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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1384 fasta sequence
[AGCTGCAGCAACAATGGCTGCTATGGCCGCTATGACTGGACCAACTCAAGATATGACCTCGTTTGGTCAAACTGTGGCTTCTGTGTCTTATTCTGATTCTAAACCGCAAGTGTCCGCTACACATTTAGGAATACAAGAATATCCAGTTATTTGGCGAGGACGTCTTTCCCTGAAAAATGAAGAGGTTTTTGTTAATATGCATTATGTTAGTGGGAATCAAGATCTATTGAAAAGCTGTATGTGTGTTATAACAGAACAACAAGTAGCTCTTAGCAACATTGCTACAAGTTCTAGTTCGTTGGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA-TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAACAGTATGACCGTGATGCATTTAACTCCTGATTTGTTTCCTCAGTGGGTTTTGAAATGTCCTTTTATCACTTCGTTCAATATAATGGACCAAGTTTAATTCCGATAAATGTACTAATCAACGGGTATCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGAACTTATGGCAGCCAATAAGCTTGAAGTAAATCCTTCTCTGAAATTATTTGTTCCCTGGCATCATCCATGTTTATTATGTTTAGTCTGCCTGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCCCGAATTTTCGCCTAATAAGGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTATATGTTTGTGTGTGTCCATGATCCCTTCACCTTATTTGAGGCAGCTTAAACCAATAATTTTTGATATATTGTGTATGTACATACCTATGTTTTCCACATATTGATTTGTTTTAAATGAACAACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATATTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTAACTAATT]
[+] EMBL CD078843 [AGCTGCAGCAACAATGGCTGCTATGGCCGCTATGACTGGACCAACTCAAGATATGACCTCGTTTGGTCAAACTGTGGCTTCTGTGTCTTATTCTGATTCTAAACCGCAAGTGTCCGCTACACATTTAGGAATACAAGAATATCCAGTTATTTGGCGAGGACGTCTTTCCCTGAAAAATGAAGAGGTTTTTGTTAATATGCATTATGTTAGTGGGAATCAAGATCTATTGAAAAGCTGTATGTGTGTTATAACAGAACAACAAGTAGCTCTTAGCAACATTGCTACAAGTTCTAGTTCGTTGGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCANATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCNACANAATCTGTATGTCATCCATA ]
[-] EMBL CD201420 [ TTAGCAACATTGCTACAAGTTCTAGTTCGTTGGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAACAGTATGACCGTGATGCATTTAACTCCTGA ]
[+] EMBL CD187206 [ TTGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAACGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCAC ]
[-] EMBL CD187514 [ TGGGCCTCCACACCATCCTTTAAGGATTGTTCAACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACA ]
[-] EMBL CD187163 [ CATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAA TAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACA ]
[+] EMBL CD084406 [ gAGGGGAAATTAAGACAAANTAAATGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATTGAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCTTGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAAC AAATCTGTATGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCCTGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAACAGTATGACCGTGATGCATTTAACTCCTGATTTGTTTCCTCAGTGGGTTTTGAAATGTCCTTTTATCACTTCGTTCAATATAATGGACCAAGTTTAATTCCGATAAATGTACTAATCAACGGGTATCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGAACTTATGGCA ]
[-] EMBL CD073304 [ TCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGACCTTATGGCAGCCAATAAGCTTGAAGTAAATCCTTCTCTGAAATTATTTGTTCCCTGGCATCATCCATGTTTATTATGTTTAGTCTGCCTGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCCCGAATTTTCGCCTAATAAGGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTATATGTTTGTGTGTGTCCATGATCCCTTCACCTTATTTGAGGCAGCTTAAACCAATAATTTTTGATATATTGTGTATGTACATACCTATGTTTTCCACATATTGATTTGTTTTAAATGAACAACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATATTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTAACTA ]
[-] EMBL AI974980 [ TGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCCCGAATTTTCGCCTAATAAGGATAAATAAAATTTTAATTGCCTGTCC AAGTTACGCACTGTGATTCTCTATTTAACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTATATGTTTGTGTGTGTCCATGATCCCTTCCCCTCATTTGAGGCAGCTTAAACCAATAATTTTTGATAAATTGTGTATGTACACACCTATGTTTTCCACATATTGATTTGTTTTAAATGAACAACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATATTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTACCTAATT]
consensusID : consensus_9377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence
[CTACAATTAAAAGACTATATATTATGCCCGAATTTTCGCCTAATAAGAGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAATGTCACTGATTGTATATATAGTGTAATGCTTCGTGTGTGTCCA]
[-] EMBL CD061966 [CTACAATTAAAAGACTATATATTATGCCCGAATTTTCGCCTAATAAGAGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACTGTGATTCTCTATTTTACTTGACCTTATTTTCAAATGTCACTGATTGTATATATAGTGTAATGCTTCGTGTGTGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9377#0 AGCTGCAGCAACAATGGCTGCTATGGCCGCTATGACTGGACCAACTCAAGATATGACCTC 60
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 GTTTGGTCAAACTGTGGCTTCTGTGTCTTATTCTGATTCTAAACCGCAAGTGTCCGCTAC 120
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 ACATTTAGGAATACAAGAATATCCAGTTATTTGGCGAGGACGTCTTTCCCTGAAAAATGA 180
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 AGAGGTTTTTGTTAATATGCATTATGTTAGTGGGAATCAAGATCTATTGAAAAGCTGTAT 240
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 GTGTGTTATAACAGAACAACAAGTAGCTCTTAGCAACATTGCTACAAGTTCTAGTTCGTT 300
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 GGGGTCGTGCATGACTGGGGATGCTATTGGGCCTCCACACCATCCTTTAAGGATTGTTCA 360
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 ACGAATGCGTTTAGAAGCATCTCAACTTGAAGGGGTTCAGAGGAAATTAAGACAAATAAA 420
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 TGATTTTTGTATGTGCCTTACCCTAGCATCTGCTCCTCTACTAACCCCTGATGCTTCATT 480
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 GAATAATGAACAAATACGGATGAACAGAATACTGTGTGATGGATTTATCAAATACATGCT 540
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 TGAAAAGGGTGCCGCTGGAATAATAAATGTTTGTCATCCATGCACTCAACAAAATCTGTA 600
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 TGTCATCCATATATTTCCTCCCTGTGAATTTTCACGTTGCCAGTTACAAGCATGTGCTCC 660
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 TGCCCTTTATCACAGTTTAGCGGAAAATTCCATACCTCACGTATTAACTGTGATCACAAC 720
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 AGTATGACCGTGATGCATTTAACTCCTGATTTGTTTCCTCAGTGGGTTTTGAAATGTCCT 780
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 TTTATCACTTCGTTCAATATAATGGACCAAGTTTAATTCCGATAAATGTACTAATCAACG 840
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 GGTATCTCAGTTAGTGCCTGTCTATCGAAATCTATATTTCTCTTCTCTCAGAACTTATGG 900
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 CAGCCAATAAGCTTGAAGTAAATCCTTCTCTGAAATTATTTGTTCCCTGGCATCATCCAT 960
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 GTTTATTATGTTTAGTCTGCCTGTTTCTTGGTTTGAGTAGCATAATGCAAATATTCTGCC 1020
consensus_9377#1 ------------------------------CTACAATTAAAAGACTAT--ATATTATGCC 28
* * ** * * * ***** ****
consensus_9377#0 CGAATTTTCGCCTAATAAG-GATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACT 1079
consensus_9377#1 CGAATTTTCGCCTAATAAGAGATAAATAAAATTTTAATTGCCTGTCCAAAGTTACGCACT 88
******************* ****************************************
consensus_9377#0 GTGATTCTCTATTTTACTTGACCTTATTTTCAAAATGTCACTGATTGTATATATAGTGTA 1139
consensus_9377#1 GTGATTCTCTATTTTACTTGACCTTATTTTCAAA-TGTCACTGATTGTATATATAGTGTA 147
********************************** *************************
consensus_9377#0 TATGTTTGTGTGTGTCCATGATCCCTTCACCTTATTTGAGGCAGCTTAAACCAATAATTT 1199
consensus_9377#1 ATGCTTCGTGTGTGTCCA------------------------------------------ 165
** ***********
consensus_9377#0 TTGATATATTGTGTATGTACATACCTATGTTTTCCACATATTGATTTGTTTTAAATGAAC 1259
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 AACAAGCCCATGTATATATGTTCAGTGGCGTGACTAGTCAGATTGTTTTTAAATGATATA 1319
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 TTCATTCGGATTATATATTTTACTTTGTTGCTTTTTAATGGCTAAAAATTAAATATTAAC 1379
consensus_9377#1 ------------------------------------------------------------
consensus_9377#0 TAATT 1384
consensus_9377#1 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||