These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1090 fasta sequence [ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTC-TTGTGTGTGGAACTACTCTTTCCAATTGTCGTCTTTGTTGCTGTATAGAGTTCAACATTTCCATCCGTTTTATGAGTATTAATACTATGAGAACCTGATTGATTTGTTGTACTACTATTTAGATTAGTATTATCATTATTATTTTGATGAATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTTCCTTTGTCTTCTCTGCCTCATGAAGATGATGATGATCGTCAACATCATCACCAGGATGATGATGACANCACCAAGAAGTGGAAGACGCAGTAGACGTCAGTTCTTGTTCATTTTGTTTAGCTTCCAAGTTTTGTGATTCCTTCTGGCATTGTTGTGATTTTCTTAATTCATTCAATTGATCTTTTAAAGCTCTACATAATCCACTAAGTTTTTCTACTTGTTTCTTGGCATTCAATGATTCTGACATTTCTTTTTTATGCTGTTCAGCTAATTCCAACAAACTACGTTGACTAACTTCCCATTTACCTTGCCATGCAACTGCTTCACTCTCACTTAATTGAATACGTTTACCAAGCTTCTCCATTTCATCTTTAGCAGTATCAAACATTTTACGACTATCTGACATTGTTTTGTTGAATGATTGATATTTCTCTTTATAGAATACAATCTGTTCTTTTAATTTAT] [+] EMBL CD196982 [ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTC TTGTGTGTGGAA ] [+] EMBL CD196996 [ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATG ] [+] EMBL CD136065 [ ATGGAAGACATTTCCTTCCTGGATAGTGTTAAATTAATTGGTTAATAAAGAAGTACATCAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTT ] [+] EMBL CD179502 [ TACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGTTGTTGTGGTGGTGATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTTTCCAATTGTCGTCTTTGTTGCTGTATAGAGTTCAACATTTCCATCCGTTTTATGAGTATTAATACTATGAGAACCTGATTGATTTGTTGTACTACTATTTAGATTAGTATTATCATTATTATTTTGATGAATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTT ] [+] EMBL CD111519 [ AATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCGGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTGTTGT ] [-] EMBL AI976686 [ ATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTTCCTTTGTCTTCTCTGCCTCATGAAGATGATGATGATCGTCAACATCATCACCAGGATGATGATGACANCACCAAGAAGTGGAAGACGCAGTAGACGTCAGTTCTTGTTCATTTTGTTTAGCTTCCAAGTTTTGTGATTCCTTCTGGCATTGTTGTGATTTTCTTAATTCATTCAATTGATCTTTTAAAGCTCTACATAATCCACTAAGTTTTTCTACTTGTTTCTTGGCATTCAATGATTCTGACATTTCTTTTTTATGCTGTTCAGCTAATTCCAACAAACTACGTTGACTAACTTCCCATTTACCTTGCCATGCAACTGCTTCACTCTCACTTAATTGAATACGTTTACCAAGCTTCTCCATTTCATCTTTAGCAGTATCAAACATTTTACGACTATCTGACATTGTTTTGTTGAATGATTGATATTTCTCTTTATAGAATACAATCTGTTCTTTTAATTTAT] consensusID : consensus_9402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [AAGTTAGAATGAACAAGAAAATTGGAAACAAAGCCTGAACAATGTGATTATTACTGTATTGTATTGTGATTTCTTCTTGTTACTGTATACCATAGGGACTGTTGCATATGAAATAAAAGTGACTAAAAGCTAAAATGTGTTGACAGTAAACCAAAGTGGTCGGTTGAAGCTGAACAAGTAACCAGGAGTTTAAAAAAACAAGATCGATATCAACATATGGAAGACATTTCCTGGATAGGGTTAAATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAATACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTAACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTTTTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGCCCAAACAACTGACTTATTCATTTCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGA-TTTTAGAATTCCTTGATGATGTCGAATTTAGTAACGTAAGTATT] [+] EMBL CD178616 [AAGTTAGAATGAACAAGAAAATTGGAAACAAAGCCTGAACAATGTGATTATTACTGTATTGTATTGTGATTTCTTCTTGTTACTGTATACCATAGGGACTGTTGCATATGAAATAAAAGTGACTAAAAGCTAAAATGTGTTGACAGTAAACCAAAGTGGTCGGTTGAAGCTGAACAAGTAACCAGGAGTTTAAAAAAACAAGATCGATATCAACATATGGAAGACATTTCCTGGATAGGGTTAAATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAATACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTAACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTTTTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGCCCAAACAACTGACTTATTCATTTCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGA TTTTAGAATTCCTTGATGATGTCGAATTTAGTAACGTAAGTAT ] [+] EMBL CD188771 [ AATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAATACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTAACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTTTTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGTCCAAACAACTGACTTATTCATTTCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGATTTTTAGAATTCCTTGATGATGTCGAATTTAGTAACGTAAGTATT] consensusID : consensus_9402#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [TACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTGGTGTTGTGGGGGGATACTTATTTTTGTCAACAACGACTATGATTTATCATTTTTTCTCATTCAATGTATCGTATTTCCGCGTTATTCAATATTGTTTTATAATTCACATTCCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTTTCCAAATTTGC] [+] EMBL CD179363 [TACATAAAAATGCATAAAGACTAGGGGGAATACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTAATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTGGTGTTGTGGGGGGATACTTATTTTTGTCAACAACGACTATGATTTATCATTTTTTCTCATTCAATGTATCGTATTTCCGCGTTATTCAATATTGTTTTATAATTCACATTCCCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATCTGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTTTCCAAATTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9402#0 ------------------------------------------------------------ consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 AAGTTAGAATGAACAAGAAAATTGGAAACAAAGCCTGAACAATGTGATTATTACTGTATT 60 consensus_9402#0 ------------------------------------------------------------ consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 GTATTGTGATTTCTTCTTGTTACTGTATACCATAGGGACTGTTGCATATGAAATAAAAGT 120 consensus_9402#0 ------------------------------------------------------------ consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 GACTAAAAGCTAAAATGTGTTGACAGTAAACCAAAGTGGTCGGTTGAAGCTGAACAAGTA 180 consensus_9402#0 -----------------ACAAGATCGATGTCAACATATGGAAGACATTTCCTTCCTGGAT 43 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ACCAGGAGTTTAAAAAAACAAGATCGATATCAACATATGGAAGACATTTCC----TGGAT 236 consensus_9402#0 AGTGTTAAATTAATTGGTTGATAAAGAAGTACATAAAAATGCATAAAGACTAGGGGGAAT 103 consensus_9402#2 -----------------------------TACATAAAAATGCATAAAGACTAGGGGGAAT 31 consensus_9402#1 AGGGTTAAATTAACTGATTGATAAACAAGTAAATAAAAATGCATAAAGGCTAGGGGGAAT 296 ** **************** *********** consensus_9402#0 ACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTA 163 consensus_9402#2 ACAAATGGAGAGAATACAAACAAACTACAGCTGTATTTATTTGGTTTATTTTTAGGAGTA 91 consensus_9402#1 ACAAATGGAGAAGATACAAACAAACTACAGCTGTATTTATTTGGTTTACTTTTAGGAGTA 356 *********** *********************************** *********** consensus_9402#0 ATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGTTG 223 consensus_9402#2 ATTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCATTGGTGT-- 149 consensus_9402#1 ACTTGGAAAGCATCCGAACACATATAGGGATAAGGGAAAATCAACACTTCGTTGGTTTTT 416 * ************************************************ ***** * consensus_9402#0 TTGTTGTTGTGGTGGT---GATGACTTGATTTCTTTGTCCAAACAACTGACTTATTCATT 280 consensus_9402#2 --GGTGTTGTGGGGG----GAT-ACTTATTTTTGTCAACAACGACTATGATTTATCATTT 202 consensus_9402#1 TTGTTGTGGTGGTGGTGGTGATGACTTGATTTCCTTGCCCAAACAACTGACTTATTCATT 476 * *** **** ** *** **** *** * * * *** **** ** consensus_9402#0 TCTCTCATTCAATGTATCGTATTTACCGATTATTCAGAGATTGGATT----TTTAGAATT 336 consensus_9402#2 TTTCTCATTCAATGTATCGTATTTCCGCGTTATTCA-ATATTGTTTTATAATTCACATTC 261 consensus_9402#1 TCTCTCATTCAAAGTATCGTATTTACCGATTATTCAGAGATTGGATT-----TTAGAATT 531 * ********** *********** * ******* * **** ** * * * * consensus_9402#0 CCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATC 396 consensus_9402#2 CCCTGATGATGTCGTATCTTCAATTATACTACAATCTAATTTTAGTTCATTCATGCTATC 321 consensus_9402#1 CCTTGATGATGTCGAA--TTTAGTAACGTAAGTATT------------------------ 565 ** *********** * ** * * * * ** consensus_9402#0 TGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTC-TTGTGTGTGGAACTACTCTT 455 consensus_9402#2 TGTACAGTGAATTAATGAATTCGAGGAACAATTGAATTCATTGTGTGTGGAACTACTCTT 381 consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 TCCAATTGTCGTCTTTGTTGCTGTATAGAGTTCAACATTTCCATCCGTTTTATGAGTATT 515 consensus_9402#2 TCCAAAT-TTGC------------------------------------------------ 392 consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 AATACTATGAGAACCTGATTGATTTGTTGTACTACTATTTAGATTAGTATTATCATTATT 575 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 ATTTTGATGAATCAAATTAGAATCTTTCATTGAATTGTCAACAGTTTTTTCCTTTGTCTT 635 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 CTCTGCCTCATGAAGATGATGATGATCGTCAACATCATCACCAGGATGATGATGACANCA 695 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 CCAAGAAGTGGAAGACGCAGTAGACGTCAGTTCTTGTTCATTTTGTTTAGCTTCCAAGTT 755 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 TTGTGATTCCTTCTGGCATTGTTGTGATTTTCTTAATTCATTCAATTGATCTTTTAAAGC 815 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 TCTACATAATCCACTAAGTTTTTCTACTTGTTTCTTGGCATTCAATGATTCTGACATTTC 875 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 TTTTTTATGCTGTTCAGCTAATTCCAACAAACTACGTTGACTAACTTCCCATTTACCTTG 935 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 CCATGCAACTGCTTCACTCTCACTTAATTGAATACGTTTACCAAGCTTCTCCATTTCATC 995 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 TTTAGCAGTATCAAACATTTTACGACTATCTGACATTGTTTTGTTGAATGATTGATATTT 1055 consensus_9402#2 ------------------------------------------------------------ consensus_9402#1 ------------------------------------------------------------ consensus_9402#0 CTCTTTATAGAATACAATCTGTTCTTTTAATTTAT 1090 consensus_9402#2 ----------------------------------- consensus_9402#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||