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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 974 fasta sequence
[AACTAGGATTTATTACATATTTTAACAAGTTAGTAGAGAATCTATTATCGTAATCCATATCAAGTATCTTGAACTTGAATGATTATCTATCACACAGCTACTATTTGGAAGGAGTCTTGTAACCCATGTGAACTGATACGATACCATTTGAATAATTAATCCAATCAACACCATCAAATCCTGATTGTGTAATTATATGCGCGAATTCCTCCTGGTCAGGAAATTTACGAATGCTTTCAACTAAATATTTATATGAATTCCAATCACCTGCAACAAGTTGACCAATTACAGGAATTAATTGCATAGAATATGCATTATATAATTTTCTGAATAAGTTATTTTCAACTTTGCTAAATTCCAAACAGTAAAAACGCCCCCAGGGACGTAGAACTCGATAGGCTTCTGAAACAACCTTTTCAATATGTGTGCAATTGCGTATTCCAAAAGCAATAGTATAAACGTCGAATGAATTATCATTAAATGGGAGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCGCACGTGCTTTCCCTACTTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAGCCATGAGAGGTTTCATATCAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTGTTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAA-ACTCATTATATCATTCATCAAGTCATATTTTTTGGATACGTTCTCAAACACATGATTTACTTTTGATTGTTTATCCTTGGTTTCTACTGTTTCAAA-CCCAAAGTGTGTGGTTGACAGAAAGCTCTTCTGTGCACTCATCAATCGAAACTTACAAAAAGCATTTTGGATGTGGCATGAAAGAACGCTCATCTTCTGAAATACG]
[+] EMBL CD076745 [AACTAGGATTTATTACATATTTTAACAAGTTAGTAGAGAATCTATTATCGTAATCCATATCAAGTATCTTGAACTTGAATGATTATCTATCACACAGCTACTATTTGGAAGGAGTCTTGTAACCCATGTGAACTGATACGATACCATTTGAATAATTAATCCAATCAACACCATCAAATCCTGATTGTGTAATTATATGCGCGAATTCCTCCTGGTCAGGAAATTTACGAATGCTTTCAACTAAATATTTATATGAATTCCAATCACCTGCAACAAGTTGACCAATTACAGGAATTAATTGCATAGAATATGCATTATATAATTTTCTGAATAAGTTATTTTCAACTTTGCTAAATTCCAAACAGTAAAAACGCCCCCAGGGACGTAGAACTCGATAGGCTTCTGAAACAACCTTTTCAATATGTGTGCAATTGCGTATTCCAAAAGCAATAGTATAAACGTCGAATGAATTATCATTAAATGGGAGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCGCACGTGCTTTCCCTACTTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAGCCAT ]
[-] EMBL CD068815 [ CGATACCATTTGAATAATTAATCCAATCAACACCATCAAATCCTGATTGTGTAATTATATGCGCGAATTCCTCCTGGTCAGGAAATTTACGAATGCTTTCAACTAAATATTTATATGAATTCCAATCACCTGCAACAAGTTGACCAATTACAGGAATTAATTGCATAGAATATGCATTATATAATTTTCTGAATAAGTTATTTTCAACTTTGCTAAATTCCAAACAGTAAAAACGCCCCCAGGGACGTAGAACTCGATAGGCTTCTGAAACAACCTTTTCAATATGTGTGCAATTGCGTATTCCAAAAGCAATAGTATAAACGTCGAATGAATTATCATTAAATGGGGGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCGCACATGCTTTCCCTACTTCCATC ]
[-] EMBL CD132976 [ TTACGAATGCTTTCAACTAAATATTTATATGAATTCTAATCACCTGCACCAAGTTGACCAATTACAGGAATTAANTGCATAGAATATGCATTATATAATTTTCTGAATAAGTTATTTTCAACTTTGCTAAATTCCAAACAGTAANAACGCCNCCAGGGACGTAGAACTCGATAGGCTTCTGAAACAACCTTTTCAATATGTGTGCAATTGCGTATTCCAAAAGCAATAGTATAAACGTCGAATGAATTATCATTAAATGGGAGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCGCACGTGCTTTCCCTACTTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAGCCATGAGAGGTTTCATATCAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTGTTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAA ACTCATTATATCATTCATCAAGTCATATTTTTTGGA ]
[-] EMBL CD159533 [ GAATGCTTTCAACTAAATATTTATATGAATTCCAATCACCTGCAACAAGTTGACCAATTACAGGAATTAATTGCATAGAATATGCATTATATAATTTTCTGAGTAAGTTATTTTCAACTTTGCTAAATTCCAAACAGTAAAAACGCCCCCAGGGACGTAGAACTCGATAGGCTTCTGAAACAACCTTTTCAATATGTGTGCAATTGCGTATTCCAAAAGCAATAGTATAAACGTCGAATGAATTATCATTAAATGGGAGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCGCACGTGCTTTCCCTACTTCCATCATGGATGGACTAATAT ]
[-] EMBL CD079270 [ GGGACGTAGAACTCGATAGGCTTCTGAANCAACCTNTTCAATATGTGTGCAATTGCGTATTCCAAAAGCAATAGTATAAACGTCGAATGAATTATCATTAAATGGGAGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCGCACGTGCTTTCCCTACTTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAGCCATGAGAGGTTTCATATCAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTGTTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAA ACTCATTATATCATTCATCAAGTCATATTTTTTGGATACGTTCTCAAACACATGATTTACTTTTGATTGTTTATCCTTGGTTTCTACTGTTTCAAA CCCAAAGTGTGTGGTTGACAGAAAGCTCTTCTGTGCACTCATCAATCGAAACTTACAAAAAGCATTTTGGATGTGGCATGAAAGAACGCTCATCTTCTGAAATACG]
[-] EMBL CD078176 [ AATGGGAGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCGCACGTGCTTTCCCTACTTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAGCCATGAGAGGTTTCATATCAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAAC ]
[-] EMBL CD083172 [ anTGAAATGAAGAAAACCCCAATTCTTCCGCACGTGCTTTCCCTACTTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAGCCATGAGAGGTTTCATATCAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATNTAAGTACTTGAGCTTATCTGTTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAAGACTCATTATATCATTCATCAAGTCATATTTTTTGGATACGTTCTCAAACACATGATTTACTTTTGATTGTTTATCCTTGGTTTCTACAGTTTCAAANCCCAAAGTGTG GGTTGACAGAAAG TCCTC GTGCcg ]
[-] EMBL CD084009 [ TTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAGCCATGAGAGGTTTCATATCAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTGTTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAA ACTCATTATATCATTCATCAAGTCATATTTTTTGGATACGTTCTCAAACACATGATTTACTTTTGATTGTTTATCCTTGGTTTCTACTGTTTCAAA CCCAAAGTGTGTGGTTGACAGAAAGCTCTTCTGTGCACTCATCAATCGAAACTTACAAAAAGCATTTTGGATGTGGCATGAAAGAACGCTCATCTT ]
consensusID : consensus_9389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence
[CAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTGTTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAAACTCATTATATCCCTCGTGCCGAA]
[-] EMBL CD078078 [CAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAATTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTGTTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAAACTCATTATATCCCTCGTGCCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9389#0 AACTAGGATTTATTACATATTTTAACAAGTTAGTAGAGAATCTATTATCGTAATCCATAT 60
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 CAAGTATCTTGAACTTGAATGATTATCTATCACACAGCTACTATTTGGAAGGAGTCTTGT 120
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 AACCCATGTGAACTGATACGATACCATTTGAATAATTAATCCAATCAACACCATCAAATC 180
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 CTGATTGTGTAATTATATGCGCGAATTCCTCCTGGTCAGGAAATTTACGAATGCTTTCAA 240
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 CTAAATATTTATATGAATTCCAATCACCTGCAACAAGTTGACCAATTACAGGAATTAATT 300
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 GCATAGAATATGCATTATATAATTTTCTGAATAAGTTATTTTCAACTTTGCTAAATTCCA 360
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 AACAGTAAAAACGCCCCCAGGGACGTAGAACTCGATAGGCTTCTGAAACAACCTTTTCAA 420
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 TATGTGTGCAATTGCGTATTCCAAAAGCAATAGTATAAACGTCGAATGAATTATCATTAA 480
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 ATGGGAGGTTTTCAGCATTTCCTTCAATCCACTGAATGGAAGAAAACCCCAATTCTTCCG 540
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 CACGTGCTTTCCCTACTTCCATCATGGATGGACTAATATCACAAACTGTGACGTCGGGAG 600
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 CCATGAGAGGTTTCATATCAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAA 660
consensus_9389#1 ------------------CAATAACTTCTGGCACTCCATTAATATGTTTAGCATACTTAA 42
******************************************
consensus_9389#0 TTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTG 720
consensus_9389#1 TTAACCTAAAGGCAATATCACCTGTTCCGCCTGCAACATCTAAGTACTTGAGCTTATCTG 102
************************************************************
consensus_9389#0 TTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAAACTCATTA 780
consensus_9389#1 TTGGCATAATTCGGTTTACAAAGCAATCTTTCCAAAAACGGTGAACACCAAAACTCATTA 162
************************************************************
consensus_9389#0 TATCATTCATCAAGTCATATTTTTTGGATACGTTCTCAAACACATGATTTACTTTTGATT 840
consensus_9389#1 TATCCCTCGT---GCCGAA----------------------------------------- 178
**** ** * * * *
consensus_9389#0 GTTTATCCTTGGTTTCTACTGTTTCAAACCCAAAGTGTGTGGTTGACAGAAAGCTCTTCT 900
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 GTGCACTCATCAATCGAAACTTACAAAAAGCATTTTGGATGTGGCATGAAAGAACGCTCA 960
consensus_9389#1 ------------------------------------------------------------
consensus_9389#0 TCTTCTGAAATACG 974
consensus_9389#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||