cluster # 9348

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Schistosoma mansoni
cluster # 9348 cluster # 9348 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9348#0 length = 857 sequences # 8

consensus_9348#1 length = 324 sequences # 1

consensusID : consensus_9348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 857
fasta sequence

                              [ATTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTAGAAACAAACCTAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCGTATTTTATGAAAAATCACTTGGGGACATACGAATGTAAATTGTGCCTTACTTTGCACAATAATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAGACGGGCTGTTGAGCAGGCCCGTGAGGCTCCATCTACAATGCAACCAGAACGCGTTAAAGTAGAGCCAAAGAAATTCATTAAAATTGGTCGTCCTGGATATAAAGTAACCAAACAAAAGGATCCAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTTCCGGTGTAATACCTCGACATCGGTTTATGTCTGCTTATGAACAACATGTTGAACCACCAGATAAACGATGGCAATACTTATTGTTCGCTGCTGAACCTTATGAAACGATTGCTTTTAAAATTCCTAGCCGTGAAGTAGATAAAGACCCC-AAAAAGCTGTGGACTTACTGGAATTCCAGCTCTAAACAATTCTTCCTACAGTTCGCTTTCAAACTAGAAAGTCAGTCATCTTCTACAGCTATGCTTCGTGATTTAGAAATGCAAAAAGCTAAAGCTCAGCATGCCCAACTTCAGCTCCAATTACCTCCACCGCCACAC]

[+] EMBL AI975112             [ATTGGCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTAGAAACAAACCTAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCGTATTTTATGAAAAATCACTTGGGGACATACGAATGTAAATTGTGCCTTACTTTGCACAATAATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAGACGGGCTGTTGAGCAGGCCCGTGAGGCTCCATCTACAATGCAACCAGAACGCGTTAAAGTAGAGCCAAAGAAATTCATTAAAATTGGTCGTCCTGGATATAAAGTAACCAAACAAAAGGATCCAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGA                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AI975055             [ATTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTAGAAACAAACCTAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCGTATTTTATGAAAAATCACTTGGGGACATACGAATGTAAATTGTGCCTTACTTTGCACAATAATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAGACGGGCTGTTGAGCAGGCCCGTGAGGCTCCATCTACAATGCAACCAGAACGCGTTAAAGTAGAGCCAAAGAAATTCATTAAAATTGGTCGTCCTGGATATAAAGTAACCAAACAAAAGGATCCAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTTNCGGTGTAATACCTCGACATCGGTTT                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AI976166             [ATTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTAGAAACAAACCTAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCGTATTTTATGAAAAATCACTTGGGGACATACGAATGTAAATTGTGCCTTACTTTGCACAATAATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAGACGGGCTGTTGAGCAGGCCCGTGAGGCTCCATCTACAATGCAACCAGAACGCGTTAAAGTAGAGCCAAAGAAATTCATTAAAATTGGTCGTCCTGGATATAAAGTAACCAAACAAAAGGATCCAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTTn                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD169636             [                                                                              ACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCGTATTTTATGAAAAATCACTTGGGGACATACGAATGTAAATTGTGCCTTACTTTGCACAATAATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAGACGGGCTGTTGAGCAGGCCCGTGAGGCTCCATCTACAATGCAACCAGAACGCGTTAAAGTAGAGCCAAAGAAATTCATTAAAATTGGTCGTCCTGGATATAAAGTAACCAAACAAAAGGATCCAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTTCCGGTGTAATACCTCGACATCGGTTTATGTCTGCTTATGAACAACATGTTGAACCACCAGATAAACGATGGCAATACTTATTGTTCGCTGCTGAACCTTATGAAACGATTGCTTTTAAAATTCCTAGCCGTGAAGTAGATAAAGACCCC AAAAAGCTGTGGA                                                                                                                                                           ]
[+] EMBL CD163910             [                                                                                                                                                                                                                                                                CTTGGGGACATACGAATGTAAATTGAGCCTTACTTTGCACAATAATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD187009             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TAACCAAACAAAAGGATCCAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTTCCGGTGTAATACCTCGACATCGGTTTATGTCTGCTTATGAACAACATGTTGAACCACCAGATAAACGATGGCAATACTTATTGTTCGCTGCTGAACCTTATGAAACGATTGCTTTTAAAATTCCTAGCCGTGAAGTAGATAAAGACCCCAAAAAAGCTGTGGACTTACTGGAATTCCAGCTCTAAACAATTCTTCCTACAGTTCGCTTTCAAACTAGAAAGTCAGTCATCTTCTACAGCTATGCTTCGTGATTTAGAAATGCAAAA                                                    ]
[-] EMBL CD188704             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACCAAACAAAAGGATCCAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTTCCGGTGTAATACCTCGACATCGGTTTATGTCTGCTTATGAACAACATGTTGAACCACCAGATAAACGATGGCAATACTTATTGTTCGCTGCTGAACCTTATGAAACGATTGCTTTTAAAATTCCTAGCCGTGAAGTAAATAAAGACCCC AAAAAGCTGTGGACTTACTGGAATTCCAGCTCTAAACAATTCTTCCTACAGTTCGCTTTCAAACTAGAAAGTCAGTCATCTTCTACAGCTATGCTTCGTGATTTAGAAATGCAAAAAGCTAAAGCTCAGCATGCCCAACTTCAGCTCCAATTACCTCCACCGCCACAC]
[-] EMBL CD183278             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACCAGACAAAAGGATCCAGATGCTAATCGACAGTCAATGCTTTTCCATATTGATGATCCAGAAATAGCTGATGCTTCCGGTGTAATACCTCCACATCGGTTAATGTCTGCTTATGAACAACATGTTGAACCACCAGATAAACGATGGCAATACTTATTGTTCGCTGCTGAACCTTATGAAACGATTGCTTTTAAAATTCCTAGCCGTGAAGTAGATAAAGACCCC AAAAAGCTGTGGACTTACTGTAATTCCAGCTCTAAACAATTCTTCGTGCAGATCGCTTTCAAACTAGAAAGTCAGTCATCTTCTACAGCTATGCTTCGTGATTTAGAAATGCAAAAAGCTAAAGCTCAGCATGCCCAACTTCAGCTCCAATTACCTCCTCCca     ]




>consensus_9348#0
ATTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTAGAAACAAACC
TAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAAC
ATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCG
ACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCGT
ATTTTATGAAAAATCACTTGGGGACATACGAATGTAAATTGTGCCTTACTTTGCACAATA
ATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAGAC
GGGCTGTTGAGCAGGCCCGTGAGGCTCCATCTACAATGCAACCAGAACGCGTTAAAGTAG
AGCCAAAGAAATTCATTAAAATTGGTCGTCCTGGATATAAAGTAACCAAACAAAAGGATC
CAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTT
CCGGTGTAATACCTCGACATCGGTTTATGTCTGCTTATGAACAACATGTTGAACCACCAG
ATAAACGATGGCAATACTTATTGTTCGCTGCTGAACCTTATGAAACGATTGCTTTTAAAA
TTCCTAGCCGTGAAGTAGATAAAGACCCCAAAAAGCTGTGGACTTACTGGAATTCCAGCT
CTAAACAATTCTTCCTACAGTTCGCTTTCAAACTAGAAAGTCAGTCATCTTCTACAGCTA
TGCTTCGTGATTTAGAAATGCAAAAAGCTAAAGCTCAGCATGCCCAACTTCAGCTCCAAT
TACCTCCACCGCCACAC

consensusID : consensus_9348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [TTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTGGAAACAAACCTAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCAGAGCTTAGTATTTTTCATAATATATATTCGTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI395702             [TTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTGGAAACAAACCTAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCAGAGCTTAGTATTTTTCATAATATATATTCGTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9348#1
TTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTGGAAACAAACCT
AGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAACA
TCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCGA
CCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCAGA
GCTTAGTATTTTTCATAATATATATTCGTTTTTGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9348#0      ATTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTAGAAACAAACC 60
consensus_9348#1      -TTGTCAGATAATTTCACGCTTCCCCAACACACAAGGTACCTCCAGACTGGAAACAAACC 59
                       ************************************************ **********

consensus_9348#0      TAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAAC 120
consensus_9348#1      TAGGAAAGAGGGAACGTTACAGCTTGCGTAGACCCATCTAGTTGAAAATGGATTTCCAAC 119
                      ************************************************************

consensus_9348#0      ATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCG 180
consensus_9348#1      ATCGTGTTGGAGGGAAGACCGGCTCTGGTGGTGTAGCATCAGAAGCTGAAGCAAATCGCG 179
                      ************************************************************

consensus_9348#0      ACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCGT 240
consensus_9348#1      ACCGTAGGGAACGTTTGCGACAACTGGCACTTGACACGATTGATCTGAACAAAGACCCAG 239
                      **********************************************************  

consensus_9348#0      ATTTTATGAAAAATCACTTGGGGACATACGAATGTAAATTGTGCCTTACTTTGCACAATA 300
consensus_9348#1      AGCTTAGTATTTTTCAT-------------AATATATATT---CGTT--TTTGGAAAAAA 281
                      *  ***  *    ***              *** ** ***   * **  **** * ** *

consensus_9348#0      ATGAAGGGAGCTACCTCGCACACACTCAAGGAAAAAAGCATCAGTATAATTTGCAAAGAC 360
consensus_9348#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 324
                      *  **   *   *      * * *   **  ******  *  *                 

consensus_9348#0      GGGCTGTTGAGCAGGCCCGTGAGGCTCCATCTACAATGCAACCAGAACGCGTTAAAGTAG 420
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      AGCCAAAGAAATTCATTAAAATTGGTCGTCCTGGATATAAAGTAACCAAACAAAAGGATC 480
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      CAGATGCTAATCAACAGTCAATGCTTTTCCAAATTGATTATCCAGAAATAGCTGATGCTT 540
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      CCGGTGTAATACCTCGACATCGGTTTATGTCTGCTTATGAACAACATGTTGAACCACCAG 600
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      ATAAACGATGGCAATACTTATTGTTCGCTGCTGAACCTTATGAAACGATTGCTTTTAAAA 660
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      TTCCTAGCCGTGAAGTAGATAAAGACCCCAAAAAGCTGTGGACTTACTGGAATTCCAGCT 720
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      CTAAACAATTCTTCCTACAGTTCGCTTTCAAACTAGAAAGTCAGTCATCTTCTACAGCTA 780
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      TGCTTCGTGATTTAGAAATGCAAAAAGCTAAAGCTCAGCATGCCCAACTTCAGCTCCAAT 840
consensus_9348#1      ------------------------------------------------------------
                                                                                  

consensus_9348#0      TACCTCCACCGCCACAC 857
consensus_9348#1      -----------------