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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 968 fasta sequence
[TGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAATTGAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCTCACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAACGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTTTCTAACTGGGCAGGTGAAACAAAGATTATCGTTAAATGTCTCTATACCAAAACACAGTAAAAGTTTCAGTGACTATTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA-GAAGCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA]
[+] EMBL CD088585 [TGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAATTGAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCTCACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAACGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTTTCTAACTGGGCAGGTGAAACAAAGATTATCGTTAAATGTCTCTATACCAAAACACAGTAAAAGTTTCAGTGACTATTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTANAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCANATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACANGAGNNCAC ACAGTAATGTATTTTTTAGATAGCCG ]
[+] EMBL CD098495 [TGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAATTGAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCTCACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAACGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTCTCTAACTGGGCAGGTGAAACA ]
[-] EMBL CD098492 [ AAGTTTCAGTGACTATTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA GAAGCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA]
[-] EMBL CD088502 [ GACACGATAGTGGAACACGTNTGTTGTGATGACCTAATTGAGGTATGTTGACTAAAACACCTATTCCTTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA GAAGCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTACCTCCGGAGGTAAGGCCTTTAAACTACGGATCCCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCTATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA]
[-] EMBL CD088500 [ ACCAACTAGATCGGTCGGAGAACGGTAAGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACA GAAGCAACANCAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTTAAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACGGATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGAATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAAGTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAACGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCACTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA]
consensusID : consensus_9386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 916 fasta sequence
[TAATTTATTATTTACTCATTTAAATTAATAAAAACTGAACGAAAAAAAATATAAAAAAAAGTTTCATACCAAAAGAAAATAATCGTTACTATGGAATTTTATGAGAAAAAAATTACAAAAACAAAAACATAAATGCTGATCTTGTTAAGAATTGGTTCACAAACAAGGATGAAACGATGATTATCACTGATCATCAAGACACGATGTAGTAAACGAGGATGATGATGATGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCT-AAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTGATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATATTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCANATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAATANATTTGGATATTCTCGACGGATTGCCCAAATTNTATCAACTAATTGATCTANATGTGTATCAGATAATACATTTGCAAAACCTTTAGATTTTTGTAAAATTATATTG]
[+] EMBL CD077050 [TAATTTATTATTTACTCATTTAAATTAATAAAAACTGAACGAAAAAAAATATAAAAAAAAGTTTCATACCAAAAGAAAATAATCGTTACTATGGAATTTTATGAGAAAAAAATTACAAAAACAAAAACATAAATGCTGATCTTGTTAAGAATTGGTTCACAAACAAGGATGAAACGATGATTATCACTGATCATCAAGACACGATGTAGTAAACGAGGATGATGATGATGATGGTGTCTTTGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCT AAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGT GTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATA ]
[+] EMBL CD096649 [ TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCT AAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTGATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATATTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCANATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAATANATTTGGATATTCTCGACGGATTGCCCAAATTNTATCAACTAATTGATCTANAT ]
[-] EMBL CD096493 [ GATGTTGAGGATGACGAAGACTTGTTCGATGATAGAA TTCATCTAAAGATTGGAATAGGTGAGTNNTCTGATAANTTAGGCAATAAAGATGTGTAATGTGATATCTTNTGTAAACTATTNTGTAATTTTTCATTAGCTTNTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTCAGATAATTGAATATTGAATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTGATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATATTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCAAATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAATAAATTTGGATATTCTTGACGGATTGCCAAAATTTTATCAACTAATTGATCTAAATGTGTATCAGATAATACATTTGCAAAACCTTTAGATTTTTGTAAAATTATATTG]
consensusID : consensus_9386#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAAACTAATACCAGCCTATAGACTAAGAAACAATGCATATACACTAT]
[+] EMBL CD096315 [TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATCTAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATATCTTTTGTAAACTATTTTGTAATTTTTCATTAGCTTTTATTAATCTTTTTAAATTATTTACACCTTTATAAATAGTATCAAAATATTGTGTAGTAGTAGTAGTAGTATATTGTTGTTGTTGTTGTTGTACAATATTTTCTTGATTAGATAATGGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGATAATTGAATATTGAATTGTTTAAACTAATACCAGCCTATAGACTAAGAAACAATGCATATACACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9386#1 TAATTTATTATTTACTCATTTAAATTAATAAAAACTGAACGAAAAAAAATATAAAAAAAA 60
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 ------------------------------------------------------------
consensus_9386#1 GTTTCATACCAAAAGAAAATAATCGTTACTATGGAATTTTATGAGAAAAAAATTACAAAA 120
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 ------------------------------------------------------------
consensus_9386#1 ACAAAAACATAAATGCTGATCTTGTTAAGAATTGGTTCACAAACAAGGATGAAACGATGA 180
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 ------------------------------------------------------------
consensus_9386#1 TTATCACTGATCATCAAGACACGATGTAGTAAACGAGGATGATGATGATGATGGTGTCTT 240
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 ------------------------------------------------TGATGGTGTCTT 12
consensus_9386#1 TGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATC 300
consensus_9386#2 ---------------TGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATC 45
consensus_9386#0 TGGTGCTAGTGTTCATGATGTTGAGGATGACGAAGACTTGTTCGATGATAGAATTTCATC 72
*********************************************
consensus_9386#1 TAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATAT 360
consensus_9386#2 TAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTAATGTGATAT 105
consensus_9386#0 TAAGATTGGAATAGTTGAGTTTTCTGATAAATTAGGCAATAAAGATGTGTACTGAAAT-T 131
*************************************************** ** ** *
consensus_9386#1 CTTTTGTAAACTATTTTGTAATTTTTCA------------TTAGCTTTTATTAATCTTTT 408
consensus_9386#2 CTTTTGTAAACTATTTTGTAATTTTTCA------------TTAGCTTTTATTAATCTTTT 153
consensus_9386#0 GAAAAATAAAATAAAACGAGATTGTTCACACAAAAAACGATATGATATAACTACCCTTCT 191
**** ** * *** **** * * * * * ** *** *
consensus_9386#1 ----TAAATTATTTACACCTTTATAA-ATAGTATCAAAATATTGTG--TAGTAGTAGTAG 461
consensus_9386#2 ----TAAATTATTTACACCTTTATAA-ATAGTATCAAAATATTGTG--TAGTAGTAGTAG 206
consensus_9386#0 CACTTAAAATATCGACATTTTAACAGTAGGATGATGAAATCTTTCAAACAATTTTCTAAA 251
**** *** *** ** * * * * **** ** * * * *
consensus_9386#1 TAGTATATTGTTGTTGTTGTTGTTGTACAATA---------TTTTCTTGATTAGATAA-T 511
consensus_9386#2 TAGTATATTGTTGTTGTTGTTGTTGTACAATA---------TTTTCTTGATTAGATAA-T 256
consensus_9386#0 CGGTACATGTTTACCTCTTATTCTATGCAACACATATATATTGTTTCTAACTGGGCAGGT 311
*** ** ** * * * * *** * * ** * * * * * *
consensus_9386#1 GGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGA---TAATTGAATA 568
consensus_9386#2 GGACAAGAGTTTAATTTTAAATTTGTATAGACTGGTATTAGTTTAGA---TAATTGAATA 313
consensus_9386#0 GAAACAAAGATTATCGTTAAATGTCTCTATACCAAAACACAGTAAAAGTTTCAGTGACTA 371
* * * ** *** ****** * * ** ** * * * * * * *** **
consensus_9386#1 TTGA-ATTGTTTAATTTTCTCAGATGATTCTTTCATTTTTTCAATATCAATATCATGTTG 627
consensus_9386#2 TTGA-ATTGTTTAAA---CTAATACCAGCCT---ATAGACTAAGAAACAATG-CATATAC 365
consensus_9386#0 TTGATACTTGACACGATAGTGGAACACGTTTGTTGTGATGACCTAATTGAGG-TATGTTG 430
**** * * * * * * * * * ** *
consensus_9386#1 ATCAAAATGTGTACACGATTCATCGCACGGAATGTTCGAGATATTTTCTTTATTTTCATA 687
consensus_9386#2 ACTAT------------------------------------------------------- 370
consensus_9386#0 ACTAAAACACCTATTCC-TTAAAGTTCTACAATACCAACTAGATCGGTCGGAGAACGGTA 489
* *
consensus_9386#1 TTCTTCATAATGTTTATTAAGTAAATGACGAATTTTTTGAAATATTTCTTCTACTTTCAN 747
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 AGACTAAAGCTAGCAAATTAAGGCAAGAGGGTAAAGTCCTGCTGCTAACTATATACAGAA 549
consensus_9386#1 ATGAGCTGATTGAACGGTTTCATATTGTGGAATTGTTTCCATCGACTTATCATGATCCAA 807
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 GCAACAACAGTAATGTATTTTTTAGATAGCCGGCATCTACAGAGATGCTGCCTACTTTTT 609
consensus_9386#1 TANATTTGGATATTCTCGACGGATTGCCCA-AATTNTATCAACTAATTGATCTANATGTG 866
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 AAGAAAGGGAAGAACAGAAAATATTGGCAACAAAAATGTCAAATCTCATCTTACTTCACG 669
consensus_9386#1 TATCAGATAATACATTTGCAAAACCTTTAGATTTTTGTAAAATTATATTG---------- 916
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 GATTTCTATCTCCGGAGGTAAGGCCTTTAAACTACGGATCTCACACATCAGAAACATGGA 729
consensus_9386#1 ------------------------------------------------------------
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 ATAATAATGTGTAGTCGGCCTTAAGCAACTGGCCACAAGGATCTGAAGTCACATCCCCAA 789
consensus_9386#1 ------------------------------------------------------------
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 GTGATTAAGACTACTCCTTAACAAGTTTTCTTTCCATGCCCCTCTAGATGTATCATTCAA 849
consensus_9386#1 ------------------------------------------------------------
consensus_9386#2 ------------------------------------------------------------
consensus_9386#0 CGGTGTAGGCAGCCGGAGTGAGAACCCCTTTCACATCTCTAACATCATTACTTTAGACCA 909
consensus_9386#1 -----------------------------------------------------------
consensus_9386#2 -----------------------------------------------------------
consensus_9386#0 CTTTGTTCATGATCAAATTGCCAAGTCAGTTTTTGTCGTTGTATCATTCACGGTATCAA 968
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||