cluster # 9391

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Schistosoma mansoni
cluster # 9391 cluster # 9391 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9391#0 length = 575 sequences # 1

consensus_9391#1 length = 569 sequences # 7
consensus_9391#2 length = 352 sequences # 1

consensusID : consensus_9391#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [TATTCTCAAAATATATTTAAAGACCTATGTGGCGGATTGGCGAAAAACAGAGGTCACTAGGATGTATGAATACCATACTGTCCCTTTTCGAAAATCCTATGTATGTTTTGCGAAAGAAATGAGTTTCAGAACGCAACACATCATTGAGTTTCAATACAATGAGATCTTGATAATTCACGTATTCGCAACATTAGTGAGTCTTTTACTAACTACCTTAAAAATCGAATTTAGAAGTTAGGCATTTCGAAAAACGTATATTACATGTGGAATCAAAATGATCCTTTTCCGGATGACAAGAAAGCAGTTGCGCCGGCAGCGAGTAACATTGATACAGAGTAATTTCTAGTTCATTAGTTAAGGAAATGAGAAACATAAAAACTATATCTCGTCATGCGTAAATTATTTTGATAAGAGCATTGCCTTGTGATTGATGTTATGAAACATCAAGCANACTTTGAAACTCAGTTTCATCTTACAACTATAACGAATGGAGGTTGTGAGATGCANAAGCTAANAAAACAATCTATTGACCCTTCACCTTTTAAAAGAACGTTGCATATCATAGTACATTCCAC]

[+] EMBL CD153154             [TATTCTCAAAATATATTTAAAGACCTATGTGGCGGATTGGCGAAAAACAGAGGTCACTAGGATGTATGAATACCATACTGTCCCTTTTCGAAAATCCTATGTATGTTTTGCGAAAGAAATGAGTTTCAGAACGCAACACATCATTGAGTTTCAATACAATGAGATCTTGATAATTCACGTATTCGCAACATTAGTGAGTCTTTTACTAACTACCTTAAAAATCGAATTTAGAAGTTAGGCATTTCGAAAAACGTATATTACATGTGGAATCAAAATGATCCTTTTCCGGATGACAAGAAAGCAGTTGCGCCGGCAGCGAGTAACATTGATACAGAGTAATTTCTAGTTCATTAGTTAAGGAAATGAGAAACATAAAAACTATATCTCGTCATGCGTAAATTATTTTGATAAGAGCATTGCCTTGTGATTGATGTTATGAAACATCAAGCANACTTTGAAACTCAGTTTCATCTTACAACTATAACGAATGGAGGTTGTGAGATGCANAAGCTAANAAAACAATCTATTGACCCTTCACCTTTTAAAAGAACGTTGCATATCATAGTACATTCCAC]




>consensus_9391#0
TATTCTCAAAATATATTTAAAGACCTATGTGGCGGATTGGCGAAAAACAGAGGTCACTAG
GATGTATGAATACCATACTGTCCCTTTTCGAAAATCCTATGTATGTTTTGCGAAAGAAAT
GAGTTTCAGAACGCAACACATCATTGAGTTTCAATACAATGAGATCTTGATAATTCACGT
ATTCGCAACATTAGTGAGTCTTTTACTAACTACCTTAAAAATCGAATTTAGAAGTTAGGC
ATTTCGAAAAACGTATATTACATGTGGAATCAAAATGATCCTTTTCCGGATGACAAGAAA
GCAGTTGCGCCGGCAGCGAGTAACATTGATACAGAGTAATTTCTAGTTCATTAGTTAAGG
AAATGAGAAACATAAAAACTATATCTCGTCATGCGTAAATTATTTTGATAAGAGCATTGC
CTTGTGATTGATGTTATGAAACATCAAGCANACTTTGAAACTCAGTTTCATCTTACAACT
ATAACGAATGGAGGTTGTGAGATGCANAAGCTAANAAAACAATCTATTGACCCTTCACCT
TTTAAAAGAACGTTGCATATCATAGTACATTCCAC

consensusID : consensus_9391#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 569
fasta sequence

                              [GTTACGCAGCGATGGTTGTTAAGATTACCAAGGAGGATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCACATGTAATAT]

[+] EMBL AI975297             [GTTACGCAGCGATGGTTGTTAAGATTACCAAGGAGGATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTNTGATTCCACAT       ]
[+] EMBL AI977003             [                   TAAGATTACCAAGGAGGATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACTACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGGTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAAT                                                                      ]
[+] EMBL CD129199             [                      GATTACCACGGAGGATGACATATTCTTAGAAGAATACAGGCAAGCACCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGGCATGATATCTTCTATTCCTATCTGGTTATTTTGGGGCGTGCACAAAATGCCTCTGATACCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGg                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD141222             [                                  gcATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGG                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD095930             [                                               TTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTTCGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTTTGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAAAAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCAATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTT                                                                                                                                  ]
[+] EMBL AA629508             [                                                                                                                                                                                                                                                                                                                                     GCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCACAT       ]
[+] EMBL SMAA28859            [                                                                                                                                                                                                                                                                                                                                                                                                            CTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCACATGTAATAT]




>consensus_9391#1
GTTACGCAGCGATGGTTGTTAAGATTACCAAGGAGGATGAGAGACTCTTAGAAGAATACA
GTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTTTATGTTAATGCAGTCATGATATCTT
CGATTCCTATCTGGTTATTTTGGGGCGTTCACAAAATGCCTCTGATAGCTAATTCATTTT
TGTATCTCATCATTTCACTGGCCTCAACCTTCCTCATATCTATCGCATACAAAAATTCAA
AAACACCGTTGATGGAAAGAATTGCTATCCGTCGAACCGAAGCAATTACCAAAGAAGTCA
ATAACGAAGCTGGTAAAGAAAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCG
AACGAACTAAAAAGGTTGCTGACTACGAATCAACGACTTTCTCAATATTTTACAATAATT
GCCTATTTCTCCTAGTCTTACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAG
TAAATTACTCTGTATCAATGTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAA
AAGGATCATTTTGATTCCACATGTAATAT

consensusID : consensus_9391#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [AAAACCCAAGCCTTGCCTTATGAGTCGTTTATGTACAGTCCATATTCGCAGACTCGACCCTCAACACCGTTTAGGATAGTGACTACAGTTGGTTTGTTAGATGAATTCAACAAAGGGAGAACACGAGCGCTAACGACCGAACATTATAGATATTCCTCTTAGCCACTGGTCTCCATCAACTAATTCACCATAAAATAGCAGCATAGTATAAAATGAACCAGAAAAACAAACCGAATGACGCAACGAGTGATGTCCACTAGGTGAACGATTCTGGCAACACTTTANAAGGATACACTTGATTTGAGANATGATGAAGAACAGCAGANAGTAACAGTAAGACTAGGNAGAATAG]

[+] EMBL CD141406             [AAAACCCAAGCCTTGCCTTATGAGTCGTTTATGTACAGTCCATATTCGCAGACTCGACCCTCAACACCGTTTAGGATAGTGACTACAGTTGGTTTGTTAGATGAATTCAACAAAGGGAGAACACGAGCGCTAACGACCGAACATTATAGATATTCCTCTTAGCCACTGGTCTCCATCAACTAATTCACCATAAAATAGCAGCATAGTATAAAATGAACCAGAAAAACAAACCGAATGACGCAACGAGTGATGTCCACTAGGTGAACGATTCTGGCAACACTTTANAAGGATACACTTGATTTGAGANATGATGAAGAACAGCAGANAGTAACAGTAAGACTAGGNAGAATAG]




>consensus_9391#2
AAAACCCAAGCCTTGCCTTATGAGTCGTTTATGTACAGTCCATATTCGCAGACTCGACCC
TCAACACCGTTTAGGATAGTGACTACAGTTGGTTTGTTAGATGAATTCAACAAAGGGAGA
ACACGAGCGCTAACGACCGAACATTATAGATATTCCTCTTAGCCACTGGTCTCCATCAAC
TAATTCACCATAAAATAGCAGCATAGTATAAAATGAACCAGAAAAACAAACCGAATGACG
CAACGAGTGATGTCCACTAGGTGAACGATTCTGGCAACACTTTANAAGGATACACTTGAT
TTGAGANATGATGAAGAACAGCAGANAGTAACAGTAAGACTAGGNAGAATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9391#1      -------------------------GTTACGCAGCGATGGTTGTTAAGATTACCAAGGAG 35
consensus_9391#2      ------------------------------------------------------------
consensus_9391#0      TATTCTCAAAATATATTTAAAGACCTATGTGGCGGATTGGCGAAAAACAGAGGTCACTAG 60
                                                                                  

consensus_9391#1      GATGAGAGACTCTTAGAAGAATACAGTCAAGCAGCATCAAAGAGTTCGGAGAAGCTAGTT 95
consensus_9391#2      ------------------------------------------------------------
consensus_9391#0      GATGTATGAATACCATACTGTCCCTTTTCGAAAATCCTATGTATGTTTTGCGAAAGAAAT 120
                                                                                  

consensus_9391#1      TATGTTAATGCAGTCATGATATCTTCGATTCCTAT-CTGGTTATTTTGGGGCGTTCACAA 154
consensus_9391#2      -------------------------AAAACCCAAG-CCTTGCCTTATGAGTCGTTTATGT 34
consensus_9391#0      GAGTTTCAGAACGCAACACATCATTGAGTTTCAATACAATGAGATCTTGATAATTCACGT 180
                                                     * *  *       * *      ** *   

consensus_9391#1      AATGCCTCTGATAGCTAATTCATTTTTGTATCTCATC-ATTTCACT----GGCCTCAACC 209
consensus_9391#2      ACAGTCCATATTCGCAGACTCGACCCTCAACACCGTTTAGGATAGT----GACTACAGTT 90
consensus_9391#0      ATTCGCAACATTAGTGAGTCTTTTACTAACTACCTTAAAAATCGAATTTAGAAGTTAGGC 240
                      *    *     * *            *      * *  *           *     *   

consensus_9391#1      --TTCCTCATATCTATCGCATACAAAAATT-CAAAAACACCGTTGATGGAA-AGAATTGC 265
consensus_9391#2      GGTTTGTTAGATGAATTCAACAAAGGGAGAACACGAGCGCTAACGACCGAACATTATAGA 150
consensus_9391#0      ATTTCGAAAAACGTATATTACATGTGGAATCAAAATGATCCTTTTCCGGATGACAAGAAA 300
                        **    * *   **   * *     *    *      *        **  *  *    

consensus_9391#1      -TATCCGTCGAACCGA--AGCAATTACCA-AAGAAGTCA--ATAACGAAGCTGGTAAAGA 319
consensus_9391#2      -TATTCCTCTTAGCCACTGGTCTCCATCA-ACTAATTCACCATAAAATAGC-AGCATAGT 207
consensus_9391#0      GCAGTTGCGCCGGCAGCGAGTAACATTGATACAGAGTAATTTCTAGTTCATTAGTTAAGG 360
                        *          *     *        * *   * * *     *        *   ** 

consensus_9391#1      AAAAAAGCTATCGAAGAAAAACAGAGAGGATGTTGTCCGCGAACGAACTAAAAAGGTTGC 379
consensus_9391#2      ATAAAATGAACC--AGAAAAACAAACCGAATGACGC-----AACGAGTGA-------TGT 253
consensus_9391#0      AAATGAGAAACA--TAAAAACTATATCTCGTCATGCGTA-AATTATTTTGATAAGAGCAT 417
                      * *  *   *      ****  * *     *   *      *                  

consensus_9391#1      TGACTACGAATCAACGACTTTCTCAATATTTTACAATAATTGCCTATTTCTCCTAGTCTT 439
consensus_9391#2      CCACTAGG--TGAACGATTCTGGCAACACTTTANAAGGA--------TACACTTGATTTG 303
consensus_9391#0      TGCCTTG---TGATTGATGTTATGAAACATCAAGCANACTTTGAAACTCAGTTTCATCTT 474
                         **     * *  **   *   **   *  *  *           *     *  * * 

consensus_9391#1      ACTGTTACTTTCTGCTGTTCTTCATCATTTCTCAAATCAAGTAAATTACTCTGTATCAAT 499
consensus_9391#2      AGANATGATGAAGAACAGCAGANAGTAACAGTAAGACTAGGNAGAATAG----------- 352
consensus_9391#0      ACAACTA-TAACGAATGGAGGTTGTGAGATGCANAAGCTAANAAAACAATCTATTGACCC 533
                      *    *  *                 *        *      * *  *            

consensus_9391#1      GTTACTCGCTGCCGGCGCAACTGCTTTCTTGTCATCCGGAAAAGGATCATTTTGATTCCA 559
consensus_9391#2      ------------------------------------------------------------
consensus_9391#0      TTCACCTTTTAAAAGAACGTTGCATATCATAGTACATTCCAC------------------ 575
                                                                                  

consensus_9391#1      CATGTAATAT 569
consensus_9391#2      ----------
consensus_9391#0      ----------