cluster # 9358

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Schistosoma mansoni
cluster # 9358 cluster # 9358 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9358#0 length = 962 sequences # 7

consensus_9358#1 length = 225 sequences # 2

consensusID : consensus_9358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 962
fasta sequence

                              [ATATGGTAATGCTACTATGTTAGTTTTAACTGTTGGAACTGGTGTACATGGTTTTACATTGGATCCAGCAATTGGTGAATTCATACTAACACATCCTAATATCTCTATTAAACCACGCGGAAATATTTATTCAATTAATGAAGGTTATGCAAGTCTTTGGGATAGTGCTATTACAGAATATATTCGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATCTATGGTTGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAATTATAGAACAAGCTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACCAAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATTAATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAA-GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATTTGTGTGTGTGTGGGTGTGTGTGGGTGTATGTGCGCGTGTTTGTGTGTGTGTTTGTTCATTTTGAATTAA]

[-] EMBL CD132112             [ATATGGTAATGCTACTATGTTAGTTTTAACTGTTGGAACTGGTGTACATGGTTTTACATTGGATCCAGCAATTGGTGAATTCATACTAACACATCCTAATATCTCTATTAAACCACGCGGAAATATTTATTCAATTAATGAAGGTTATGCAAGTCTTTGGGATAGTGCTATTACAGAATATATTCGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATCTATGGTTGCTGATGTTCGCCGTACATTACTTTATGGTGGAATTTTTC TTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD080385             [                                                                                                                                                                                        CGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATCTATGGTTGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAATTATAGAACAAGCTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACCAAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATTAATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAA GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTNTATTATG                                                                                                             ]
[-] EMBL CD150259             [                                                                                                                                                                                                                                                      TGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTACAAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAATTATAGAACAAGCTGGTGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD074300             [                                                                                                                                                                                                                                                                                                                                                                                   CTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACCAAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATTAATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAA GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATTTGTGTGTGTGTGGGTGTGTGTGGGTGTATGTGCGCGTGTTTGTGTGTGTGTTTGTTCATTTTGAATTAA]
[+] EMBL CD142880             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TAATAAAAGAAGAAGAAGAATGTTACCAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAGCTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCGATTGTAGATAAATTTCTTTATTTTATTCTAGT                                                                                                                                                                                                          ]
[+] EMBL CD086372             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAAGAA GAAACAAACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGATGATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTCCTTTTCATTGTTTTCTATCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCA                                                                             ]
[-] EMBL CD135442             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATTTGTAGCTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAGACAAACATATAATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTCTTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGTTCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATT                                                                     ]




>consensus_9358#0
ATATGGTAATGCTACTATGTTAGTTTTAACTGTTGGAACTGGTGTACATGGTTTTACATT
GGATCCAGCAATTGGTGAATTCATACTAACACATCCTAATATCTCTATTAAACCACGCGG
AAATATTTATTCAATTAATGAAGGTTATGCAAGTCTTTGGGATAGTGCTATTACAGAATA
TATTCGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATC
TATGGTTGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTAC
AAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAAT
TATAGAACAAGCTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACC
AAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATT
AATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAAGAAACA
AACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGAT
GATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCA
TATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATA
ATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTC
TTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGT
TCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATTTGTGTGT
GTGTGGGTGTGTGTGGGTGTATGTGCGCGTGTTTGTGTGTGTGTTTGTTCATTTTGAATT
AA

consensusID : consensus_9358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 225
fasta sequence

                              [TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAACTAACAACAACATATATTATTCAATTGTAGATAAATTCTTTATTTATCAAGTAATAGTCAGTTTTTTTCTTTCATGGTTTCTTCTGACAAAGGTTGGATACTATGGTTTGGACTTAATGTCCATCA]

[+] EMBL AW146483             [TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAACTAACAACAACATATATTATTCAATTGTAGATAAATTCTTTATTTATCAAGTAATAGTCAGTTTTTTTCTTTCATGGTTTCTTCTGACAAAGGTTGGATACTATGGTTTGGACTTAATGTCCATCA]
[+] EMBL AW146490             [TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAACTAACAACAACATATATTATTCAATTGTAGATAAATTCTTTATTTATCAAGTAATAGTCAGTTTTTTTCTTTCATGGTTTCTTCTGACAAAGGTTGGATACTATGGTTTGGACTTAATGTCCATCA]




>consensus_9358#1
TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCATA
TGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAACTAACAACAACATATATTATT
CAATTGTAGATAAATTCTTTATTTATCAAGTAATAGTCAGTTTTTTTCTTTCATGGTTTC
TTCTGACAAAGGTTGGATACTATGGTTTGGACTTAATGTCCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9358#0      ATATGGTAATGCTACTATGTTAGTTTTAACTGTTGGAACTGGTGTACATGGTTTTACATT 60
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      GGATCCAGCAATTGGTGAATTCATACTAACACATCCTAATATCTCTATTAAACCACGCGG 120
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      AAATATTTATTCAATTAATGAAGGTTATGCAAGTCTTTGGGATAGTGCTATTACAGAATA 180
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      TATTCGAATGAAGAAATTTCCTGAATCAGGTAAACCTTATAGCGCACGTTATTGTGGATC 240
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      TATGGTTGCTGATGTTCACCGTACATTACTTTATGGTGGAATTTTTCTTTATCCAGGTAC 300
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      AAAGCAATCTCCTAAAGGGAAGTTAAGATTATTATATGAATGTAATCCAATGGCATTAAT 360
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      TATAGAACAAGCTGGTGGTTTAGCTACAAATGGTAAATTATCTATATTAGATATTCAACC 420
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      AAATCATATACATGATCGTGCACCAATATTTCTTGGTAGTAAAGATGATATTATAGAATT 480
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      AATGAATATTATTAAAAAATTCTCACATTATGAATAATAAAAGAAGAAGAAGAAGAAACA 540
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      AACAATTGTCGCTTTAAATGATTATTATTGTTGCCATAGTAACTCTGAGATGATGCCGAT 600
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      GATTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCA 660
consensus_9358#1      --TTTGTAACTCAAATGGATAATTTTTGATGGAGTGTTATTCTCTAAGCTGGATGATCCA 58
                        **********************************************************

consensus_9358#0      TATGATCCAGATCAAAGAATAAAACTCTGATCAAAAAGCAAACAAACAAACAAACATATA 720
consensus_9358#1      TATGATCCAGATCAAAGAATAAAACTCTGATCAATAAGCAA-CTAACAA--CAACATATA 115
                      ********************************** ****** * *****   ********

consensus_9358#0      ATTATTCAATTGTAGATAAATTTCTTTATTTTATTCTAGTAAATAGTACAGTTTTTTTTC 780
consensus_9358#1      -TTATTCAATTGTAGATAAATT-CTTTATTTA--TCAAGTAA-TAGT-CAGTTTTTTTC- 168
                       ********************* ********   ** ***** **** **********  

consensus_9358#0      TTTTCATTGTTTTCTTTCTGACCAAACGGAGTTGGATACTACTGTTTTGTACTTTATTGT 840
consensus_9358#1      -TTTCATGGTTT--CTTCTGACAAAG----GTTGGATACTA-TGGTTTGGACTTAAT-GT 219
                       ****** ****   ******* **     *********** ** **** **** ** **

consensus_9358#0      TCATTTTATTATGAATTATTTAGCTTTTCACATTTTGTGAATGCATGCTTATTTGTGTGT 900
consensus_9358#1      CCATCA------------------------------------------------------ 225
                       ***                                                        

consensus_9358#0      GTGTGGGTGTGTGTGGGTGTATGTGCGCGTGTTTGTGTGTGTGTTTGTTCATTTTGAATT 960
consensus_9358#1      ------------------------------------------------------------
                                                                                  

consensus_9358#0      AA 962
consensus_9358#1      --