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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1052 fasta sequence
[CTCGCGGCCAGNAATTCGGTCCGAGGGCATGTTTTA-GGTTGCCTGAAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATCTGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT-TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT]
[+] EMBL CD077930 [CTCGCGGCCAGNAATTCGGTCCGAGGGCATGTTTTA GGTTGCCTGAAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTAC ]
[+] EMBL SMAA8332 [ TGTTGCATGGTTGCCTGAAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCACCGCCCTGTAAC ]
[+] EMBL CD083047 [ AAGAGTGAATGGTGCTTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAATGGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAATAAAGTCAGTCAATCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATCTGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCCACCCAATAAc ]
[+] EMBL CD084290 [ acgaggcTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATACCATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATGATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATCTGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGAT ]
[-] EMBL CD077335 [ TTTTCAGAAATTCTGAACGTTTCTTCTTTTCAAAAGGAAGTGTTAACGTCACATTCCACATAGTCGGGGGTTTTCCAGATCCACGAAACATCTCACATTCTATACTAGTTGAAATACTTTCATCGCTCACATGTAATGATCACAGTTATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAATCACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT]
[-] EMBL SMAA25712 [ TAAANCCANCCAAATAAACCCAGCTCGTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCTCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT]
[-] EMBL BG932726 [ CTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTT TCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGa ]
[+] EMBL BG932694 [ gCTGTTCCTGTGTTAAGACTGTTACGCCTATAATGTGTACATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTTATCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAAT ]
consensusID : consensus_9363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[CCGCGCACACCAAATAAAAGGGGCGTATTGTTACTTTAAAAAAAAGGGGGGTTCGCCCAACGGTTCTCAATATTAGGGGCACAAACAAGAATAAAAAATTTTCTTTTTTTTAGAGCCCAATTAAAAATTTTTTGGTCGATCACTGTGTAAGGTTCGCAGTAAAAACCCCCAATTTTAGGTATCGGGAAAATTTTTTCCGGAAGCTGTATTGATGAAAAATCGCATCTTNCGAGATTGGGTGTTATATACAGTATTAAAACCACCCAAATAAACCCAGNTTGTATAAGTTGAAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCTCA]
[-] EMBL CD076869 [CCGCGCACACCAAATAAAAGGGGCGTATTGTTACTTTAAAAAAAAGGGGGGTTCGCCCAACGGTTCTCAATATTAGGGGCACAAACAAGAATAAAAAATTTTCTTTTTTTTAGAGCCCAATTAAAAATTTTTTGGTCGATCACTGTGTAAGGTTCGCAGTAAAAACCCCCAATTTTAGGTATCGGGAAAATTTTTTCCGGAAGCTGTATTGATGAAAAATCGCATCTTNCGAGATTGGGTGTTATATACAGTATTAAAACCACCCAAATAAACCCAGNTTGTATAAGTTGAAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTGTAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATCCTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAGCTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGCACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGTTCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTGCATCAGAAGACCCTTTAACAAACGTTAAAATATAACCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9363#0 CTCGCGGCCAGNAATTCGGTCCGAGGGCATGTTTTAGGTTGCCTGAAGAGTGAATGGTGC 60
consensus_9363#1 ------------------------------------------------------------
consensus_9363#0 TTAATTTTGATGGGAAGAGATATAATTGCGAGAAGTCGTCGATATACGTATTCGCTCAAT 120
consensus_9363#1 ------------------------------------------------------------
consensus_9363#0 GGTTCTCTACAAGTTCATTTGTTAAGAGTATCGCGGATGATTTCAAAAAAAGTCAGTCAA 180
consensus_9363#1 ------------------------------------------------------------
consensus_9363#0 TCAACGTTGAGGATTGTCTTTCCTCAGTTTATGTTCATCAAGGTGAAATGGCCACTATAC 240
consensus_9363#1 ------------------------------------------------------------
consensus_9363#0 CATTACTGGCTACCAATGTACCTACAAGCAATATCATTCCAGAATACACAACTTCTGATG 300
consensus_9363#1 ------------------------------------------------------------
consensus_9363#0 ATGCAACATCCTGTTACATTGTTGTCTTGCGTTGTTCACTCGGTTGTTCGATAGGACATC 360
consensus_9363#1 ------------------------------------------------------------
consensus_9363#0 TGGATACTCCATTGCGCGTCAGGTCATTTTTCAGAAATTCTGAACGTTTCTTCTTTTCAA 420
consensus_9363#1 -------------------CCGCGCACACCAAATAAAAGGGGCGTATTGTTACTTTAAAA 41
* * ** * *** * ** * **** **
consensus_9363#0 AAG-GAAGTGTTAACGTCACAGTCCACATAGTCGGGGGTTTTC-CAGATCCACGAAACAT 478
consensus_9363#1 AAAAGGGGGGTTCGCCCAACGGTTCTCAATATTAGGGGCACAAACAAGAATAAAAAATTT 101
** * * *** * ** ** * ** * **** ** * *** *
consensus_9363#0 CTCACATTCTATA--CTAGTTGAAA-TACTTTCATCGCTCAC-ATGTAATGATCACAGTT 534
consensus_9363#1 TCTTTTTTTTAGAGCCCAATTAAAAATTTTTTGGTCGATCACTGTGTAAGGTTCGCAGT- 160
** ** * * * ** *** * *** *** **** ***** * ** ****
consensus_9363#0 ATGAACTTGGAGTATGCTGTATCGGTGAAAATAATATCCTTAGCTCTAGTGGTGAAAAAT 594
consensus_9363#1 AAAAACCCCCAATTTTAGGTATCGGGAAAATTTTTTCCGGAAGCTGTATTGATGAAAAAT 220
* *** * * * ******* *** * * * **** ** ** ********
consensus_9363#0 CACAACCTGCTATTTTGGGTGTTATCTTCAGTATTAAAACCAACCAAATAAACCCAGCTC 654
consensus_9363#1 CGCATCTTNCGAGATTGGGTGTTATATACAGTATTAAAACCACCCAAATAAACCCAGNTT 280
* ** * * * * *********** * ************** ************** *
consensus_9363#0 GTATAAGTTGGAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTG 714
consensus_9363#1 GTATAAGTTGAAAAGCACGTGGGCCTGTTCCTGTGTTAAGACTTTTACGCCTAGAATGTG 340
********** *************************************************
consensus_9363#0 TAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATC 774
consensus_9363#1 TAGATTCAGATGAAATAACTAACGTATTCAACCCGGAAAGGGGTTATCTAATTATAAATC 400
************************************************************
consensus_9363#0 CTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAG 834
consensus_9363#1 CTTTCCTGTACGTCCGCCCAGCTTTTGTGAATGCGCAAATCACATCTGAAGAAATGCGAG 460
************************************************************
consensus_9363#0 CTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGC 894
consensus_9363#1 CTAAGTCCACAACACCTGAGCAAGAACCTGCAACATACTTTGAAGGTCAGATTGCTGTGC 520
************************************************************
consensus_9363#0 ACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGT 954
consensus_9363#1 ACCGCATAAGGTTTCACTGCCCTAACTCACTACGTTGGTTTGAACGTGGTCCACTGATGT 580
************************************************************
consensus_9363#0 TCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTG 1014
consensus_9363#1 TCCGTTGTGTTCTAGATTCAAATAAACCGTGGGTCCCTTTAAATGAAGCTTCTGCAGTTG 640
************************************************************
consensus_9363#0 CATCAGAAGACCCTTTAACAAACGTTAAAATATAACCT-- 1052
consensus_9363#1 CATCAGAAGACCCTTTAACAAACGTTAAAATATAACCTCA 680
**************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||