These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 814 fasta sequence [GCCAGAATTTGGCAGAGGGCGCTTCGATTGAGTGGCTACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGGTTGGATTGGTCAATTACTAATGTTGCAAGACTNTACACATATCAACAATTNTATGCATTNTGAATATACTATTGTGCAGAATTATATTCAAACGAAATCCGGAAGGGCCGCGTGAGAAATATAACGTNTGTTCATTTTTGTGACCGGTTTCTCTTGNTATAACG] [+] EMBL CD080829 [GCCAGAATTTGGCAGAGGGCGCTTCGATTGAGTGGCTACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGGTTGGATTGGTCAATTACTAATGTTGCAAGACTNTACACATATCAACAATTNTATGCATTNTGAATATACTATTGTGCAGAATTATATTCAAACGAAATCCGGAAGGGCCGCGTGAGAAATATAACGTNTGTTCATTTTTGTGACCGGTTTCTCTTGNTATAACG] [+] EMBL CD133468 [ AGTGGCTACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATATGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAT ] consensusID : consensus_9351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 758 fasta sequence [ACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA-GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA---AACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAATAAAC-GATTA] [+] EMBL AI975342 [ACCATCGTAGCTCAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAA ] [+] EMBL CD083010 [ ctAGTAATTTCTTTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGNCAGACTNTACA ] [+] EMBL BF936825 [ TATCCGGAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA AACGAAATCCGGAAGGCCCGCGTGAAG ATATTACG ] [+] EMBL CD081192 [ acgcggnATTTTCANCAACATAACTTTTATTATGTCGAGAACAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTT ACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA AACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAATAAAC GATT ] [-] EMBL CD075020 [ TTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCA AACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAAGAAACGGATTA] [-] EMBL CD076595 [ ttgGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAA GGCCTTTCCCAATCATTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTCAAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTCACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGTTGGATTGGTCAATTACTAATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAGAATTATATTCATAGAACGAAATCCGGAAGGCCCGCGTTAAGAATATAACGTTTTGTTTCATTTTTGTGACCGGTTTCTTCTTTGTAATAAAC GATTA] consensusID : consensus_9351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CGGCACGAGGCCGGAAGGTAAGAAGCTATTTGTTTTTGTACGTATTTCAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAGTTTGTTAATAAATAATGCTTACAGATTTTTGTACATACAGTTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGT] [+] EMBL CD081297 [CGGCACGAGGCCGGAAGGTAAGAAGCTATTTGTTTTTGTACGTATTTCAAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTTTCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAGGATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGTAACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAGTTTGTTAATAAATAATGCTTACAGATTTTTGTACATACAGTTCACCCAGGTATTAAGTCATCAGGTATGCCTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCATAAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTGCATCAATTACTGCATTAGTTTGCTACAGCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9351#0 GCCAGAATTTGGCAGAGGGCGCTTCGATTGAGTGGCTACCATCGTAGCTCAGTAATTTCT 60 consensus_9351#1 -------------------------------------ACCATCGTAGCTCAGTAATTTCT 23 consensus_9351#2 ------------------------------------------------------------ consensus_9351#0 TTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGG 120 consensus_9351#1 TTTACATGGCTTCTGAGCGTTCCTGGAAGCCTCTGAGTCTTTTTCACGTAGAATATCCGG 83 consensus_9351#2 ------------CGGCACGAGGCCGGAAGGTAAGAAGCTATTTGTTTTTGTACGTATTTC 48 * * ** * ***** ** *** * * consensus_9351#0 AAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTT 180 consensus_9351#1 AAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTT 143 consensus_9351#2 AAGCTGATGCTTTTGGAAAGCTCCTGGCGTATTCCAGTATGGTACCAATATTCATTATTT 108 ************************************************************ consensus_9351#0 TCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAG 240 consensus_9351#1 TCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACA---------------- 187 consensus_9351#2 TCAGCAACATAACTCTTATTATGTCGAGAAGAGATTTGCATACAGTATTATCAATTGTAG 168 ******************************************** consensus_9351#0 GATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGT 300 consensus_9351#1 ---------------------ATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGT 226 consensus_9351#2 GATTAACGCTTAAGTCTCAAGATATTTTATTTTTGTGGTTGTCTGATCAATGAATTGAGT 228 *************************************** consensus_9351#0 AACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCA----------- 349 consensus_9351#1 AACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCA----------- 275 consensus_9351#2 AACTATCTTCTCAAATATATCATCAAGCAACCAAGGCCTTTCCCAATCAGTTTGTTAATA 288 ************************************************* consensus_9351#0 ------------------------------TTCACCCAGGTATTAAGTCATCAGGTATGC 379 consensus_9351#1 ------------------------------TTCACCCAGGTATTAAGTCATCAGGTATGC 305 consensus_9351#2 AATAATGCTTACAGATTTTTGTACATACAGTTCACCCAGGTATTAAGTCATCAGGTATGC 348 ****************************** consensus_9351#0 CTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCA 439 consensus_9351#1 CTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCA 365 consensus_9351#2 CTTCAAACCATGCACAATTCATGGGCTTTTTTTGTGCATACATTGGATTTTTCCTCTTCA 408 ************************************************************ consensus_9351#0 TAAG----------CGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTG 489 consensus_9351#1 TAAGGCTCAATCAGCGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTG 425 consensus_9351#2 TAAG----------CGATCCTTCAGTCGCCAGTTCACAACATCTGTTTACTTAGTTTGTG 458 **** ********************************************** consensus_9351#0 CATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTC 549 consensus_9351#1 CATCAATTACTGCATTAGTTTGCTACAGCAGGGTTTATTTATTGTATCATACTTCTACTC 485 consensus_9351#2 CATCAATTACTGCATTAGTTTGCTACAGCAGT---------------------------- 490 ******************************* consensus_9351#0 AAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTC 609 consensus_9351#1 AAGTTGTAGTTGGGATCATGATAGGTGGAATTTCCGGGATAATCTGGTTCTTAATTGTTC 545 consensus_9351#2 ------------------------------------------------------------ consensus_9351#0 ACTATGCAATAACACCGATATTTCCACGGTTCACGGATAGGTTGGATTGGTCAATTACTA 669 consensus_9351#1 ACTATGCAATAACACCGATATTTCCACGGTTCACGGATAG-TTGGATTGGTCAATTACTA 604 consensus_9351#2 ------------------------------------------------------------ consensus_9351#0 ATGTTGCAAGACTNTACACATATCAACAATTNTATGCATTNTGAATATACTATTGTGCAG 729 consensus_9351#1 ATGTTGCAAGACTTTACACATATCAACAATTTTATGCATTTTGAATATACTATTGTGCAG 664 consensus_9351#2 ------------------------------------------------------------ consensus_9351#0 AATTATATTCAAACGAAATCCGGAAGGGCCGCGTGAGAAATATAACGTNTG--TTCATTT 787 consensus_9351#1 AATTATATTCAAACGAAATCCGGAAGGCCCGCGTGAAGAATATAACGTTTTGTTTCATTT 724 consensus_9351#2 ------------------------------------------------------------ consensus_9351#0 TTGTGACCGGTTTCTCTTGNTATAACG-------- 814 consensus_9351#1 TTGTGACCGGTTTCTTCT-TTGTAATAAACGATTA 758 consensus_9351#2 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||