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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 736 fasta sequence
[GAGGCCAGATTCGGCACGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTA-TTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTTGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCTAACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGATTCGAAACGTGTGGTTACATGGTACGAAGAAGATGATGTCATATGTTTCAGACATCACACATATAAATATGTGGATAAAAAATTGGAACTAACCGAGCATGGGCCCTCATTCGANTTACGTTTGTAT]
[+] EMBL CD080645 [GAGGCCAGATTCGGCACGAG GGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTA TTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTTGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCTAACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGATTCGAAACGTGTGGTTACATGGTACGAAGAAGATGATGTCATATGTTTCAGACATCACACATATAAATATGTGGATAAAAAATTGGAACTAACCGAGCATGGGCCCTCATTCGANTTACGTTTGTAT]
[+] EMBL CD139637 [ CGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAGAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAAATAGAATTTGTTGGAAGCTTGTTTAGC AAACAGATTACCGATGTCATTATTTGTC ACGAATCAC ]
[+] EMBL CD139776 [ CGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCC AAATTAATC ]
[+] EMBL CD137886 [ GAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTA TTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATGAGTCATTTGCCCTTTGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCTAACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGATTCGAAACGTGTGGTTACATGGTA ]
consensusID : consensus_9390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence
[TGAAACGCCAAGCCAGATTACGCAGAGAATTTATTTACAGAAGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGCTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCACAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTCGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAGACATATCCTAATCATATATTTAAGGGATTAAATTCTAACT]
[+] EMBL AI976223 [TGAAACGCCAAGCCAGATTACGCAGAGAATTTATTTACAGAAGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGCTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAATCGTGGTAACTACTTGAATAAGAATTTGTTGGAAGCTTGTTTAGCACAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTCGGTCCAACTGCTATATTCACTTTATACAATGTTCGCACACGTCATGATATGGAAACTATGGGTTGTGGTACCGGAGCGAAAATGCCTCAGACATATCCTAATCATATATTTAAGGGATTAAATTCTAACT]
consensusID : consensus_9390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 555 fasta sequence
[GAGGNCTGCAGGTTCGGCACGAGGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT-ATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCANAATTAGGTCGGGGTAACTACTTGAATAAGAATTGGTNGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGGGTTCCAGACACTTGGNCTATAAGTCATTNGCCCCTGGGTCCAACTTGCTATNTTCACTTTAATTCAACCGTTCCGCACACGTCAATNATATTGGAAACTATGGGTCGGNGGNNCCCGGAGGGAAAAATGCCNCAACCATNTCCTA]
[+] EMBL SM7201 [GAGGNCTGCAGGTTCGGCACGAGGATCAATTGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT ATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA ]
[+] EMBL CD139848 [ TGAAGTTCGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT ATCACTACATCACGTTCTCCTAGCTCAAAACT AAAGAATTTGCTAAAGAA TACGTTTTCTCATT CAAATGCTGCCA ]
[+] EMBL CD139592 [ CGAGATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTT ATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTAAAGAATTACGTTTTCTCATTCCA ]
[+] EMBL SM942 [ AAGATGTTAAAAGCTGNCTTAGNTGAAGGGAAAATGCTACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATGATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAGATCCGCGCGTTGTTGATCACTACATCACGTGCTCCTAGCTCAAGACTAAAAGAATTTGNTAAAGAATTACGTTTTCTCATTCCAAATGCTGCCANAATTAGGTCGGGGTAACTACTTGAATAAGAATTGGTNGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAATCACGTGGGGTTCCAGACACTTGGNCTATAAGTCATTNGCCCCTGGGTCCAACTTGCTATNTTCACTTTAATTCAACCGTTCCGCACACGTCAATNATATTGGAAACTATGGGTCGGNGGNNCCCGGAGGGAAAAATGCCNCAACCATNTCCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9390#0 ----------------------------------------GAGGCCAGATTCGGCACGAG 20
consensus_9390#1 TGAAACGCCAAGCCAGATTACGCAGAGAATTTATTTACAGAAGATCAATTGAAGTTCGAG 60
consensus_9390#2 -------------------GAGGNCTGCAGGTTCGGCACGAGGATCAATTGAAGTTCGAG 41
* ** * * ****
consensus_9390#0 ATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGC 80
consensus_9390#1 ATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGC 120
consensus_9390#2 ATGCTGAAAACGAAAAGAAGAAAAAGATGTTAAAAGCTGCCTTAGCTGAAGGGAAAATGC 101
************************************************************
consensus_9390#0 TACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATG 140
consensus_9390#1 TACCTAAAGAAATTCAAGAAGGTGCTTTACAGCTAAATGAAGAATTAGACTGGAGTGATG 180
consensus_9390#2 TACCTAAAGAAATTCAAGAAGGTGCTTTACAGTTAAATGAAGAATTAGACTGGAGTGATG 161
******************************** ***************************
consensus_9390#0 ATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAG 200
consensus_9390#1 ATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAG 240
consensus_9390#2 ATGGCGGTGAAGGAGTTGCTACTAATCAAGATGATGAGTATCTCTGGGCTGGAACTGAAG 221
************************************************************
consensus_9390#0 ATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA 260
consensus_9390#1 ATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA 300
consensus_9390#2 ATCCGCGCGTTGTTATCACTACATCACGTTCTCCTAGCTCAAAACTAAAAGAATTTGCTA 281
************************************************************
consensus_9390#0 AAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAA-TCGTGGTAACTACTTGAAT 319
consensus_9390#1 AAGAATTACGTTTTCTCATTCCAAATGCTGCCAAAATTAA-TCGTGGTAACTACTTGAAT 359
consensus_9390#2 AAGAATTACGTTTTCTCATTCCAAATGCTGCCANAATTAGGTCGGGGTAACTACTTGAAT 341
********************************* ***** *** ***************
consensus_9390#0 AAGAATTTGTTGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAA 379
consensus_9390#1 AAGAATTTGTTGGAAGCTTGTTTAGCACAACAGATTACCGATGTCATTATTGTCAACGAA 419
consensus_9390#2 AAGAATTGGTNGGAAGCTTGTTTAGCAAAACAGATTACCGATGTCATTATTGTCAACGAA 401
******* ** **************** ********************************
consensus_9390#0 TCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTTGGTCCAACT-GCTAT 438
consensus_9390#1 TCACGTGGCGTTCCAGACACTTTGATTATAAGTCATTTGCCCTTCGGTCCAACT-GCTAT 478
consensus_9390#2 TCACGTGGGGTTCCAGACACTTGGNCTATAAGTCATTNGCCCCTGGGTCCAACTTGCTAT 461
******** ************* * *********** **** * ********* *****
consensus_9390#0 ATTCACTTTA-TACAATG--TTCGCACACGTCA-TGATAT-GGAAACTATGGGTTG-TGG 492
consensus_9390#1 ATTCACTTTA-TACAATG--TTCGCACACGTCA-TGATAT-GGAAACTATGGGTTG-TGG 532
consensus_9390#2 NTTCACTTTAATTCAACCGTTCCGCACACGTCAATNATATTGGAAACTATGGGTCGGNGG 521
********* * *** * *********** * **** ************* * **
consensus_9390#0 TACC--GGAGCGAAAATGCCTCAAACATATCCTAATCATATATTTAAGGGATTAAATTCT 550
consensus_9390#1 TACC--GGAGCGAAAATGCCTCAGACATATCCTAATCATATATTTAAGGGATTAAATTCT 590
consensus_9390#2 NNCCCGGAGGGAAAAATGCCNCAACCATNTCCTA-------------------------- 555
** * * ******** ** *** *****
consensus_9390#0 AACTTAGGTCAACGTGTTCGTTGTATATTGAAACATTTATTTCCCGTACCGAAAGATGAT 610
consensus_9390#1 AACT-------------------------------------------------------- 594
consensus_9390#2 ------------------------------------------------------------
consensus_9390#0 TCGAAACGTGTGGTTACATGGTACGAAGAAGATGATGTCATATGTTTCAGACATCACACA 670
consensus_9390#1 ------------------------------------------------------------
consensus_9390#2 ------------------------------------------------------------
consensus_9390#0 TATAAATATGTGGATAAAAAATTGGAACTAACCGAGCATGGGCCCTCATTCGANTTACGT 730
consensus_9390#1 ------------------------------------------------------------
consensus_9390#2 ------------------------------------------------------------
consensus_9390#0 TTGTAT 736
consensus_9390#1 ------
consensus_9390#2 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||