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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 786 fasta sequence
[TAAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTACTCTGAAAGTNACCAAAGCTGAATATTTTTTGAGATGGANTTTCCGAACCGGAAGAATNATTCTNGCCCCANCNAAAAGAACCCCAACTCNGGAAANTCAATTCCCNTTTNGGGNAGCNCCTTGATTACTTTAATGAACTNGGGAACTNTCCNANCCAAATTCNNAACTTCAGTGATCTTTTCAAATGTCCNATANTGTNAAACAAGTGT]
[+] EMBL CD159423 [TAAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATCTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAAT ]
[-] EMBL CD159088 [ AAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTCTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATA ]
[+] EMBL AI976896 [ GATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCTAAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATCGAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAGAGGAAAATTTCAGCCATTAGACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATATACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGATTCTATCACTA ]
[+] EMBL AW466243 [ TCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTACTCTGAAAGTNACCAAAGCTGAATATTTTTTGAGATGGANTTTCCGAACCGGAAGAATNATTCTNGCCCCANCNAAAAGAACCCCAACTCNGGAAANTCAATTCCCNTTTNGGGNAGCNCCTTGATTACTTTAATGAACTNGGGAACTNTCCNANCCAAATTCNNAACTTCAGTGATCTTTTCAAATGTCCNATANTGTNAAACAAGTGT]
consensusID : consensus_9367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 785 fasta sequence
[TTGGCACGAGGCGCAAAGAAAAAGTAGAGGAAAATTTCAGCCATTAGTACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTC-GTGGAT-GGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATGTGACTGACTACTGAACATTTTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAGAAAAAATTTTATCTGTATAGTAGCTAAATACCTATCTTATAANNTGT]
[+] EMBL CD079587 [TTGGCACGAGGCGCAAAGAAAAAGTAGAGGAAAATTTCAGCCATTAGTACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTAATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTC GTGGAT GGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATGTGACTGACTACTGAACATTNTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAG AAAAATTNTATCTGTATAGTAGCTAAATACCTTTCTTATAANNTG ]
[-] EMBL CD073848 [ ATTTCACCGGTTGTCAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATATTTAGTGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTAGAATCACTTTCTTCGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGGATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTC GTGGAT GGATGTGTTGATTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCAACATGTGACTGACTACTGAACATTTTCAACTACATTTTTGAACAATCATCAACGTTTTGTATTTGACAGAAAAAATTTTATCTGGATAGTAGCTAAATACAAATCTTATAAttgat]
[+] EMBL CD134256 [ gatgcAAGTCGGTTACTAGGGAGTGTTG TTCTAT ACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGT ACCAAAGCAGAGTATTTTTTGAGATGGAGTTTCCG ACCGGAAGAGT AATCAAGCTCAAACGAAAAGACACCGACGTCAGGAAATCAATTGCCATTTGGGGAGCTCCTTGATGACTTTAATGAACTGGGAACTATCCGAACAAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAACAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATATGACTGACTACTGAACATTTTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAGAAAAAATTTTATCTGTATAGTAGCTAAATACCTCTCTTATA ]
[+] EMBL SM669 [ AACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAGTTTTT ]
consensusID : consensus_9367#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TGTTACTAGCACAATCAATTATAAGAAAGGTATTTAGCTACTATACAGATAAAATTTTTTCTGTCAAATACAAAACGTTGATGATTGTTCAGAAATGTAGTTGAAAATGTTCAGTAGTCAGTCATATGTAGAATTACGCTAGATACATATGGGTTACTAACACAAACGACACTTGTTTCACACTATTGGACATTTGAAATGATCACTGAAGTTTTGAATTTGTTCGGATAGTTCCCAGTTCATTAAAGTCATCAAGGAGCTCCCCAAATGGCAATTGATTTCCTGACGTCGGTGTCTTTTCGTTTGTGCTTGACTATGGAAATAAAATATAATATTTTTTCCAAAAGAAAATGGGATTCTTAGCAGATTTTGATAAACTAACATAATACATGGCACATGATACTTTTTTCACCATCACATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTATATATATATATATATATATATATATATATATATATAACGGTGTAAAGGATTGCAACATCGAACTGAATGCTAAAGGTGTATGAGCCTAGTGTTTGTTTCTCTATTCGTCTCACTACTAATCTTAAAGATGGAAAGATACTTATATTTC]
[+] EMBL CD134260 [TGTTACTAGCACAATCAATTATAAGAAAGGTATTTAGCTACTATACAGATAAAATTTTTTCTGTCAAATACAAAACGTTGATGATTGTTCAGAAATGTAGTTGAAAATGTTCAGTAGTCAGTCATATGTAGAATTACGCTAGATACATATGGGTTACTAACACAAACGACACTTGTTTCACACTATTGGACATTTGAAATGATCACTGAAGTTTTGAATTTGTTCGGATAGTTCCCAGTTCATTAAAGTCATCAAGGAGCTCCCCAAATGGCAATTGATTTCCTGACGTCGGTGTCTTTTCGTTTGTGCTTGACTATGGAAATAAAATATAATATTTTTTCCAAAAGAAAATGGGATTCTTAGCAGATTTTGATAAACTAACATAATACATGGCACATGATACTTTTTTCACCATCACATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATGTATATATATATATATATATATATATATATATATATATAACGGTGTAAAGGATTGCAACATCGAACTGAATGCTAAAGGTGTATGAGCCTAGTGTTTGTTTCTCTATTCGTCTCACTACTAATCTTAAAGATGGAAAGATACTTATATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9367#0 TAAATATCGCGTTACGGTTCAGTGATTGGTAGTCGACGCCAGACGTGATGTTTTCGTTCT 60
consensus_9367#1 ------------------------------------------------------------
consensus_9367#2 ------------------------------------------------------------
consensus_9367#0 AAGGAGAGTAAAGATGCAAGATGGTGTTTGTGAGCGTTTTGTTCGACGCTACTTATTATC 120
consensus_9367#1 ------------------------------------------------------------
consensus_9367#2 ------------------------------------------------------------
consensus_9367#0 GAAGAATTTCAAAGACACACTGAATGCATTCGAAATTGAGCATTCGAAAGAAAAAAGTAG 180
consensus_9367#1 -----------------------------TTGGCACGAGGC----GCAAAGAAAAAGTAG 27
consensus_9367#2 ------------------------TGTTACTAGCAC-AATCAATTATAAGAAAGGTATTT 35
* * ** ** *
consensus_9367#0 AGGAAAATTTCAGCCATTAG-ACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTA 239
consensus_9367#1 AGGAAAATTTCAGCCATTAGTACATTATCGATCAACTTCAAGAAGCGATCTACGATTCTA 87
consensus_9367#2 AGCTACTATACAGA---TAAAATTTTTTCTGTCAAATACAAAACG---TTGATGATTGTT 89
** * * *** ** * ** ** **** * *** * * * * **** *
consensus_9367#0 ATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGT 299
consensus_9367#1 ATTTAACTCAGTTGACCAATCAGTGGAATTTCTTAGAAAATACACTATTTCACCGGTTGT 147
consensus_9367#2 CAGAAATGTAGTTGAA-AAT--GTTCAGTAGTCAGTCATATGTAGAATTACGCTAGATAC 146
** ****** *** ** * * * ** * *** * * * *
consensus_9367#0 CAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAG 359
consensus_9367#1 CAGGTGATAAACAACTTGCTGCCAATGAGCTCAAAGTGCATGTTTTTCGTACATACTTAG 207
consensus_9367#2 ATATGGGTTACTAAC-----ACAAACGA-CACTTGTTTCACACTATTGG-ACATTTGAAA 199
* * * *** * ** ** * * * ** * ** * **** *
consensus_9367#0 TGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTT 419
consensus_9367#1 TGCAGGCTAAAATAAAGAAACGTCAAGCAAAAATGACTGAGTTTTTCGAATCACTTTCTT 267
consensus_9367#2 TGATCACTGAAGTTTTGAAT--TTGTTCGGATAGTTCCCAGTTCATTAA---AGTCATCA 254
** ** ** * *** * * * * * **** * * * *
consensus_9367#0 CGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGG 479
consensus_9367#1 CGCAGTTTTCCTTTGGAAAAGAGGAATGGCAAAGTTGGTGTGCTTTGCCTTACGCAGCGG 327
consensus_9367#2 AGGAGCTCCCCAAATGGCAATTGATTTCCTGACGTCGGTGTCTTTTCGTTTGTGC----- 309
* ** * ** * ** * * * ** ***** *** ** **
consensus_9367#0 ATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGA 539
consensus_9367#1 ATCCAAAAATGCATCCAGAGTTTTTTATGTATTTTACAAAGTCGTGGATGGATGTGTTGA 387
consensus_9367#2 --TTGACTATGGAAATAAAATATAATATTTTTTCCAAAAGAAAATGGGATTCTTAGCAGA 367
* *** * * * * * *** * ** * ** *** * * **
consensus_9367#0 TTCTATCACTAACAAACTTCCTCTGTTTGATAAATTACTCTGAAAGTNACCAAAGCTGAA 599
consensus_9367#1 TTCTATCACTAACAAACTTCCTCTGTTTGATAAATTATTCTGAAAGTAACCAAAGCAGAG 447
consensus_9367#2 TTTTGATA--AACTAACATAATACATGGCACATGATACTTTTTTCACCATCACATTCTCT 425
** * * *** *** * * * * * ** * * * ** *
consensus_9367#0 TATTTTTTGAGATGGANTTTCCGAACCGGAAGAATNATTCTNGCCCCANCNAAAAGAACC 659
consensus_9367#1 TATTTTTTGAGATGGAGTTTCCGAACCGGAAGAGTAAATCAAGCACAAACGAAAAGA-CA 506
consensus_9367#2 CTCTCTCTCTCTCTCTCTCTCTCTATGTATATATATATATATATATATATATATATATAT 485
* * * * ** * * * * * * *
consensus_9367#0 CCAACTCNGGAAANTCAATTCCCNTTTNGGGNAGCNCCTTGATTACTTTAATGAACTNGG 719
consensus_9367#1 CCGACGTCAGGAAATCAATTGCCATTTGGGGA-GCTCCTTGATGACTTTAATGAACTGGG 565
consensus_9367#2 ATATAACGGTGTAAAGGATTGCAACATCGAACTGAATGCTAAAGGTGT--ATGAGCCTAG 543
* *** * * * * * * * **** * *
consensus_9367#0 GAACTNTCCNANCCAAATTCNNAACTTCAGTGATCTTTTCAAATGTCCNATANTGTNAAA 779
consensus_9367#1 -AACTATCCGAAC-AAATTCAAAACTTCAGTGATCATTTCAAATGTCCAATAGTGTGAAA 623
consensus_9367#2 TGTTTGTTTCTCT---ATTCGTCTCACTACTAATCTTAAAGATGGAAAGATACTTATATT 600
* * **** * * * *** * * * *** * *
consensus_9367#0 CAAGTGT----------------------------------------------------- 786
consensus_9367#1 CAAGTGTCGTTTGTGTTAGTAACCCATATGTATCTAGCGTAATTCTACATGTGACTGACT 683
consensus_9367#2 TC---------------------------------------------------------- 602
consensus_9367#0 ------------------------------------------------------------
consensus_9367#1 ACTGAACATTTTCAACTACATTTCTGAACAATCATCAACGTTTTGTATTTGACAGAAAAA 743
consensus_9367#2 ------------------------------------------------------------
consensus_9367#0 ------------------------------------------
consensus_9367#1 ATTTTATCTGTATAGTAGCTAAATACCTATCTTATAANNTGT 785
consensus_9367#2 ------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||