|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1073 fasta sequence
[CTCCAGGCCAANAATTTGGCACGAGGTGATAAACTGNGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAATTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTCCAAAAGCATGAGTCACTACATTGTTTCTTTTCTAACTGTAAAGTTGTAAGTCGTGCTGATGCATGATGTCAACCAAGCTGTAGACCTTTCTCTCATCCTACTCTTGATGTTATTAAAAGTCTGCAGAATAAATCGGGATTTTACGAGAATAGTTCATCTTGAAACTGGGACCTGCTTCTAACAGCTATAATTTAATCGTAATTTGTGACACCTCTTTATTGGTATAACAAATATATATAATGCTACCTTCATTGAATTGTCCAGTCTAGCAAAAACCAATAGTGAACTAACTTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT]
[+] EMBL CD079761 [CTCCAGGCCAANAATTTGGCACGAGGTGATAAACTGNGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAATTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTCCAAAAGCATGAGTCACTACATTGTTTCTTTTCTAACTGTAAAGTTGTAAGTCGTGCTGATGCATGATGTCAACCAAGCTGTAGACCTTTCTCTCATCCTACTCTTGATGTTATTAAAAGTCTGCAGAATAAATCGGGATTTTACGAGAATAGTTCATCTTGAAACTGGGACCTGCTTCTAACAGCTATAATTTAATCGTAATTTGTGACACCTCTTTATTGGTATAACAAATATATATAATGCTACCTTCATTGAATTGTCCAGTCTAGCAAAAACCAATAGTGAACTAACTTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGNAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTG ]
[-] EMBL CD074021 [ TTGTCCAGTCTAGCAAAAACCAATAGTGAACTAACTTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCACTCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT]
[-] EMBL CD075909 [ GTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAAACTTTATTTTTCTACCAAAAATGACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT]
[-] EMBL CD128796 [ AATGACTTATCATGAAATGTACAGAAGCACTCCCCTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTAACAGAAACTGTGCCAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGT ATATACTAAGGGTGAgctc ]
[-] EMBL CD128885 [ GACTTATCATGAAATGTACAGAAGCACTACACTGGGGACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGTATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACAACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTAATTTACTAAGGGTGAgctca ]
[-] EMBL CD132378 [ TTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAATGGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGTTAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATGGACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAAGATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGT ]
consensusID : consensus_9403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence
[ATCCTCGGTACGAGGCACCTCCAGTTTTTGGGTCTTTATTACGAAACTAAAGTAATTAGTAAATGAGAAAACATCAAAAATAAAACGAAATGTTTTCTTGGTTATGTCGTTTACTTGAAATCTGTTCATTAACACCTGTGCGGTCAATTGACTTTCAGTAAAGGGCCAGACATAAACAAGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATACCAGGTGTTATCGCCACCCATCCAGAGTAATTGTGTATTGAATGAAGAGCTTGTTGTGTCACGACTTTTATCACAATGCGGATTCTAATGAGCCATTCACCAACGTTATAAGATTCTGCAATGATAAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTTCAAAGCATGAGTCACTACATTGTTTCTTTTCTACTGTAAAGT]
[+] EMBL CD082307 [ATCCTCGGTACGAGGCACCTCCAGTTTTTGGGTCTTTATTACGAAACTAAAGTAATTAGTAAATGAGAAAACATCAAAAATAAAACGAAATGTTTTCTTGGTTATGTCGTTTACTTGAAATCTGTTCATTAACACCTGTGCGGTCAATTGACTTTCAGTAAAGGGCCAGACATAAACAAGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATACCAGGTGTTATCGCCACCCATCCAGAGTAATTGTGTATTGAATGAAGAGCTTGTTGTGTCACGACTTTTATCACAATGCGGATTCTAATGAGCCATTCACCAACGTTATAAGATTCTGCAATGATAAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTTCAAAGCATGAGTCACTACATTGTTTCTTTTCTACTGTAAAGT]
consensusID : consensus_9403#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 456 fasta sequence
[CGGCACGAGGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATACCCAGGGGTTATTTCCACCCANNNNNNNNCNTATTATAGAAAAAAACTGGNGGGGGGGGCTTTTATTCTCATGCGGATTCTAATGAGCCATTCTCCCCCCGTATAAGATTCTGCAATGATGAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAGAATAACTTCGGATTAA]
[+] EMBL CD077547 [CGGCACGAGGTGCAAATCCGACCAAAGGTCAGCACCGGTTCTTGTTGAACAAATGGCCAGTTTTATGCGATAAATATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATAC ]
[-] EMBL CD186084 [ AATGGCCAGTTTTATGCGATAANTATATAGATTGATTATATTTAGGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGAAACCATTGCCATGGTTAACAGCTAATTCAGAATCTAAGAATGCTTGTCGGGTAATAACCAGGGGTTATTTCCACCCANNNNNNNNCNTATTATAGAAAAAAACTGGNGGGGGGGGCTTTTATTCTCATGCGGATTCTAATGAGCCATTCTCCCCCCGTATAAGATTCTGCAATGATGAACTGGTTTCCTAAAAAATTGTTGCTTATAGTTACGGAATCCAAGTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAGAATAACTTCGGATTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9403#1 ------------------------------------------------------------
consensus_9403#2 ------------------------------------------------------------
consensus_9403#0 CTCCAGGCCAANAATTTGGCACGAGGTGATAAACTGNGTTTCCTAAAAAATTGTTGCTTA 60
consensus_9403#1 ------------------------------------------------------------
consensus_9403#2 ------------------------------------------------------------
consensus_9403#0 TAGTTACGGAATCCAATTGATTTTCAAAACATTGTTATTTCGGTAAGTTTGCATAAACGG 120
consensus_9403#1 ------------------------------------------------------------
consensus_9403#2 ------------------------------------------------------------
consensus_9403#0 TTATGCTATCTGCTATGTAAAATAACTTCGGATTAAAAAAGTCTTCCCAGTGATCTGTTC 180
consensus_9403#1 ------------------------------------------------------------
consensus_9403#2 ------------------------------------------------------------
consensus_9403#0 GAGTGTCTCCAAAAGCATGAGTCACTACATTGTTTCTTTTCTAACTGTAAAGTTGTAAGT 240
consensus_9403#1 -------------------------ATCCTCGGTACGAGGCACCTCCAGTTTTTGGGTCT 35
consensus_9403#2 ------------------------------------------------------------
consensus_9403#0 CGTGCTGATGCATGATGTCAACCAAGCTGTAGACCTTTCTCTCATCCTACTCTTGATGTT 300
consensus_9403#1 TTATTACGAAACTAAAGTAATTAGTAAATGAGAAAACATCAAAAATAAAACGAAATGTTT 95
consensus_9403#2 ------------------------------------------------------------
consensus_9403#0 ATTAAAAGTCTGCAGAATAAATCGGGATTTTACGAGAATAGTTCATCTTGAAACTGGGAC 360
consensus_9403#1 TCTTGGTTATGTCGTTTACTTGAAATCTGTTCATTAACACCTGTGCGGTCAATTGACTTT 155
consensus_9403#2 ------------------------------------------------------------
consensus_9403#0 CTGCTTCTAACAGCTATAATTTAATCGTAATTTGTGACACCTCTTTATTGGTATAACAAA 420
consensus_9403#1 CA-GTAAAGGGCCAGACATAAACAAGTGCAAATCCGACCAAAGGTCAGCACCGGTT---C 211
consensus_9403#2 ----------------CGGCACGAGGTGCAAATCCGACCAAAGGTCAGCACCGGTT---C 41
consensus_9403#0 TATATATAATGCTACCTTCATTGAATTGTCCAGTCTAGCAAAAACCAATAGTGAACTAAC 480
* ** * * * **** ** * * *
consensus_9403#1 TTGTTGAAC---AAATGGCCAGTTTTA---TGCGATAAATATATAGATTGATTATATTTA 265
consensus_9403#2 TTGTTGAAC---AAATGGCCAGTTTTA---TGCGATAAATATATAGATTGATTATATTTA 95
consensus_9403#0 TTGTGGATCGCCACACACTAAACGTTAAGGTGCAATACAAACCTCTGATAACGTTTTAAA 540
**** ** * * * * *** *** *** * * * * * * * *
consensus_9403#1 GGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGA 325
consensus_9403#2 GGTACATTTTTCGGTAATATATCATTTTCTTGTGGACTGTTCAAAGGTATTTATCTTCGA 155
consensus_9403#0 ACTTTATTTTTCTACCAAAAATGACTTA-TCATGAAATGTACAGAAGCACT-ACACTGGG 598
* ******* * * ** * ** * ** * *** ** * * * * * * *
consensus_9403#1 AACCATT---------GCCATGGTTAACA-GCTAATTCAGAATCTAAGAATGCTTG---- 371
consensus_9403#2 AACCATT---------GCCATGGTTAACA-GCTAATTCAGAATCTAAGAATGCTTG---- 201
consensus_9403#0 GACTACTCTTCGTGAAGCCCTAGATGAAATGCTAGCACATAATTTACTACAGCCTGGAAT 658
** * * *** * * * * * **** ** *** ** * ** **
consensus_9403#1 ------TCGGGTAATACC-AGGTGTTATCGCCACCCATCCAGAGTAATTGTGTATTGAAT 424
consensus_9403#2 ------TCGGGTAATACCCAGGGGTTATTTCCACCCANNNNNNNN-----CNTATTATAG 250
consensus_9403#0 GGACCACAAGGTTATGCAGAAGTTCGACCAATGTATAAGTAATGCTTTGGCAAAACGTGT 718
*** ** * * * * * *
consensus_9403#1 GAAGAGCT------TGTTGTGTCACGACTTTTATCACAATGCGGATTCTAATGAGCCATT 478
consensus_9403#2 AAAAAAAC------TGGNGGGGGG-GGCTTTTATTCTCATGCGGATTCTAATGAGCCATT 303
consensus_9403#0 TAAAAACCGTCTTTCGCTTCGTGGTCATCTGAATACTTACAGAAACTGTGACAACGTATG 778
** * * * * ** * * * * * * **
consensus_9403#1 --CACCAACGTTATAAGATTCTGCAATGATAAACTGGTTTCCTA---------------- 520
consensus_9403#2 --CTCCCCCCGTATAAGATTCTGCAATGATGAACTGGTTTCCTA---------------- 345
consensus_9403#0 GACGTTAGTGATGAATGATGTGGAAATAAAGGATTCATCTGCTATTATGACAGTTGATAA 838
* * * *** * *** * * * * * ***
consensus_9403#1 ---AAAAATTGTTGCTTATAGTTACG-GAATCCAAG--TGATTTTC---AAAACATTGTT 571
consensus_9403#2 ---AAAAATTGTTGCTTATAGTTACG-GAATCCAAG--TGATTTTC---AAAACATTGTT 396
consensus_9403#0 GATAAAAATAGTTGCTTGTGAAGGCAAGAATGCAAAACCAACTTCCTCAAAAATATCCGT 898
****** ******* * * **** *** * ** * **** ** *
consensus_9403#1 ATT-TCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAA-AATAACTTCGGATT 629
consensus_9403#2 ATT-TCGGTAAGTTTGCATAAACGGTTATGCTATCTGCTATGTAG-AATAACTTCGGATT 454
consensus_9403#0 ATCCTCAATCAGTGATCGTTCAAGGTTAGGTGCTGGTATAGGCGGTGAGGATAACGAACA 958
** ** * *** * * * ***** * * ** * * * ** *
consensus_9403#1 AAAAAAGTCTTCCCAGTGATCTGTTCGAGTGTCTTCAA-AGCATGAGTCACTACATTGTT 688
consensus_9403#2 AA---------------------------------------------------------- 456
consensus_9403#0 ACGCGAAGCTTTTGATTCTGGGGATGAGATGGAATAACCAGTGATGATTACTAGAGAGTA 1018
*
consensus_9403#1 TCTTTTCTACTGTAAAGT------------------------------------- 706
consensus_9403#2 -------------------------------------------------------
consensus_9403#0 ATTTACTAAGGGTGATATGAGAAACAACTTGTACAAATAATACTAAGAATACAAT 1073
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||