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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1090 fasta sequence
[ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTC-TTGTGTGTGGAACTACTCTTTCCAATTGTCGTCTTTGTTGCTGTATAGAGTTCAACATTTCCATCCGTTTTATGAGTATTAATACTATGAGAACCTGATTGATTTGTTGTACTACTATTTAGATTAGTATTATCATTATTATTTTGATGAATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTTCCTTTGTCTTCTCTGCCTCATGAAGATGATGATGATCGTCAACATCATCACCAGGATGATGATGACANCACCAAGAAGTGGAAGACGCAGTAGACGTCAGTTCTTGTTCATTTTGTTTAGCTTCCAAGTTTTGTGATTCCTTCTGGCATTGTTGTGATTTTCTTAATTCATTCAATTGATCTTTTAAAGCTCTACATAATCCACTAAGTTTTTCTACTTGTTTCTTGGCATTCAATGATTCTGACATTTCTTTTTTATGCTGTTCAGCTAATTCCAACAAACTACGTTGACTAACTTCCCATTTACCTTGCCATGCAACTGCTTCACTCTCACTTAATTGAATACGTTTACCAAGCTTCTCCATTTCATCTTTAGCAGTATCAAACATTTTACGACTATCTGACATTGTTTTGTTGAATGATTGATATTTCTCTTTATAGAATACAATCTGTTCTTTTAATTTAT]
[+] EMBL CD196982 [ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTC TTGTGTGTGGAA ]
[+] EMBL CD196996 [ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATG ]
[+] EMBL CD136065 [ ATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTAATAAAGAAGTACATCAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTT ]
[+] EMBL CD179502 [ TACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTTTCCAATTGTCGTCTTTGTTGCTGTATAGAGTTCAACATTTCCATCCGTTTTATGAGTATTAATACTATGAGAACCTGATTGATTTGTTGTACTACTATTTAGATTAGTATTATCATTATTATTTTGATGAATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTT ]
[+] EMBL CD111519 [ AATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCGGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGT ]
[-] EMBL AI976686 [ ATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTTCCTTTGTCTTCTCTGCCTCATGAAGATGATGATGATCGTCAACATCATCACCAGGATGATGATGACANCACCAAGAAGTGGAAGACGCAGTAGACGTCAGTTCTTGTTCATTTTGTTTAGCTTCCAAGTTTTGTGATTCCTTCTGGCATTGTTGTGATTTTCTTAATTCATTCAATTGATCTTTTAAAGCTCTACATAATCCACTAAGTTTTTCTACTTGTTTCTTGGCATTCAATGATTCTGACATTTCTTTTTTATGCTGTTCAGCTAATTCCAACAAACTACGTTGACTAACTTCCCATTTACCTTGCCATGCAACTGCTTCACTCTCACTTAATTGAATACGTTTACCAAGCTTCTCCATTTCATCTTTAGCAGTATCAAACATTTTACGACTATCTGACATTGTTTTGTTGAATGATTGATATTTCTCTTTATAGAATACAATCTGTTCTTTTAATTTAT]
consensusID : consensus_9402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence
[AAGTTAGAATGAACAAGAAAATTGGAAACAAAGCCTGAACAATGTGATTATTACTGTATTGTATTGTGATTTCTTCTTGTTACTGTATACCATAGGGACTGTTGCATATGAAATAAAAGTGACTAAAAGCTAAAATGTGTTGACAGTAAACCAAAGTGGTCGGTTGAAGCTGAACAAGTAACCAGGAGTTTAAAAAAACAAGATCGATATCAACATATGGAAGACATTTCCTGGATAGGGTTAAATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAATACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTAACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTTTTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGCCCAAACAACTGACTTATTCATTTCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGA-TTTTAGAATTCCTTGATGATGTCGAATTTAGTAACGTAAGTATT]
[+] EMBL CD178616 [AAGTTAGAATGAACAAGAAAATTGGAAACAAAGCCTGAACAATGTGATTATTACTGTATTGTATTGTGATTTCTTCTTGTTACTGTATACCATAGGGACTGTTGCATATGAAATAAAAGTGACTAAAAGCTAAAATGTGTTGACAGTAAACCAAAGTGGTCGGTTGAAGCTGAACAAGTAACCAGGAGTTTAAAAAAACAAGATCGATATCAACATATGGAAGACATTTCCTGGATAGGGTTAAATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAATACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTAACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTTTTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGCCCAAACAACTGACTTATTCATTTCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGA TTTTAGAATTCCTTGATGATGTCGAATTTAGTAACGTAAGTAT ]
[+] EMBL CD188771 [ AATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAATACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTAACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTTTTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCTTGATGATGTCGAATTTAGTAACGTAAGTATT]
consensusID : consensus_9402#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence
[TACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTGGTGTTGTGGGGGGATACTTATTTTTGTCAACAACGACTATGATTTATCATTTTTTCTCATTCAATGTATCGTATTTCCGCGTTATTCAATATTGTTTTATAATTCACATTCCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTTTCCAAATTTGC]
[+] EMBL CD179363 [TACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTGGTGTTGTGGGGGGATACTTATTTTTGTCAACAACGACTATGATTTATCATTTTTTCTCATTCAATGTATCGTATTTCCGCGTTATTCAATATTGTTTTATAATTCACATTCCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTTTCCAAATTTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9402#0 ------------------------------------------------------------
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 AAGTTAGAATGAACAAGAAAATTGGAAACAAAGCCTGAACAATGTGATTATTACTGTATT 60
consensus_9402#0 ------------------------------------------------------------
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 GTATTGTGATTTCTTCTTGTTACTGTATACCATAGGGACTGTTGCATATGAAATAAAAGT 120
consensus_9402#0 ------------------------------------------------------------
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 GACTAAAAGCTAAAATGTGTTGACAGTAAACCAAAGTGGTCGGTTGAAGCTGAACAAGTA 180
consensus_9402#0 -----------------ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGAT 43
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ACCAGGAGTTTAAAAAAACAAGATCGATATCAACATATGGAAGACATTTCC----TGGAT 236
consensus_9402#0 AGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAAT 103
consensus_9402#2 -----------------------------TACATAAAAATGCATAAAGACTAGGGGGAAT 31
consensus_9402#1 AGGGTTAAATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAAT 296
** **************** ***********
consensus_9402#0 ACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTA 163
consensus_9402#2 ACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTA 91
consensus_9402#1 ACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTA 356
*********** *********************************** ***********
consensus_9402#0 ATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTG 223
consensus_9402#2 ATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGT-- 149
consensus_9402#1 ACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTT 416
* ************************************************ ***** *
consensus_9402#0 TTGTTGTTGTGGTGGT---GATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATT 280
consensus_9402#2 --GGTGTTGTGGGGG----GAT-ACTTATTTTTGTCAACAACGACTATGATTTATCATTT 202
consensus_9402#1 TTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGCCCAAACAACTGACTTATTCATT 476
* *** **** ** *** **** *** * * * *** **** **
consensus_9402#0 TCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATT----TTTAGAATT 336
consensus_9402#2 TTTCTCATTCAATGTATCGTATTTCCGCGTTATTCA-ATATTGTTTTATAATTCACATTC 261
consensus_9402#1 TCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGATT-----TTAGAATT 531
* ********** *********** * ******* * **** ** * * * *
consensus_9402#0 CCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATC 396
consensus_9402#2 CCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATC 321
consensus_9402#1 CCTTGATGATGTCGAA--TTTAGTAACGTAAGTATT------------------------ 565
** *********** * ** * * * * **
consensus_9402#0 TGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTC-TTGTGTGTGGAACTACTCTT 455
consensus_9402#2 TGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTT 381
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 TCCAATTGTCGTCTTTGTTGCTGTATAGAGTTCAACATTTCCATCCGTTTTATGAGTATT 515
consensus_9402#2 TCCAAAT-TTGC------------------------------------------------ 392
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 AATACTATGAGAACCTGATTGATTTGTTGTACTACTATTTAGATTAGTATTATCATTATT 575
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 ATTTTGATGAATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTTCCTTTGTCTT 635
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 CTCTGCCTCATGAAGATGATGATGATCGTCAACATCATCACCAGGATGATGATGACANCA 695
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 CCAAGAAGTGGAAGACGCAGTAGACGTCAGTTCTTGTTCATTTTGTTTAGCTTCCAAGTT 755
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 TTGTGATTCCTTCTGGCATTGTTGTGATTTTCTTAATTCATTCAATTGATCTTTTAAAGC 815
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 TCTACATAATCCACTAAGTTTTTCTACTTGTTTCTTGGCATTCAATGATTCTGACATTTC 875
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 TTTTTTATGCTGTTCAGCTAATTCCAACAAACTACGTTGACTAACTTCCCATTTACCTTG 935
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 CCATGCAACTGCTTCACTCTCACTTAATTGAATACGTTTACCAAGCTTCTCCATTTCATC 995
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 TTTAGCAGTATCAAACATTTTACGACTATCTGACATTGTTTTGTTGAATGATTGATATTT 1055
consensus_9402#2 ------------------------------------------------------------
consensus_9402#1 ------------------------------------------------------------
consensus_9402#0 CTCTTTATAGAATACAATCTGTTCTTTTAATTTAT 1090
consensus_9402#2 -----------------------------------
consensus_9402#1 -----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||