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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 974 fasta sequence
[GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGATGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAACAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC-GAGAATTTCGAT-GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTATCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCATATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTTAAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAAC]
[+] EMBL AI974993 [GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGATGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAACAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAATTCCACAA ]
[+] EMBL AI976191 [GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGATGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAACAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGAATGTGGTTGGTGATTTATGGTACTGTTTTGAGGGCCAA ]
[+] EMBL CD083102 [ CCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAA ]
[+] EMBL CD079740 [ GATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTATCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCATATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTTAAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAA ]
[+] EMBL CD195427 [ acaaaaaagATA CATAA TGGTGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTCAGAGAATTTCGATAGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCTGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACCACAGAGTTCCACAAGCGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAG ]
[-] EMBL CD073998 [ GATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCCCAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTATCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCATATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTTAAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAAC]
[-] EMBL CD149365 [ GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAAC ]
consensusID : consensus_9395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[GCGGAGCTTATACCATTATGTGATGAAAGATTAAATGCTGTGAGATGTGCTGGAAAAACTTTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGAC]
[-] EMBL CD089500 [GCGGAGCTTATACCATTATGTGATGAAAGATTAAATGCTGTGAGATGTGCTGGAAAAACTTTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGAC]
consensusID : consensus_9395#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence
[TTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGGTATTTAGTTTCATTTCTTTAATTCTTTAGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTG]
[+] EMBL CD187049 [TTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGGTATTTAGTTTCATTTCTTTAATTCTTTAGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9395#0 GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGA 60
consensus_9395#1 ------------------------------------------------------------
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 TGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAA 120
consensus_9395#1 ------------------------------------------------------------
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 CAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCT 180
consensus_9395#1 ------------------------------------------------------------
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 CTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTA 240
consensus_9395#1 ------------------------------------------------------------
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 TCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTAT 300
consensus_9395#1 -------------------------------------------------GCGGAGCTTAT 11
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 ACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTCGAGAA 360
consensus_9395#1 ACCATTATGTGATGAAAGATTAAATGCTGTGAGATGTGCTGGAAAAACTTTACTCGAGAA 71
consensus_9395#2 -------------------------------------------------TTACTCGAGAA 11
***********
consensus_9395#0 TTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCT 420
consensus_9395#1 TTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCT 131
consensus_9395#2 TTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCT 71
************************************************************
consensus_9395#0 AAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCA 480
consensus_9395#1 AAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCA 191
consensus_9395#2 AAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCA 131
************************************************************
consensus_9395#0 CGT------------------------------GTCATTCTTAAAACGTGCTCAGATTTT 510
consensus_9395#1 CG-----------------------------------------------------ATTTT 198
consensus_9395#2 CGGTATTTAGTTTCATTTCTTTAATTCTTTAGTGTCATTCTTAAAACGTGCTCAGATTTT 191
** *****
consensus_9395#0 GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGA 570
consensus_9395#1 GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGA 258
consensus_9395#2 GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGA 251
************************************************************
consensus_9395#0 TGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAAT 630
consensus_9395#1 TGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAAT 318
consensus_9395#2 TGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTG---- 307
********************************************************
consensus_9395#0 AGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAG 690
consensus_9395#1 AGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAG 378
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 CGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTC 750
consensus_9395#1 CGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTC 438
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 TTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTA 810
consensus_9395#1 TTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGAC----------------- 481
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 TCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCAT 870
consensus_9395#1 ------------------------------------------------------------
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 ATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTT 930
consensus_9395#1 ------------------------------------------------------------
consensus_9395#2 ------------------------------------------------------------
consensus_9395#0 AAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAAC 974
consensus_9395#1 --------------------------------------------
consensus_9395#2 --------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||