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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1015 fasta sequence
[ACTTCTAAAATCTTTGTATTAATTAGTAATAAAGACAAACATTACGAATTGTATGCATACATATACATACAAAGTGGACAACAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGGAGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAAAAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAG-AAAGGGAGCATTATCATCAGCAACAAAATGAAAAAGAAATACTAAATTACAAAGTAACTTAAGAATTGATACAAAAGAAACGGCGCCAACCCTTTTTAAGAGTTTTACACTTGTTATTGTTCTCTGCTATAATACGAAATGAGTGACTGTCGGTCATTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTATATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTACTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCAA]
[+] EMBL CD073949 [ACTTCTAAAATCTTTGTATTAATTAGTAATAAAGACAAACATTACGAATTGTATGCATACATATACATACAAAGTGGACAACAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGGAGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAAAAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAG AAAGGGAGCAT ]
[-] EMBL AI975122 [ AATTGTATGCATACATATACATACAAAGTGGCCACCAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGGAGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAAAAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATT ]
[+] EMBL CD196797 [ CAGCTTTGGTTTAGTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAG AA ]
[+] EMBL CD196747 [ CAGCTTTGGTTTAGTTTATATATGTGTATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAATAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAGATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGCGGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAAAAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTAC ]
[-] EMBL CD079690 [ GAAAGAAACAAGTA TAAGAAAAGACTAGATANAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAATTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACAAAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGACTAGATAATAAATTAAGCAATTTACATTTTCAGAAAAGGGAGCATTATCATCAGCAACAAAATGAAAAAGAAATACTAAATTACAAAGTAACTTAAGAATTGATACAAAAGAAACGGCGCCAACCCTTTTTAAGAGTTTTACACTTGTTATTGTTCTCTGCTATAATACGAAATGAGTGACTGTCGGTCATTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTATATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTACTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCAA]
[+] EMBL CD156583 [ ACTGTCGGTCATTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTATATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTACTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCA ]
consensusID : consensus_9352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 591 fasta sequence
[AATAGCCAAACATTCGGCCTTTTCCTTATCTATAGGCTCTTCACCAACTTTAGACAATTCTAATAAACGTCCAATATCATTACGTAGATCACAAGCACAACCAATAAGAAGAAATATAGGACCCGGTATTAAATTAGCTTCATTTACACTTTTTAACCCACGACTAGTGTGTACAG-AAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGTTAAGAATAATGGGCGCAGACGCTAGTTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATCTGGTCGGACGACAGAGAAACACAGTAAGATAACATGTGCATCCAAATATGACAAATGTCTCAAAGAACTAACTTCTTCTTTTCCTCCTGTGTCACAGATTTGTAGATGTACTGGTCGTGTATCAGCACACACTTCAACACAAAATGTATCTNAGGCAGATGGCCTGTATTCCGCTGGATAATCATTGGAAGTGTAGCTAACGAACAGGCTAGTTTTTCCAACTTGTTTATCGGCTATTAGGATGCACTT]
[-] EMBL CD156702 [AATAGCCAAACATTCGGCCTTTTCCTTATCTATAGGCTCTTCACCAACTTTAGACAATTCTAATAAACGTCCAATATCATTACGTAGATCACAAGCACAACCAATAAGAAGAAATATAGGACCCGGTATTAAATTAGCTTCATTTACACTTTTTAACCCACGACTAGTGTGTACAG AAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCA ]
[+] EMBL CD130619 [ TAGACAGTTCTAATAAACGTCCAATATCATTACGTAGATCACAAGCACAACCAATAAGAAGAAATATAGGACCCGGTATTAAATTAGCTTCATTTACACTTTTTAACCCACGACTAGTGTGTACAGNAAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGTTAAGAATAATGGGCGCAGACGCTAGTTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATCTGGTCGGACGACAGAGAAACACAGTAAGATAACATGTGCATCCAAATATGACAAAT ]
[+] EMBL CD097245 [ TACAG AAGATTTTGATTTAGTGGGTACTGACGCTGAAAAACTATCAGCATTTCTTCGTGTTGTGGATAGGCCGAATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGTTAAGAATAATGGGCGCAGACGCTAGTTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATCTGGTCGGACGACAGAGAAACACAGTAAGATAACATGTGCATCCAAATATGACAAATGTCTCAAAGAACTAACTTCTTCTTTTCCTCCTGTGTCACAGATTTGTAGATGTACTGGTCGTGTATCAGCACACACTTCAACACAAAATGTATCTNAGGCAGATGGCCTGTATTCCGCTGGATAATCATTGGAAGTGTAGCTAACGAACAGGCTAGTTTTTCCAACTTGTTTATCGGCTATTAGGATGCACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9352#0 ACTTCTAAAATCTTTGTATTAATTAGTAATAAAGACAAACATTACGAATTGTATGCATAC 60
consensus_9352#1 ------------------------------------------------------------
consensus_9352#0 ATATACATACAAAGTGGACAACAAAAGTTACTGAACAAACAAAGGGAAAATAGGTTTTGG 120
consensus_9352#1 ------------------------------------------------------------
consensus_9352#0 AGAAAAGAAAGCAACGACTGGATGTACAAAGTCATACATATAAATAAATACATATGCAAA 180
consensus_9352#1 ------------------------------------------------------------
consensus_9352#0 AAATGTAAATCAGAACGGCGTAAAAACAATTCACAGAGTAGATATTACAGCTTTGGTTTA 240
consensus_9352#1 ------------------------------------------------------------
consensus_9352#0 GTTTATATATGTATATCTGGCATACACTTCAGGTATGACACATTAATTAATAGTTTTAAA 300
consensus_9352#1 ------------------------------------------------------------
consensus_9352#0 TAGAATAATGTACACAAATGTGATAAAATCACGACATGAGCGAACGTAAGTTATGCGAAG 360
consensus_9352#1 -----------------------------------------AATAGCCAAACATTCGGCC 19
* * * ** **
consensus_9352#0 ATTTGTATATATAAATAGGAATTATAAGTAAATGATGAGTTCAGCAGGTATTAAATGAGC 420
consensus_9352#1 TTTTCCTTATCTATAGGCTCTTCACCAACTTTAGACAATTCTAATAAACGTCCAAT-ATC 78
*** *** ** * * * * ** * * * * * *** * *
consensus_9352#0 GGAAATGAGTTCATAATCACCGGATAATACGAAAAACTTGAAAGAAACAAGTATTAAGAA 480
consensus_9352#1 ATTACGTAGATCACAAGCAC-AACCAATAAGAAGAAAT--ATAGGACCCGGTATTAAATT 135
* ** *** ** *** **** *** ** * * ** * * *******
consensus_9352#0 AAGACTAGATAAAGTTAATTGAGTTTCAATCTTTTCAGTGCATAAAACAGGGAAATAGAA 540
consensus_9352#1 AGCTTCATTTACACTT--TTTAACCCACGACTAGTGTGTACAGAAGATTTTGATTTAG-- 191
* * ** * ** ** * ** * ** ** ** * ** ***
consensus_9352#0 TTGTAAATTTGACATAAATACACAACCATATCATCTACCAGTATAGTTAGACAAGAAACA 600
consensus_9352#1 -TGGGTACT-GACGCTGAAAAACTATCA--GCATTTCTTCGTGTTGT-GGATAGGC--CG 244
** * * *** * * ** * ** *** * ** * ** ** * * *
consensus_9352#0 AAAAATCATTAATTACTAAATAAAGTACTATAAAATAAACATAAATGAC-TAGATAATAA 659
consensus_9352#1 AATAGTTTTGAAGCAGTTTGTTCAGCAGCACTGT-TAAGAATAATGGGCGCAGACGCTAG 303
** * * * ** * * * ** * * *** **** * * *** **
consensus_9352#0 ATTAAGCAATTTAC--ATTTTCAGAAAGGGAGCATTATCATCAGCAACAAAATGAAAAAG 717
consensus_9352#1 TTCTTTCAACCAAACAGTTTTCAAAGATCTAAAAGTATC-----TGGTCGGACGACAGAG 358
* *** * ****** * * * * **** * ** * **
consensus_9352#0 AAATACTAAATTACAAAGTAACTTAAGAATTGATACAAAAGAAACGGCGCCAACCCTTTT 777
consensus_9352#1 AAACACA-----GTAAGATAACATGTGCATCCAAATATGACAAATG----------TCTC 403
*** ** ** **** * * ** * * * * *** * * *
consensus_9352#0 TAAGAGTTTTACACTTGTTATTGTTCTCTGCTATAATACGAAATGAGTGACTGTCGGTCA 837
consensus_9352#1 AAAGAACTAACTTCTTCTTTTCCTCCTGTGTCACAGATTTGTAGATGTACTGGTCGTGTA 463
**** * *** ** * * ** ** * * * ** **** *
consensus_9352#0 TTATATGGTTATTGTCAACACTATTATCATTATTAGTAGCTTTTGTGCAATCCCCATTAT 897
consensus_9352#1 TCA-GCACACACT-TCAACACAAAATGTATCTNAGGCAGATGGCCTGTATTC--CGCTGG 519
* * * * ******* * ** * ** * ** * ** * *
consensus_9352#0 ATGATAATGATCCATTTGACTTTGGTTCACGCAATAATACTGGACCACCTGAATCAGCTA 957
consensus_9352#1 ATAATCATTGGAAGTGTAGCTAACGAACAGGC--TAGTTTTT--CCAACTTGTTTATCGG 575
** ** ** * * ** * ** ** ** * * *** ** * * *
consensus_9352#0 CTTTGAGACCACACCAAATAGCTAGATCGAAAACAGTCTTAAGATTTTTCTGAGTCAA 1015
consensus_9352#1 CTATTAGGATGCACTT------------------------------------------ 591
** * ** ***
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||