cluster # 9387

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Schistosoma mansoni
cluster # 9387 cluster # 9387 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9387#0 length = 367 sequences # 8

consensus_9387#1 length = 245 sequences # 1

consensusID : consensus_9387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 367
fasta sequence

                              [TATTTTTNCTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT-AAAGAGGTT-AAGG-AATTCGTTGG-AAAAATTGATGACAACTCGGATGGTC-AAATTAGTTTGGAANAACTGACCAAAGCTTTG-TCAGG-AAATTTAGACATT-GCC-AAAGCGTGTCATCTAAAGCCACG-ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATAGACATGTTTAAAAAAA]

[+] EMBL AA559441             [TATTTTTNCTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT AAAGAGGTT AAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAANAACTGACCAAAGCTTTG TCNGG AAATTTAGACATT GCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATNCATAAAATTCAGATTTTTAATTAC                                                           ]
[+] EMBL AA559454             [        CTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT AAAGAGGTT AAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAANAACTGACCAAAGCTTTG TCAGG AAATTTAGACATT GCC AAAGCGTGTCNTCTAAAGCCNCGAATAAATAATACGAAGTCTTATNTNCCTA                                                                               ]
[+] EMBL AA559419             [         TCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT AAAGAGGTT AAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAANAACTGACCAAAGCTTTG TCAGG AAATTTAGACATT GCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATNCAGA                                                                      ]
[+] EMBL AA883025             [              GCCAATGTCAATTGCTGACATTACTGTGTTATTCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCATAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCTACTAAATATAACTGT  AAGAGGTT AAGG AATTCGTTGG  AAAATTGta                                                                                                                                                                                                             ]
[+] EMBL AA559572             [                 AATGTCAATTGCTGACNTTACTGAGTTATNCGGAAAACTTGACAAAAATCATAATGGCCTTGTATCACAAAAAGAAATNAAANCTTANCT                                                                                                                                                                                                                                                                              ]
[-] EMBL AA999485             [                                                                                                                      tccCTAAATATAACTGTAAAAGAGGTTAAAGG AATTCGTTGG AAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAAGAACTGACCAAAGCTTTG TCAGG AAATTTAGACATT GCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATA                ]
[-] EMBL AA917193             [                                                                                                                           tAATAT ACTGT AAAGAGGTT AAGGAAATTCGTTGG  AAAATTG TGACCACTCGGATGGTCAAAATTAGTTTGGAAGAACTGACCAAA CTTTG TCAGG AAATTTAGACATT GCCAAAACCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATAGACATGTTTAAAAAAA]
[+] EMBL AA559749             [                                                                                                                                                       AATTCGTTGGAAAAAATTGATGACAACTCGGATGGTC AAATTAGTTTGGAAGAACTGACCAAAGCTTTGNTCAGGAAAATTTAGACATTGGCC AAAGCGTGTCATCTAAAGCCACG ATAAATAATACGAAGTCTTATATACATAAAATTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATA                ]




>consensus_9387#0
TATTTTTNCTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGAC
AAAAATCATAATGGCCTTGTATCACAAAAAGAAATTAAAGCTTATCTGAGGTCAAATTCT
ACTAAATATAACTGTAAAGAGGTTAAGGAATTCGTTGGAAAAATTGATGACAACTCGGAT
GGTCAAATTAGTTTGGAANAACTGACCAAAGCTTTGTCAGGAAATTTAGACATTGCCAAA
GCGTGTCATCTAAAGCCACGATAAATAATACGAAGTCTTATATACATAAAATTCAGATTT
TTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATAGACATGTTT
AAAAAAA

consensusID : consensus_9387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [GGAACTTGACAAATCATAACTTGGCCTTCGTATCACAAAAAGAAATTAAAGCCTTATCTGAGGTCAAATTCTACTAAATAATAACTGTAAAGAGGTTAAGGAATTCCGTTGGAACACATTGATGACCAACTCGGATCGGTCAAATTAGTTTGGAAGACTGACCAAAGCCTTGTCAGGAAATTTGACATTGCCAAAGTCCGTTTCATCTAAGCCACGACAATATACGAGTCCTTATATTCCTTAAA]

[+] EMBL AA952813             [GGAACTTGACAAATCATAACTTGGCCTTCGTATCACAAAAAGAAATTAAAGCCTTATCTGAGGTCAAATTCTACTAAATAATAACTGTAAAGAGGTTAAGGAATTCCGTTGGAACACATTGATGACCAACTCGGATCGGTCAAATTAGTTTGGAAGACTGACCAAAGCCTTGTCAGGAAATTTGACATTGCCAAAGTCCGTTTCATCTAAGCCACGACAATATACGAGTCCTTATATTCCTTAAA]




>consensus_9387#1
GGAACTTGACAAATCATAACTTGGCCTTCGTATCACAAAAAGAAATTAAAGCCTTATCTG
AGGTCAAATTCTACTAAATAATAACTGTAAAGAGGTTAAGGAATTCCGTTGGAACACATT
GATGACCAACTCGGATCGGTCAAATTAGTTTGGAAGACTGACCAAAGCCTTGTCAGGAAA
TTTGACATTGCCAAAGTCCGTTTCATCTAAGCCACGACAATATACGAGTCCTTATATTCC
TTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9387#0      TATTTTTNCTCAAAGCCAATGTCAATTGCTGACATTACTGAGTTATTCGGAAAACTTGAC 60
consensus_9387#1      --------------------------------------------------GGAACTTGAC 10
                                                                          ********

consensus_9387#0      AAAAATCATAATGGCCTT-GTATCACAAAAAGAAATTAAAGC-TTATCTGAGGTCAAATT 118
consensus_9387#1      AAATCATAACTTGGCCTTCGTATCACAAAAAGAAATTAAAGCCTTATCTGAGGTCAAATT 70
                      ***    *   ******* *********************** *****************

consensus_9387#0      CTACTAAATA-TAACTGTAAAGAGGTTAAGGAATTC-GTTGGAAAA-ATTGATGAC-AAC 174
consensus_9387#1      CTACTAAATAATAACTGTAAAGAGGTTAAGGAATTCCGTTGGAACACATTGATGACCAAC 130
                      ********** ************************* ******* * ********* ***

consensus_9387#0      TCGGAT-GGTCAAATTAGTTTGGAANAACTGACCAAAGCTTTGTCAGGAAATTTAGACAT 233
consensus_9387#1      TCGGATCGGTCAAATTAGTTTGGAAGA-CTGACCAAAGCCTTGTCAGGAAATTT-GACAT 188
                      ****** ****************** * *********** ************** *****

consensus_9387#0      TGCCAAAG--CGTGTCATCTAAAGCCACGATAAATAATACGAAGTCTTATATACATAAAA 291
consensus_9387#1      TGCCAAAGTCCGTTTCATCTAA-GCCACGACAA--TATACGAGTCCTTATATTCCTTAAA 245
                      ********  *** ******** ******* **   ******   ******* * * ***

consensus_9387#0      TTCAGATTTTTAATTACGTTCTTCTTTAAAAACTGTTATTTACTTAATATAGCATATATA 351
consensus_9387#1      ------------------------------------------------------------
                                                                                  

consensus_9387#0      GACATGTTTAAAAAAA 367
consensus_9387#1      ----------------