These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 968 fasta sequence [TGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAATTGAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCTCACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAACGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTTTCTAACTGGGCAGGTGAAACAAAGATTATCGTTAAATGTCTCTATACCAAAACACAGTAAAAGTTTCAGTGACTATTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA-GAAGCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA] [+] EMBL CD088585 [TGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAATTGAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCTCACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAACGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTTTCTAACTGGGCAGGTGAAACAAAGATTATCGTTAAATGTCTCTATACCAAAACACAGTAAAAGTTTCAGTGACTATTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTANAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCANATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACANGAGNNCAC ACAGTAATGTATTTTTTAGATAGCCG ] [+] EMBL CD098495 [TGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAATTGAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCTCACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAACGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTCTCTAACTGGGCAGGTGAAACA ] [-] EMBL CD098492 [ AAGTTTCAGTGACTATTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA GAAGCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA] [-] EMBL CD088502 [ GACACGATAGTGGAACACGTNTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA GAAGCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTACCTCCGGAGGTAAGGCCTTTAAACTACGGATCCCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCTATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA] [-] EMBL CD088500 [ ACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA GAAGCAACANCAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA] consensusID : consensus_9386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 916 fasta sequence [TAATTTATTATTTACTCATTTAAATTAATAAAAACTGAACGAAAAAAAATATAAAAAAAAGTTTCATACCAAAAGAAAATAATCGTTACTATGGAATTTTATGAGAAAAAAATTACAAAAACAAAAACATAAATGCTGATCTTGTTAAGAATTGGTTCACAAACAAGGATGAAACGATGATTATCACTGATCATCAAGACACGATGTAGTAAACGAGGATGATGATGATGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCT-AAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTGATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATATTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCANATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAATANATTTGGATATTCTCGACGGATTGCCCAAATTNTATCAACTAATTGATCTANATGTGTATCAGATAATACATTTGCAAAACCTTTAGATTTTTGTAAAATTATATTG] [+] EMBL CD077050 [TAATTTATTATTTACTCATTTAAATTAATAAAAACTGAACGAAAAAAAATATAAAAAAAAGTTTCATACCAAAAGAAAATAATCGTTACTATGGAATTTTATGAGAAAAAAATTACAAAAACAAAAACATAAATGCTGATCTTGTTAAGAATTGGTTCACAAACAAGGATGAAACGATGATTATCACTGATCATCAAGACACGATGTAGTAAACGAGGATGATGATGATGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCT AAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGT GTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATA ] [+] EMBL CD096649 [ TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCT AAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTGATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATATTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCANATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAATANATTTGGATATTCTCGACGGATTGCCCAAATTNTATCAACTAATTGATCTANAT ] [-] EMBL CD096493 [ GATGTTGAGGATGACGAAGACTTGTTCGATGATAGAA TTCATCTAAAGATTGGAATAGGTGAGTNNTCTGATAANTTAGGCAATAAAGATGTGTAATGTGATATCTTNTGTAAACTATTNTGTAATTTTTCATTAGCTTNTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTCAGATAATTGAATATTGAATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTGATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATATTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCAAATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAATAAATTTGGATATTCTTGACGGATTGCCAAAATTTTATCAACTAATTGATCTAAATGTGTATCAGATAATACATTTGCAAAACCTTTAGATTTTTGTAAAATTATATTG] consensusID : consensus_9386#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence [TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAAACTAATACCAGCCTATAGACTAAGAAACAATGCATATACACTAT] [+] EMBL CD096315 [TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAAACTAATACCAGCCTATAGACTAAGAAACAATGCATATACACTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9386#1 TAATTTATTATTTACTCATTTAAATTAATAAAAACTGAACGAAAAAAAATATAAAAAAAA 60 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 ------------------------------------------------------------ consensus_9386#1 GTTTCATACCAAAAGAAAATAATCGTTACTATGGAATTTTATGAGAAAAAAATTACAAAA 120 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 ------------------------------------------------------------ consensus_9386#1 ACAAAAACATAAATGCTGATCTTGTTAAGAATTGGTTCACAAACAAGGATGAAACGATGA 180 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 ------------------------------------------------------------ consensus_9386#1 TTATCACTGATCATCAAGACACGATGTAGTAAACGAGGATGATGATGATGATGGTGTCTT 240 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 ------------------------------------------------TGATGGTGTCTT 12 consensus_9386#1 TGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATC 300 consensus_9386#2 ---------------TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATC 45 consensus_9386#0 TGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATC 72 ********************************************* consensus_9386#1 TAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATAT 360 consensus_9386#2 TAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATAT 105 consensus_9386#0 TAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAAT-T 131 *************************************************** ** ** * consensus_9386#1 CTTTTGTAAACTATTTTGTAATTTTTCA------------TTAGCTTTTATTAATCTTTT 408 consensus_9386#2 CTTTTGTAAACTATTTTGTAATTTTTCA------------TTAGCTTTTATTAATCTTTT 153 consensus_9386#0 GAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCT 191 **** ** * *** **** * * * * * ** *** * consensus_9386#1 ----TAAATTATTTACACCTTTATAA-ATAGTATCAAAATATTGTG--TAGTAGTAGTAG 461 consensus_9386#2 ----TAAATTATTTACACCTTTATAA-ATAGTATCAAAATATTGTG--TAGTAGTAGTAG 206 consensus_9386#0 CACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAA 251 **** *** *** ** * * * * **** ** * * * * consensus_9386#1 TAGTATATTGTTGTTGTTGTTGTTGTACAATA---------TTTTCTTGATTAGATAA-T 511 consensus_9386#2 TAGTATATTGTTGTTGTTGTTGTTGTACAATA---------TTTTCTTGATTAGATAA-T 256 consensus_9386#0 CGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTTTCTAACTGGGCAGGT 311 *** ** ** * * * * *** * * ** * * * * * * consensus_9386#1 GGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGA---TAATTGAATA 568 consensus_9386#2 GGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGA---TAATTGAATA 313 consensus_9386#0 GAAACAAAGATTATCGTTAAATGTCTCTATACCAAAACACAGTAAAAGTTTCAGTGACTA 371 * * * ** *** ****** * * ** ** * * * * * * *** ** consensus_9386#1 TTGA-ATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTG 627 consensus_9386#2 TTGA-ATTGTTTAAA---CTAATACCAGCCT---ATAGACTAAGAAACAATG-CATATAC 365 consensus_9386#0 TTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGG-TATGTTG 430 **** * * * * * * * * * ** * consensus_9386#1 ATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATA 687 consensus_9386#2 ACTAT------------------------------------------------------- 370 consensus_9386#0 ACTAAAACACCTATTCC-TTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTA 489 * * consensus_9386#1 TTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCAN 747 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 AGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACAGAA 549 consensus_9386#1 ATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAA 807 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 GCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTT 609 consensus_9386#1 TANATTTGGATATTCTCGACGGATTGCCCA-AATTNTATCAACTAATTGATCTANATGTG 866 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 AAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACG 669 consensus_9386#1 TATCAGATAATACATTTGCAAAACCTTTAGATTTTTGTAAAATTATATTG---------- 916 consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 GATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGA 729 consensus_9386#1 ------------------------------------------------------------ consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 ATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAA 789 consensus_9386#1 ------------------------------------------------------------ consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 GTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAA 849 consensus_9386#1 ------------------------------------------------------------ consensus_9386#2 ------------------------------------------------------------ consensus_9386#0 CGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCA 909 consensus_9386#1 ----------------------------------------------------------- consensus_9386#2 ----------------------------------------------------------- consensus_9386#0 CTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA 968 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||