These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9350#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 955 fasta sequence [CAGGCCAANAATTCGGCACGAGGGCCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTCTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATCACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTTCTAAAAGTACATGTGTTT] [+] EMBL CD080765 [CAGGCCAANAATTCGGCACGAGGGCCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTCTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCG AAACATTTTTAANACTGGGTAGAAATCATATAACAATCACAGAATTACCAGGTCCTATA ] [-] EMBL CD074689 [ TCGNATGTAAAGGGTATTCTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATCACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTTCTAAAAGTACATGTGTTT] [-] EMBL CD077259 [ CGTNTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCACAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATCACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTTCTAAAAGTACATGTGTTT] [-] EMBL CD075819 [ TTGCTATAGTGAATATGAATAAAATGAACCATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTGAGAGGAATAATATCAATTAATCGTCCCCATGTAGGACGATTTGATCAGCAACAAGGACCCCAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATACCAATCCCAGAATTCCAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGATCAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACTTATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGCCTGTTAATATACCCAATAAACATTGCCCATTTGTTAGATTCTCGTTAGTTTTTAAATGTTTTAAAAGTACATGTGTTT] consensusID : consensus_9350#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 825 fasta sequence [AGCGTAAATATGTTAGTCCTTTCACGGTGGAACTAATTTTGGATATTGGAACGGTGGTGCAATGACCTGAATCATCAATTACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTGATATAACAAGAAAATATATGATTATAAGAGATCTACTTTTCCGGAGAAAAGGCGCTG-AACCACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTNTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTNTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATN] [+] EMBL CD126253 [AGCGTAAATATGTTAGTCCTTTCACGGTGGAACTAATTTTGGATATTGGAACGGTGGTGCAATGACCTGAATCATCAATTACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTGATATAACAAGAAAATATATGATTATAAGAGATCTACTTTTCCGGAGAAAAGGCGCTGTAACCACCGAAGTTGTCAACAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGAgct ] [+] EMBL CD082207 [ acgaggacGGAACTAATTTTGGATTTTGGAACGGTGGTGCTA GACCTGAATCATCAATCACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTGATATAACAAGAAAATATATGATAATAAGAGATCTACTTTTCCGGAGAAAAGGCACTG AACCACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTNTCTGTCAGAAAA ] [+] EMBL CD081978 [ G AACCACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTAAATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGGAAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCAATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAGATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAATTAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAATGGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAATATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTATCATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTNTGTGAGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATN] [+] EMBL CD083885 [ GCATGA TAAATAATATTACTATAATTGCTGAAAATGCCGGACATATTAATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTAC ] consensusID : consensus_9350#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [AGCACGCCTACATTTGGGGGAAAATGTCATAATTTTTACATCGGATGGTCCATCCAACGGTTTATTAAAATGTGGTTCGTCTGACAAACGCTATCTAGCAACAGTTAACTTTGGTCCTACAACTGCTCCTGTACCTAAGGTTTTCAAAGTATTGGAGGATTTCCGACAGAATCAACCCTGGGTAAATAGTGAATATTATGTTGGTTGGTTAGACGTGTGGGGCGGGGATCATCATAAAACTAATCCTGAATGGGCGGTGGATGGACTGAATCGCCTAATCAGCTACTCGATGAGAGTCAACGTAAATATGTATATGTTTCAGGGTGGAACTAATTTTGGATTTTGGAACGGTGGTGCAAGACCTGAAT] [+] EMBL AW017004 [AGCACGCCTACATTTGGGGGAAAATGTCATAATTTTTACATCGGATGGTCCATCCAACGGTTTATTAAAATGTGGTTCGTCTGACAAACGCTATCTAGCAACAGTTAACTTTGGTCCTACAACTGCTCCTGTACCTAAGGTTTTCAAAGTATTGGAGGATTTCCGACAGAATCAACCCTGGGTAAATAGTGAATATTATGTTGGTTGGTTAGACGTGTGGGGCGGGGATCATCATAAAACTAATCCTGAATGGGCGGTGGATGGACTGAATCGCCTAATCAGCTACTCGATGAGAGTCAACGTAAATATGTATATGTTTCAGGGTGGAACTAATTTTGGATTTTGGAACGGTGGTGCAAGACCTGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9350#0 ------------------------------------------------------------ consensus_9350#1 AGCGTAAATATGTTAGTCCTTTCACGGTGGAACTAATTTTGGATATTGGAACGGTGGTGC 60 consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 ------------------------------------------------------------ consensus_9350#1 AATGACCTGAATCATCAATTACGAGTTATGATTATGATGCTCCAATCAGTGAAGCTGGTG 120 consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 ------------------------------------------------------------ consensus_9350#1 ATATAACAAGAAAATATATGATTATAAGAGATCTACTTTTCCGGAGAAAAGGCGCTGAAC 180 consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 -------------------CAGGCCAANAATTCGGCACGA--GGGCCAATATGAAATTTA 39 consensus_9350#1 CACCGAAGTTGCCAAGAAATACTACAAAGATTTCGTATGGTTGTGTCAATATGAAATTTA 240 consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 AATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGG 99 consensus_9350#1 AATCTCATCTTCTAGAAAATAAAGCTCCTGTTACTCGTTCTGAGTTTCCTCTTATTATGG 300 consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 AAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCA 159 consensus_9350#1 AAAGTTTGCGACAGTATAACGGTTTTATGATTTATTCAGTCACTGTAACAGTCCCACGCA 360 consensus_9350#2 -----------------------------------------------------------A 1 * consensus_9350#0 ATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAG 219 consensus_9350#1 ATGGATCTATTTTTCTGAAGTTCTTTGGTATCTCAGACATAGCGCATGTTTATACTGGAG 420 consensus_9350#2 GCACGCCTACATTTGGGGGAAAATGTCATAATTTTTACAT--CGGATGGTCCATCCAACG 59 *** *** * * * ** * **** ** *** * * * consensus_9350#0 ATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAAT 279 consensus_9350#1 ATAAATCTGGGCATTATACATTTCATGGGTCAATACGATATGTAAATAAAACATTTCAAT 480 consensus_9350#2 GTTTATTAAAATGTGGTTCGTCTGACA----AACGCTATCTAGCAACAGTTAACTTTGGT 115 * ** * * * * * * ** * ** * ** * * ** * consensus_9350#0 TAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATA-TT 338 consensus_9350#1 TAAACAACGTGCATGACGTAAATAATATTACTATAATTGCTGAAAATGCCGGACATA-TT 539 consensus_9350#2 CCTACAAC-TGC-TCCTGTACCTAAGGTTTTCAAAGTATTGGAGGATTTCCGACAGAATC 173 ***** *** * *** *** ** * * * ** ** * **** * * consensus_9350#0 AATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATT-CTGGACCGGTAATATTGAAT 397 consensus_9350#1 AATTATGGATCTGAAATGTATTCGGATGTAAAGGGTATTACTGGACCGGTAATATTGAAT 599 consensus_9350#2 AACCCTGGGTAAATAGTGAATATTATGTTGGTTGGTTAGACGTGTGGGGCGGGGATCATC 233 ** *** * * ** ** * *** * * ** * * consensus_9350#0 GGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAAT 457 consensus_9350#1 GGAAAAGAACTTCGAGATTGGACAATGATTCCAATTAGAGATCCGTTTGCTATAGTGAAT 659 consensus_9350#2 ATAAAACTAATCCT-GAATGGGCGGTGGATGGACTGAATCGCCTAATCAGC-TACTCGAT 291 **** * * * ** *** * ** * * * * * * ** * ** consensus_9350#0 ATGAATAAAATGAAACATTTTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTAT 517 consensus_9350#1 ATGAATAAAATGAAACATTNTCTGTCAGAAAAGAAGTGGCCAGTACCTGGATCTATTTAT 719 consensus_9350#2 GAGAGTCAACGTAAATAT-GTATATGTTTCAGGGTGGAACTAAT-TTTGGATTTTGGAAC 349 ** * ** *** ** * * * * * * * * * ***** * * consensus_9350#0 CATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTTTGTG 577 consensus_9350#1 CATGGGGTATTCATTGTTGAGGAGTTGGGAGATACTTTCATCCAACCTGATAGTTNTGTG 779 consensus_9350#2 GGTGGTGCAAGACCTGAAT----------------------------------------- 368 *** * * ** consensus_9350#0 AGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATCAGCAACAAGGACCA 637 consensus_9350#1 AGAGGAATAATATCAATTAATCGTCACCATGTAGGACGATTTGATN-------------- 825 consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 CAGCTTCGACTGTATGTACCGAAAACATTTTTAAAACTGGGTAGAAATCATATAACAATC 697 consensus_9350#1 ------------------------------------------------------------ consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 ACAGAATTACAAGGTCCTATAAAAAATGATGCACATCATGTTCATATTACATTTCATGAT 757 consensus_9350#1 ------------------------------------------------------------ consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 CAAATGCTTTGGAAGTAATTATTTATCATTATGTGAACGTCCGTTTTAAGCCTTACAACT 817 consensus_9350#1 ------------------------------------------------------------ consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 TATTCATTGGACAGAACTAATTTTCAAATTTCTTTTATTCATTATTATTTTTATTGCTGC 877 consensus_9350#1 ------------------------------------------------------------ consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 CTGTTAATATACACAATAAACATTGACCATTTGTTAGATTCTCGTTAGTTTCTAAATGTT 937 consensus_9350#1 ------------------------------------------------------------ consensus_9350#2 ------------------------------------------------------------ consensus_9350#0 CTAAAAGTACATGTGTTT 955 consensus_9350#1 ------------------ consensus_9350#2 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||