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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1060 fasta sequence
[TCGGTCTTATCGTCTAAATCACAGTTAATAACTGGATTACAGAGTCGTAATAGTGTAGCTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATCTACATCTAA-TTTACA-AACATTACA-GCGTTTAATCAAGGAAAAAGAAGCGCATATTGAGCAACTTTTACAGGAACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCTCGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAAC-AA-AGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGAGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGTCATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTAAGGAGTTGAATGATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAATGAGTC]
[+] EMBL CD068216 [TCGGTCTTATCGTCTAAATCACAGTTAATAACTGGATTACAGAGTCGTAATAGTGTAGCTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATCTACATCTAACTTTACACAACATTACACGCGTTTAATCA ]
[+] EMBL CD194880 [ GTAGCTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATCTACATCTAA TTTGCA AACATTACA GCGTTTAATCAAGGAAAAAGAAGCGCATATTGAGCAACTTTTACAGGAACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCTCGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAAC AA AGCGTTAGATGAAAATAATGAAAACAAATCACANATCCAGGGAANACCATCTCTTCAATTCACTGGACT ]
[+] EMBL CD169994 [ TGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATTGACAGGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCCCATGAAA ]
[+] EMBL CD121205 [ TCGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAACAAA AGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGTGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGTCATTTGTTGGCTGAGCGTTAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTAAGGAGTTGAATGATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAAT ]
[-] EMBL CD121754 [ CGTGAAACGAATGAACGTATGGAATTAGAATTAAATAAATTACGAATAGAATTAAATGATCTTTTACAAAAACAAAC AANAGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCCTCAATTCACTGGACTTGTATCTGAGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGTACGGTTACGTCATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTTAGGAGTTGAATGATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAATGAGTC]
[+] EMBL CD171056 [ ca AA AGCGTTAGATGAAAATAATGAAAACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGAGACATCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGTCATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACAATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAGAATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAATAATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAACAGGAAAAAATTGCTAGTGAAAAATTATCCAT ]
consensusID : consensus_9349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence
[AATATCCATGTTGAAGATCGCATAAGGAGTGAATGATTATTAGAAGCAGAGAGAACCAAATCAACCTCATCTTCTAATGAGTCCCAGATGACCAGTGGAGATTTAAAGAAACTAAAAGACCAACAAAATGCAACAATGGAAGGGTTAACTGATTATCAGAATGATGTTTTATCGGCTGTGGAATCCATTCATGCTGTACAAATAGAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTATCGAATGAAGAGACTATTCAGTTATTATTGGAAAAACTTAAATTACAAGAAGAACTATTCAATGAACAAAAAGATCAATTGGTTAATATTCAACGACAAACTATAACACTGAATCAAGATAAAGAGAATTCTGACAATAAACTTAATGAAATTGAAAATTATTTAGATAAGTTAAAAATACAGTTGAATGAATCTAGAATAAAACAAGAAGAAGTACTTACTGAATTAAACAGTGCCCATTTGAAACGTGATCAATTAGTTGAGGATATTTCTAAAGTTCTAGGTGATTTATCTATAACTGAAAATGAAGAGGATTTATCACCAATTTTATGTAAACGTATTAATGATTT]
[-] EMBL CD195861 [AATATCCATGTTGAAGATCGCATAAGGAGTGAATGATTATTAGAAGCAGAGAGAACCAAATCAACCTCATCTTCTAATGAGTCCCAGATGACCAGTGGAGATTTAAAGAAACTAAAAGACCAACAAAATGCAACAATGGAAGGGTTAACTGATTATCAGAATGATGTTTTATCGGCTGTGGAATCCATTCATGCTGTACAAATAGAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTATCGAATGAAGAGACTATT ]
[+] EMBL CD171407 [ ATGCTGTACAAATAGAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTATCGAATGAAGAGACTATTCAGTTATTATTGGAAAAACTTAAATTACAAGAAGAACTATTCAATGAACAAAAAGATCAATTGGTTAATATTCAACGACAAACTATAACACTGAATCAAGATAAAGAGAATTCTGACAATAAACTTAATGAAATTGAAAATTATTTAGATAAGTTAAAAATACAGTTGAATGAATCTAGAATAAAACAAGAAGAAGTACTTACTGAATTAAACAGTGCCCATTTGAAACGTGATCAATTAGTTGAGGATATTTCTAAAGTTCTAGGTGATTTATCTATAACTGAAAATGAAGAGGATTTATCACCAATTTTATGTAAACGTATTAATGATTT]
consensusID : consensus_9349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[CGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAGGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGA]
[+] EMBL CD190359 [CGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAGGAAAACATTGACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAAGAAGCTTTAATGTCAGCACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATGGCTCAAGCTGAAACATTGAATCAACGAGCTGTGATACAACAATTGAACCAACAATTAGAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAGCTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9349#0 TCGGTCTTATCGTCTAAATCAC-AGTTAATAACTGGATTACAGAGT-CGTAATAGTGTAG 58
consensus_9349#2 ----------CGCGATGAACATGAGCAAACAAC--GATTA-AGCTA-CATGA-AGAACGA 45
consensus_9349#1 ---------------------------AATATCCATGTTGAAGATCGCATAA-GGAGTGA 32
** * * ** ** * * * *
consensus_9349#0 CTGGTAACCGAAGGCCTATATCATCAATGAACACTTCAAATCGTCGAGAATC-TACATCT 117
consensus_9349#2 AAAAATCTTGAAGATTTACAATTTCGAATAGAAGAGGAAAACATTGACAAGAGCACAGTT 105
consensus_9349#1 ATGATTATTAGAAGCAGAGAGAACCAAATCA-ACCTCATCTTCTAATGAGTC--CCAGAT 89
* * * * * * * * * ** *
consensus_9349#0 AATTTACAAACATT-ACAGCGTTTAATCAAGGAAAAAGAAGCGCATATTGAGCAACTTTT 176
consensus_9349#2 GAATCACAGA-ATG-CAGACGATGAATC----GAAAATATTTGAACTGGAAGAAGCTTTA 159
consensus_9349#1 GACCAGTGGAGATTTAAAGAAACTAAAAGACCAACAAAATGCAACAATGGAAGGG--TTA 147
* * ** ** * ** * * **
consensus_9349#0 ACA--GGAACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATG 234
consensus_9349#2 ATGTCAGCACGTGAAATGGAACGTTCTGATTTAGCCAAAGTTACTTTAGAAAGAGAAATG 219
consensus_9349#1 ACT--GATTATCAGAATGATGTTTTATCGGCT-GTGGAATCCATTCATGCTGTACAAATA 204
* **** ** * * * ** * * * * ****
consensus_9349#0 GCTCAAGCTGAAACATTG-AATCAACGAGCTGTGATAC-AACAATTGAACCAACAAT-TA 291
consensus_9349#2 GCTCAAGCTGAAACATTG-AATCAACGAGCTGTGATAC-AACAATTGAACCAACAAT-TA 276
consensus_9349#1 GAAGAAGTGAATAATTTGCAATCAATTAACAAAATCACTAATAATGATATTAATACTGTA 264
* *** * * *** ****** * * ** ** *** * ** * * **
consensus_9349#0 GAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAG 351
consensus_9349#2 GAAAATATGGAAGCTGTTCTTCAACATTTACGCGATGAACATGAGCAAACAACGATTAAG 336
consensus_9349#1 TCGAATGAAGAGACTAT---TCAGTTATTATTGGAAAAACTTAAATTA-CAAGAA--GAA 318
*** ** ** * *** *** ** *** * * * *** * *
consensus_9349#0 CTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGAAAACATT 411
consensus_9349#2 CTACATGAAGAACGAAAAAATCTTGAAGATTTACAATTTCGAATAGAAGAAGA------- 389
consensus_9349#1 CTATTCAATGAACAAAAAGATC----AATTGGTTAATATTCAACGACAAACTATAACACT 374
*** * **** **** *** * * *** * ** * * *
consensus_9349#0 GACAAGAGCACAGTTGAATCACAGAATGCAGACGATGAATCGAAAATATTTGAACTGGAA 471
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 GA----ATCAAGATAAAG----AGAATTCTGACAATAAACTTAATGAAATTGAA------ 420
consensus_9349#0 GAAGCTTTAATGTCAGCTCGTGAAACGAATGAACGTATGGA-ATTAGAATTAAATAAATT 530
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 -AATTATTTAGATAAGTTAAAAATACAGTTGAATGAATCTAGAATAAAACAAGAAGAAGT 479
consensus_9349#0 ACGAATAGAATTAAATGATCTTTTACAAAAACAAACAAAGCGTTAGATGAAAATAATGAA 590
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 ACTTACTGAATTAAACAGTGCC---------CATTTGAAACGT--GATCAATTAGTTGAG 528
consensus_9349#0 AACAAATCACAAATCCAGGGAAAACCATCTCTTCAATTCACTGGACTTGTATCTGAGACA 650
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 GATATTTCTAAAGTTCTAGGTGATTTATCTA------TAACTGAAAATGAAGAGGATTTA 582
consensus_9349#0 TCTATTATTCCAACTGAAAACGAAGGCGAGTCTTTACAAAATGAATGTGAACGGTTACGT 710
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 TCACCAATTTTATGTAAACGTATTAATGATTT---------------------------- 614
consensus_9349#0 CATTTGTTGGCTGAGCGTCAGACTGAAGCAGAAATTATGCTAAAGCATCAAGCTGAAACA 770
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 ------------------------------------------------------------
consensus_9349#0 ATTGAGTCATTAACTGTTGAGTTTAATGGACAAGTTGAAAAACTAAATTGTCAGTTGCAG 830
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 ------------------------------------------------------------
consensus_9349#0 AATTCTTCAAATGAAATTCAGACCTTCAAAAACGAGAATAACCTACTGAAACAACAGAAT 890
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 ------------------------------------------------------------
consensus_9349#0 AATGAATTAGTCCTAGGTCTAAAGAGTCAAATTGATCAGTTAAATGAACAATTGGCAGAA 950
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 ------------------------------------------------------------
consensus_9349#0 CAGGAAAAAATTGCTAGTGAAAAATTATCCATGTTTGAAAATCGGATTAAGGAGTTGAAT 1010
consensus_9349#2 ------------------------------------------------------------
consensus_9349#1 ------------------------------------------------------------
consensus_9349#0 GATTTATTAGAAGCAGAGAAAACCAAATCAACCTCATCTTCTAATGAGTC 1060
consensus_9349#2 --------------------------------------------------
consensus_9349#1 --------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||