These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9395#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 974 fasta sequence [GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGATGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAACAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC-GAGAATTTCGAT-GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTATCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCATATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTTAAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAAC] [+] EMBL AI974993 [GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGATGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAACAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAATTCCACAA ] [+] EMBL AI976191 [GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGATGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAACAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGAATGTGGTTGGTGATTTATGGTACTGTTTTGAGGGCCAA ] [+] EMBL CD083102 [ CCTCTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTATCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAA ] [+] EMBL CD079740 [ GATACATATTTCGTTCGCATACCGCTGAGCCTATACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTATCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCATATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTTAAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAA ] [+] EMBL CD195427 [ acaaaaaagATA CATAA TGGTGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTCAGAGAATTTCGATAGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCTGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACCACAGAGTTCCACAAGCGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAG ] [-] EMBL CD073998 [ GATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTC GAGAATTTCGAT GGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCCCAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTATCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCATATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTTAAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAAC] [-] EMBL CD149365 [ GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAAC ] consensusID : consensus_9395#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [GCGGAGCTTATACCATTATGTGATGAAAGATTAAATGCTGTGAGATGTGCTGGAAAAACTTTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGAC] [-] EMBL CD089500 [GCGGAGCTTATACCATTATGTGATGAAAGATTAAATGCTGTGAGATGTGCTGGAAAAACTTTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAATAGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAGCGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTCTTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGAC] consensusID : consensus_9395#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [TTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGGTATTTAGTTTCATTTCTTTAATTCTTTAGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTG] [+] EMBL CD187049 [TTACTCGAGAATTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCTAAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCACGGTATTTAGTTTCATTTCTTTAATTCTTTAGTGTCATTCTTAAAACGTGCTCAGATTTTGGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGATGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9395#0 GTATTCCCCGTTTGATACGAAGTCTTGGATCAATCAGGAACTAACTCCTAATGTTGCTGA 60 consensus_9395#1 ------------------------------------------------------------ consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 TGAACGATCAATTGAATGGATATTTGTGACTTCTTTACTTAACTTTTCATTTTGGAGTAA 120 consensus_9395#1 ------------------------------------------------------------ consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 CAGTTATGTTAATTTTGAAGTGCCATACTGCAATAAAGTTTATACGGGTTATTGGGCCCT 180 consensus_9395#1 ------------------------------------------------------------ consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 CTGTGCAGCAGTTAATCGAGCTATCGATGAAGGAGTAGACCTGTTAAATCCTGAAGTTTA 240 consensus_9395#1 ------------------------------------------------------------ consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 TCAAAGTGTGACAGAGGATCAGTTGAGATACATATTTCGTTCGCATACCGCTGAGCCTAT 300 consensus_9395#1 -------------------------------------------------GCGGAGCTTAT 11 consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 ACCATTATTTGATGAAAGATTAAATGCTCTGAGATGTGCTGGAAAAACTTTACTCGAGAA 360 consensus_9395#1 ACCATTATGTGATGAAAGATTAAATGCTGTGAGATGTGCTGGAAAAACTTTACTCGAGAA 71 consensus_9395#2 -------------------------------------------------TTACTCGAGAA 11 *********** consensus_9395#0 TTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCT 420 consensus_9395#1 TTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCT 131 consensus_9395#2 TTTCGATGGGTCATTTAAAAATGCTCTGTCCTCATGTGAAAATTCTGCAGCAAAGCTTCT 71 ************************************************************ consensus_9395#0 AAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCA 480 consensus_9395#1 AAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCA 191 consensus_9395#2 AAAATTATTGTGTGATTATTTCCCTTCTTTCCGTGATTATAGCTTATACAAAGGAAAGCA 131 ************************************************************ consensus_9395#0 CGT------------------------------GTCATTCTTAAAACGTGCTCAGATTTT 510 consensus_9395#1 CG-----------------------------------------------------ATTTT 198 consensus_9395#2 CGGTATTTAGTTTCATTTCTTTAATTCTTTAGTGTCATTCTTAAAACGTGCTCAGATTTT 191 ** ***** consensus_9395#0 GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGA 570 consensus_9395#1 GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGA 258 consensus_9395#2 GGTTGGTGATTTATGGTACTGTTTTGAGGGCAAAGGGTTTGGGTATTTCCACGATATAGA 251 ************************************************************ consensus_9395#0 TGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAAT 630 consensus_9395#1 TGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTGCAAT 318 consensus_9395#2 TGAGATTACTGCCTTTGCCGACTACAGAGTTCCACAAGTGTTACATTATTTTGGTG---- 307 ******************************************************** consensus_9395#0 AGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAG 690 consensus_9395#1 AGAATACAGTGAGGATCTAACAAAAAAGATACATAATGGTGAAGAAATTGCAAACGGAAG 378 consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 CGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTC 750 consensus_9395#1 CGAATTAGAGGTTGAAATTCGAGCAGCCACAATACTAGCTGTGCACAATATTGTCAAGTC 438 consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 TTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGACAATTTCCTTTGGAACTA 810 consensus_9395#1 TTTAAATAGTAAGAATATTAGTTGCAATTCAGTTATGGTGGAC----------------- 481 consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 TCGACGCTCTCATGCTGATGAAATCGATGCCAAAATTCCAATGCACAGGACACGTTGCAT 870 consensus_9395#1 ------------------------------------------------------------ consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 ATACTATTGATTATAGAAATATGATACTTCATGTAAACACATGTAATGAACATTTCGTTT 930 consensus_9395#1 ------------------------------------------------------------ consensus_9395#2 ------------------------------------------------------------ consensus_9395#0 AAACCGAAAATATTGTTTATATTTTTGTAATAAATTATTAGAAC 974 consensus_9395#1 -------------------------------------------- consensus_9395#2 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||