cluster # 9360

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Schistosoma mansoni
cluster # 9360 cluster # 9360 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9360#0 length = 183 sequences # 7

consensus_9360#1 length = 171 sequences # 2

consensusID : consensus_9360#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 183
fasta sequence

                              [ATATGACGCCAAGGACGATGGGCAGACTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]

[+] EMBL CD092521             [ATATGACGCCAAGGACGATGGGCAGACTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGca                                                          ]
[+] EMBL CD092522             [      CGCCAAGGACGATGGGCAGACTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGTAGAGAGTGGGT]
[+] EMBL CD092535             [                           TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCATGAGAGAGTGGGT]
[+] EMBL CD123789             [                           TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]
[+] EMBL CD123821             [                           TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]
[+] EMBL CD123767             [                           TATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATACTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]
[+] EMBL CD123781             [                           TATTATTATTATTATTATCCCCAGTCAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]




>consensus_9360#0
ATATGACGCCAAGGACGATGGGCAGACTATTATTATTATTATTATCCCCAGTTAGTTATA
TAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATAT
TGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTG
GGT

consensusID : consensus_9360#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 171
fasta sequence

                              [TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]

[+] EMBL CD092540             [TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]
[+] EMBL CD092550             [TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT]




>consensus_9360#1
TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTATATAAGCAATGAAG
CAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATATTGGTAGTCGTTA
AATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGTGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9360#0      ATATGACGCCAAGGACGATGGGCAG-ACTATTATTATTATTATTATCCCCAGTTAGTTAT 59
consensus_9360#1      -------------TATTATTATTATTATTATTATTATTATTATTATCCCCAGTTAGTTAT 47
                                    *  **    *  * ********************************

consensus_9360#0      ATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATA 119
consensus_9360#1      ATAAGCAATGAAGCAACTAGTAGTAATATGTATAGGTGGTATAAATCTACCAATTTAATA 107
                      ************************************************************

consensus_9360#0      TTGGTAGTCATTAAATACAATGTATATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGT 179
consensus_9360#1      TTGGTAGTCGTTAAATACAATGTGTATATATTCACTAGAAAGGAAGGCCCAGGAGAGAGT 167
                      ********* ************* ************************************

consensus_9360#0      GGGT 183
consensus_9360#1      GGGT 171
                      ****