cluster # 9371

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Schistosoma mansoni
cluster # 9371 cluster # 9371 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9371#0 length = 733 sequences # 6

consensus_9371#1 length = 375 sequences # 2
consensus_9371#2 length = 134 sequences # 1

consensusID : consensus_9371#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 733
fasta sequence

                              [TTGTCCATTTATGCATGCCTTCAAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGTGTTGGGCTTGCTCAAGTTATCCGCTTCCCCCGT-CGTCGACACATTGATGGCAGGTTTCCCAGGTTCACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCATGTAGACCAAAATGGACTCCATGGCCGGGTGTGACTTCTTCCCACTCATGAGTAGGGACAAAATCACTAGAATTTTTTGTGTATGACGTCACTATGAGCAGAAACACCACAATTAAAACCCATATGGTCTCCACCTAAAGGTGCAAAGTGAGGTGTGACGTTGCGGTGCACACAGCTGAGACAGCGTAGGTGAAAACAC]

[+] EMBL BG932472             [TTGTCCATTTATGCATGCCTTCAAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGTGTTGGGCTTGCTCAAGTTATCCGCTTCCCCCGT CG                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD120392             [                                 AACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTT                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD120450             [                                 AACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGCCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCGTGTTTATTTTCTGGAAGTCTTTTTT                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD120074             [                                  ACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTCTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTC                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD120257             [                                  ACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTC                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD141809             [                                                                                                                                                                                                                                                                                                                           ATATTCATGTTTATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGTGTTGGGCTTGCTCAAGTTATCCGC TCCCGAATATGTCGACACATTGATGGCAGGTTTCCCAGGTTCACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCATGTAGACCAAAATGGACTCCATGGCCGGGTGTGACTTCTTCCCACTCATGAGTAGGGACAAAATCACTAGAATTTTTTGTGTATGACGTCACTATGAGCAGAAACACCACAATTAAAACCCATATGGTCTCCACCTAAAGGTGCAAAGTGAGGTGTGACGTTGCGGTGCACACAGCTGAGACAGCGTAGGTGAAAACAC]




>consensus_9371#0
TTGTCCATTTATGCATGCCTTCAAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGT
GCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCT
TTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTG
GAGAAAATCCTTGCATTGTCAATCTGGTGCAGGTAGTAAGACAGATCTTCCAAATATATC
GCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATT
TCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTTCAATTCGTCATAT
GAACGAAAGTGTCTGGCTGACTGAGTGTTGGGCTTGCTCAAGTTATCCGCTTCCCCCGTC
GTCGACACATTGATGGCAGGTTTCCCAGGTTCACCTGCAATTACATTGGAAGGGCTAGAC
ATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCATGTAGA
CCAAAATGGACTCCATGGCCGGGTGTGACTTCTTCCCACTCATGAGTAGGGACAAAATCA
CTAGAATTTTTTGTGTATGACGTCACTATGAGCAGAAACACCACAATTAAAACCCATATG
GTCTCCACCTAAAGGTGCAAAGTGAGGTGTGACGTTGCGGTGCACACAGCTGAGACAGCG
TAGGTGAAAACAC

consensusID : consensus_9371#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 375
fasta sequence

                              [ACACCTGTACGCCTTCATAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTGGTGCAGGTAGTAAGACAG-ATCTTCC-AAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTT]

[+] EMBL CD170011             [ACACCTGTACGCCTTCATAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTGGTGCAGGTAGTAAGACAG ATCTTCC AAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTTCTGGAAGTCTTTTTT]
[+] EMBL CD092329             [                                                                                                                                        TGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTGGTGCAGGTAGTAAGACAGAATCTTCCAAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTTTATTTCAGTCATTATATCATTTAAAATTTCGGGATCCGTCTTGATATTCATGTTTACTTTCTGGAAGTCTTTTTT]




>consensus_9371#1
ACACCTGTACGCCTTCATAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAGTGCGAC
TACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATCTTTTTT
AACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTTGGAGAA
AATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTGGTGCAG
GTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATTCTGTTT
TATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTTTATTTT
CTGGAAGTCTTTTTT

consensusID : consensus_9371#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [TGATGGCAGGTTTCCCAGGTTCACCTACTGACTCAACAGTACACATAACTAACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCAT]

[+] EMBL CD136438             [TGATGGCAGGTTTCCCAGGTTCACCTACTGACTCAACAGTACACATAACTAACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTCGCAT]




>consensus_9371#2
TGATGGCAGGTTTCCCAGGTTCACCTACTGACTCAACAGTACACATAACTAACCTGCAAT
TACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAA
GTTTTGTCTCGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9371#0      TTGTCCATTTATGCATGCCTTCA-AAAAGAATGTAACTGGTCAACCAAACCACTTTGAAG 59
consensus_9371#1      ------ACACCTGTACGCCTTCATAAAAGAATGTAACTGGTCAACCAAACCACTTTGAAG 54
consensus_9371#2      -----------------------------------------TGATGGCAGGTTTCCCAGG 19
                                                                 *    *    *   * *

consensus_9371#0      TGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATC 119
consensus_9371#1      TGCGACTACTTTGACTTCAGAATTTCCCTGAGTAGCGGCACCAATGGCTTTCAAAGTATC 114
consensus_9371#2      TTCACCTAC--TGACTCAACAGTACACATAACTAAC--CTGCAATTACATTGGAAGGGC- 74
                      * *  ****  *****  * * *   * * * ** *  *  ****  * **  ***    

consensus_9371#0      TTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTT 179
consensus_9371#1      TTTTTTAACTTCATAACTGGGATGGTGTAAAAGCTGTAACAGTGTTTCGAAACCATTTTT 174
consensus_9371#2      ----TAGACATCACACCCATATGTTTAGCCTCTCTGTACCGGGTCTTCAAGTTTTGTCTC 130
                          *  ** *** * *        *       ***** * *   *** *      * * 

consensus_9371#0      GGAGAAAATCCTTGCATTGTCAATCTG--------------------------------- 206
consensus_9371#1      GGAGAAAATCCTTGCATTGTCAATCTGTGAGTAGAAAAGGCCGGATTACAGCTGTACCTG 234
consensus_9371#2      GCAT-------------------------------------------------------- 134
                      * *                                                         

consensus_9371#0      GTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATT 266
consensus_9371#1      GTGCAGGTAGTAAGACAGATCTTCCAAATATATCGCTAACCGTTCGTCTGAGGAATCATT 294
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      CTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTT 326
consensus_9371#1      CTGTTTTATTTCAGTCATTATTTCATTTATAATTTCGGGATCCGTCTTGATATTCATGTT 354
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      TATTTTCTGGAAGTCTTTTTTCAATTCGTCATATGAACGAAAGTGTCTGGCTGACTGAGT 386
consensus_9371#1      TATTTTCTGGAAGTCTTTTTT--------------------------------------- 375
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GTTGGGCTTGCTCAAGTTATCCGCTTCCCCCGTCGTCGACACATTGATGGCAGGTTTCCC 446
consensus_9371#1      ------------------------------------------------------------
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      AGGTTCACCTGCAATTACATTGGAAGGGCTAGACATCACACCCATATGTTTAGCCTCTCT 506
consensus_9371#1      ------------------------------------------------------------
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GTACCGGGTCTTCAAGTTTTGTCTCGCATGTAGACCAAAATGGACTCCATGGCCGGGTGT 566
consensus_9371#1      ------------------------------------------------------------
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GACTTCTTCCCACTCATGAGTAGGGACAAAATCACTAGAATTTTTTGTGTATGACGTCAC 626
consensus_9371#1      ------------------------------------------------------------
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      TATGAGCAGAAACACCACAATTAAAACCCATATGGTCTCCACCTAAAGGTGCAAAGTGAG 686
consensus_9371#1      ------------------------------------------------------------
consensus_9371#2      ------------------------------------------------------------
                                                                                  

consensus_9371#0      GTGTGACGTTGCGGTGCACACAGCTGAGACAGCGTAGGTGAAAACAC 733
consensus_9371#1      -----------------------------------------------
consensus_9371#2      -----------------------------------------------