTCGTGATTGTATTCTATGGGGTACCGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTATTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAA-GTTCTCCTTGNTGTCGT-AATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTT] [+] EMBL CD084227 [GACAATGTCCTAATCTAATTAGATTTTTTAAAAATATCACATTAAAATACTTTCATAAATATACAAAATGTTTTTAGAAAAGAAAAATCTCCAATTATCGACAAGTCCATTGTATCTCATCCAATTCGTGATTGTATTCTATGGGGTACCGGTGTAGTTGGTTTATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTATTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCTTTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATTGCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATTCTCCTTGTTATTGTATTATCACAAAGAAGTT] [+] EMBL CD070571 [ ATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTATTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTT CCTATCTCTTCAAAA GGTCTCCTTGNTGTCGT AATCTCTTT ] [+] EMBL CD070552 [ ATTTTTAACTTATGCTTATTATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTATTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGCATTTCTCCTTCTCTTTTTTCCTATCTC TCAAAA GTTCTCCTTG TGTCGT AATCTCT ] consensusID : consensus_9346#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [AACCGGGGGGTAAGACACACACACACACAATCTGTGTAATTTNACACTTTTCCGATTGCACATGTGAATAGAACTATTTCCAGTTTCATTTTTAATCCCCANGTCATCTAGGCTATTCTCCNTGTTANTGTATTATCACAAAGAAGTTCGTTTANACAG] [-] EMBL CD164464 [AACCGGGGGGTAAGACACACACACACACAATCTGTGTAATTTNACACTTTTCCGATTGCACATGTGAATAGAACTATTTCCAGTTTCATTTTTAATCCCCANGTCATCTAGGCTATTCTCCNTGTTANTGTATTATCACAAAGAAGTTCGTTTANACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9346#0 ACCTGCGACTTAGTGGCTGAAAACCAAAAAGCTTGACTGCTCAATTGTTCTTTTTCATTG 60 consensus_9346#2 ------------------------------------------------------------ consensus_9346#1 -----------------------------------------------------GACAATG 7 consensus_9346#0 GATTAAGAAATGTCAGTATCTCACATACTTTAAATTAATCTGTTCGGTGTTTTTTGTTTA 120 consensus_9346#2 ------------------------------------------------------------ consensus_9346#1 TCCTAATCTAATTAGATTTTTTAAAAATATCACATTAAAATACTT----TCATAAATATA 63 consensus_9346#0 TCACATTGTTATCCTATAGAAAAATCTCCAATTATCGACAAGTCCATTGTATCTCATCCA 180 consensus_9346#2 ------------------------------------------------------------ consensus_9346#1 CAAAATGTTTTTAGAAAAGAAAAATCTCCAATTATCGACAAGTCCATTGTATCTCATCCA 123 consensus_9346#0 ATTCGTGATTGTATTCTATGGGGTACCGGTGTAGTTGGTTTATTTTTAACTTATGCTTAT 240 consensus_9346#2 ------------------------------------------------------------ consensus_9346#1 ATTCGTGATTGTATTCTATGGGGTACCGGTGTAGTTGGTTTATTTTTAACTTATGCTTAT 183 consensus_9346#0 TATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTA 300 consensus_9346#2 ------------------------------------------------------------ consensus_9346#1 TATTCAAATAATATAAGGATATTACAAAGGTTTCATAGATCTCGATCTACTTAAGTGGTA 243 consensus_9346#0 TTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGC 360 consensus_9346#2 ------------------------------------------------------------ consensus_9346#1 TTTACGATCATTACTGTTATTGATTGTTTTATAATCTTTGAATTGTCTATGTTTTGTTGC 303 consensus_9346#0 ATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAATGTTCTCCTTGTTGTCGTAAATCTCT 420 consensus_9346#2 ------------------------------------------------------------ consensus_9346#1 ATTTCTCCTTCTCTTTTTCCCTATCTCTTCAAAA-GTTCTCCTTGNTGTCGTAA-TCTCT 361 consensus_9346#0 TTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATT 480 consensus_9346#2 ---AACCGGGGGGTAAGACACACACACACACAATCTGTGTAATTTNACACTTTTCCGATT 57 consensus_9346#1 TTGAACCTGTTATTAATACACACACACACACAATCTGTGTAATTTTACACTTTTCCGATT 421 **** * *** **************************** ************** consensus_9346#0 GCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATT 540 consensus_9346#2 GCACATGTGAATAGAACTATTTCCAGTTTCATTTTTAATCCCCANGTCATCTAGGCTATT 117 consensus_9346#1 GCACATGTGAATAGTACTATTTCCAGTTTCATTTTTAATCCCCATGTCATCTTGGCTATT 481 ************** ***************************** ******* ******* consensus_9346#0 CTCCTTGTTATTGTATTATCACAAAGAAGTTCGTTTATACAGTGTCATGTGAAATGATGA 600 consensus_9346#2 CTCCNTGTTANTGTATTATCACAAAGAAGTTCGTTTANACAG------------------ 159 consensus_9346#1 CTCCTTGTTATTGTATTATCACAAAGAAGTT----------------------------- 512 **** ***** ******************** consensus_9346#0 TGTGGTCTCTGAACTATAGGAGTAGACTCTAAAGATGGTGCCCAC 645 consensus_9346#2 --------------------------------------------- consensus_9346#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||