cluster # 9404

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Schistosoma mansoni
cluster # 9404 cluster # 9404 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9404#0 length = 595 sequences # 4
consensus_9404#1 length = 584 sequences # 3

consensus_9404#2 length = 326 sequences # 1
consensus_9404#3 length = 141 sequences # 1

consensusID : consensus_9404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 595
fasta sequence

                              [CGAGGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATTTTTTGGATATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACA-CTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTCTATATTATACTCGTTTAGTAAATGTAATTGTTCAGTGATGCCCC]

[+] EMBL CD083598             [CGAGGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATTTTTTGGATATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACA CTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTta                                           ]
[-] EMBL CD179607             [                                                                                                                              GGTTATGATTGTTTTAGGATCTGGTGGACACA CTCCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTAT                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD134349             [                                                                                                                                       TGTCTTAGGATCTGGTGGACACANCTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTCTATATTATACTCGTTTAGTAAATGTAATTGTTCAGTGATGCC  ]
[+] EMBL CD134370             [                                                                                                                                       TGTCTTAGGATCTGGTGGACACA CTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTACTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAG ATTTGCCGAACAAAACCTTTAT ATTATCTGGGAAAATTCTATATTATACTCCTTTAATAAATGTAATTGGTTAGTGATGCCCC]




>consensus_9404#0
CGAGGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATTTTTTGGATATACCAAT
TTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGAT
GACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATAC
TTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTAT
GAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAACCG
CATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGT
GTCTTGTCTATTTGCGTTCCCCATCGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAA
TGGTCCTGGGACATGTATCCCCATATGCTTCGTGGCTATTTTACTTCACATACTGAGAAT
TCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATC
TGGGAAAATTCTATATTATACTCGTTTAGTAAATGTAATTGTTCAGTGATGCCCC

consensusID : consensus_9404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 584
fasta sequence

                              [GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGG-CCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT]

[-] EMBL CD179581             [GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGGNCCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT]
[-] EMBL CD179596             [GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTAGTATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGG CCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT]
[-] EMBL CD179606             [GCGTATTTAGCTATGAGAAATGATNTTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTTGGATTTAGAGAACAAGTGTGATACTAAA     CATAAAGCGCATACCAAGGGCTCGAGAAGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTTCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAATTTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTTTATATTATACTCGTTTAGTAGATGTAATTGTTCAGTGG CCAGAATTGAAGACAAAATATCCAAGATCAATTTACTTAGGACTTTTATCATAAACTACTGCATCCAATCATT]




>consensus_9404#1
GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAATTTTGTGGGTGACTGCGTA
TGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGT
CTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAA
ATATCAGCCACGTTTATACGTTATCGCGGCGACTGACTCTATGAGTGAACAGAAGGTCTT
GGATTTAGAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGA
AGTAAAACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTT
TCCCATCGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTCAACTCTTATAAT
TTTTGTTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTA
TACTCGTTTAGTAGATGTAATTGTTCAGTGGCCAGAATTGAAGACAAAATATCCAAGATC
AATTTACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT

consensusID : consensus_9404#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 326
fasta sequence

                              [CGAAGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATATTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTATATGTTTATTTCATACTTCATGTTAGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGAGTGACTCTATGAGTGATACAGAAGGTCTAGGATTTATGAGAACAAGTGTGATACTAAATTCAGCAT]

[+] EMBL CD148204             [CGAAGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATATTTTGGATAATACCAATTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGATGACTAGGGTTATGATTGTCTTAGGATCTGGTATATGTTTATTTCATACTTCATGTTAGGTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACGTTTATACGTTATCGCGGCGAGTGACTCTATGAGTGATACAGAAGGTCTAGGATTTATGAGAACAAGTGTGATACTAAATTCAGCAT]




>consensus_9404#2
CGAAGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATATTTTGGATAATACCAA
TTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGA
TGACTAGGGTTATGATTGTCTTAGGATCTGGTATATGTTTATTTCATACTTCATGTTAGG
TGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCACG
TTTATACGTTATCGCGGCGAGTGACTCTATGAGTGATACAGAAGGTCTAGGATTTATGAG
AACAAGTGTGATACTAAATTCAGCAT

consensusID : consensus_9404#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 141
fasta sequence

                              [NCAAGTGTGATGATCCAGNGATGTACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATTCTTCTNTATNGACTCGNNAATATCAGNCACGTCNNTNCGCTTNTCNNCGGCGCACTGAC]

[+] EMBL SM6632               [NCAAGTGTGATGATCCAGNGATGTACTAGGGTTATGATTGTCTTAGGATCTGGTGGACACACTGCTGAAATGCTCTCATATTCTTCTNTATNGACTCGNNAATATCAGNCACGTCNNTNCGCTTNTCNNCGGCGCACTGAC]




>consensus_9404#3
NCAAGTGTGATGATCCAGNGATGTACTAGGGTTATGATTGTCTTAGGATCTGGTGGACAC
ACTGCTGAAATGCTCTCATATTCTTCTNTATNGACTCGNNAATATCAGNCACGTCNNTNC
GCTTNTCNNCGGCGCACTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9404#1      -------------------GCGTATTTAGCTATGAGAAATGATTTTTTGGATAATACCAA 41
consensus_9404#3      ------------------------------------------------------------
consensus_9404#0      CGAGGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATTTTTTGGATA-TACCAA 59
consensus_9404#2      CGAAGGTCATCAGCTGCAAGCGTATTTAGCTATGAGAAATGATATTTTGGATAATACCAA 60
                                                                                  

consensus_9404#1      TTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGA 101
consensus_9404#3      ---------------------------------------NCAAGTGTGATGATCCAGNGA 21
consensus_9404#0      TTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGA 119
consensus_9404#2      TTTTGTGGGTGACTGCGTATGTTTATTTCTATATCAAAGCCAAGTGTGATGATCCAGCGA 120
                                                              ***************** **

consensus_9404#1      TG-ACTAGGGTTATGATTGTCTTAGGATCTGGT--------------------------- 133
consensus_9404#3      TGTACTAGGGTTATGATTGTCTTAGGATCTGGT--------------------------- 54
consensus_9404#0      TG-ACTAGGGTTATGATTGTCTTAGGATCTGGT--------------------------- 151
consensus_9404#2      TG-ACTAGGGTTATGATTGTCTTAGGATCTGGTATATGTTTATTTCATACTTCATGTTAG 179
                      ** ******************************                           

consensus_9404#1      --GGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCAC 191
consensus_9404#3      --GGACACACTGCTGAAATGCTCTCATATTCTTCTNTATNGACTCGNNAATATCAGNCAC 112
consensus_9404#0      --GGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCAC 209
consensus_9404#2      GTGGACACACTGCTGAAATGCTCTCATATACTTCTGTATTGACTTGTAAATATCAGCCAC 239
                        *************************** ***** *** **** *  ******** ***

consensus_9404#1      GTTTATACG--TTATCGCGGCG-ACTGACTCTATGAGTGA-ACAGAAGGTCTTGGATTTA 247
consensus_9404#3      GTCNNTNCGCTTNTCNNCGGCGCACTGAC------------------------------- 141
consensus_9404#0      GTTTATACG--TTATCGCGGCG-ACTGACTCTATGAGTGA-ACAGAAGGTCTTGGATTTA 265
consensus_9404#2      GTTTATACG--TTATCGCGGCG-AGTGACTCTATGAGTGATACAGAAGGTCTAGGATTTA 296
                      **   * **  *     ***** * ****                               

consensus_9404#1      -GAGAACAAGTGTGATACTAAATTCAGCATAAAGCGCATACCAAGGGCTCGAGAAGTAAA 306
consensus_9404#3      ------------------------------------------------------------
consensus_9404#0      -GAGAACAAGTGTGATACTAAATTCAGCATAAACCGCATACCAAGGGCTCGAGAAGTAAA 324
consensus_9404#2      TGAGAACAAGTGTGATACTAAATTCAGCAT------------------------------ 326
                                                                                  

consensus_9404#1      ACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTCGTCTATTTGCGTTTCCCAT 366
consensus_9404#3      ------------------------------------------------------------
consensus_9404#0      ACAGTCATATGCCAGTAGCATCTTCAGTACCTTAGTGTCTTGTCTATTTGCGTTCCCCAT 384
consensus_9404#2      ------------------------------------------------------------
                                                                                  

consensus_9404#1      CGTCACCATTTTTAGGGCGAAATTGATACTGAGAATTCATTC-AACTCTTATAATTTTTG 425
consensus_9404#3      ------------------------------------------------------------
consensus_9404#0      CGTCACCATTTTTAGGGCGAAATTGATTTTGTGTAATGGTCCTGGGACATGTATCCCCAT 444
consensus_9404#2      ------------------------------------------------------------
                                                                                  

consensus_9404#1      TTGAAAGTATTTGCCGTACCAAAACTTTATCATTATCCGGGAAAATTTTATATTATACTC 485
consensus_9404#3      ------------------------------------------------------------
consensus_9404#0      ATGCTTCGTGGCTATTTTACTTCACATACTGAGAATTCATTCAACTCTTATAATTTTTGT 504
consensus_9404#2      ------------------------------------------------------------
                                                                                  

consensus_9404#1      GTTTAGTAGATGTAATTGTTCAGTGGCCAGAATTGAAGACAAAATATCCAAGATCAATTT 545
consensus_9404#3      ------------------------------------------------------------
consensus_9404#0      TGAAAGTATTTGCCGTACCAAAACTTTATCATTATCTGGGAAAATTCTATATTATACTCG 564
consensus_9404#2      ------------------------------------------------------------
                                                                                  

consensus_9404#1      ACTTAGGACTTTTATCATGAACTACTGCATCCAATCATT 584
consensus_9404#3      ---------------------------------------
consensus_9404#0      TTTAGTAAATGTAATTGTTCAGTGATGCCCC-------- 595
consensus_9404#2      ---------------------------------------