cluster # 9407

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Schistosoma mansoni
cluster # 9407 cluster # 9407 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9407#0 length = 312 sequences # 6

consensus_9407#1 length = 259 sequences # 3

consensusID : consensus_9407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 312
fasta sequence

                              [CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG-AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATGATATTTTGGAGTAAAATAGAAGGCTTCTATAAATTANCATTCGTGTAACCAGTTGCGTCTTGTTCCTNCTGAAATAGAGATT]

[+] EMBL CD135171             [CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATG                                                                                  ]
[+] EMBL CD135081             [CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATG                                                                                  ]
[+] EMBL AA559686             [                                  GTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTNACACCTTGAAAGGCCGTTTTAATATANTAATGGCCAATTATNCAATCTTGTTCGCGGGCATCNCNNTTTGGCNAATGAGGTCAAAGNAAGAAAAAANCCCTAAAAAAAGATGAGACCNGATGATATTTTGGAGTAAAATAGAAGGCTTCTATAAATTANCATTCGTGTAACCAGTTGCGTCTTGTTCCTNCTGAAATAGA    ]
[+] EMBL AA559432             [                                               GTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTNACACCTTGAAAGGCCGTTTTAATATANTAATGGCCAATTATGCNATCTTGTTCGCGGGCATCGCAATTTGGCGAATNANGTCNAAG AANAAAAAANCCCTAAAAAAAGATNAG                                                                                          ]
[-] EMBL AI964728             [                                                TCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAGATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATGATATTTTGGAGTAGAATAGAAGGCTTCTATAAATTAGCATTCGTGTAACCAGTTGCGTCTTG TCCTACTGAAATAGAGATT]
[+] EMBL BG930601             [                                                       GTCGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGACCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGA                                                                                         ]




>consensus_9407#0
CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGC
AGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAA
GGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGG
CGAATGAGGTCAAAGAAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATGATATTTTGGA
GTAAAATAGAAGGCTTCTATAAATTANCATTCGTGTAACCAGTTGCGTCTTGTTCCTNCT
GAAATAGAGATT

consensusID : consensus_9407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 259
fasta sequence

                              [TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCA-GTGTGCCTGATTCGGCGTTCACT-GGTTGGAAATACTATTTTAATTCT-TACACCTTGAAAGGCCGTTTTAATGTGAGTTGCATATTAATTCGAAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGCAACAT-GACGTAAAGTAGACATGCATTATATCACGANGGCAATTGACAAATGAGATT]

[+] EMBL SMAA8272             [TTCCGGTTTAGTTGGTCCTGGCGACATGTCCGGAGGTAGCACGTGTGCCTGATTCGGCGTTCACTCGGTTGGAAATACTATTTTAATTCTCTACACCTTGAAAGGCCGTTTTAATGTGAGTTGCATATTAATTCGCAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGCAACAT GACGTCAAGTAGACATGCATTATATCACGANGGCAATTGACAAATGAG   ]
[+] EMBL SMAA8271             [TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCA GTGTGCCTGATTCGGCGTTCACT GGTTGGAAATACTATTTTAATTCT TACACCTTGAAAGGCCGTTTTAATGTGAGTTGCATATTAATTCGAAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTNCAGCAACAT GACGTAAAGTAGAAATGCATTATATCACGACGGCAATTGACAAATGAGATT]
[+] EMBL SMAA85750            [TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCA GTGTGCCTGATTCGGCGTTCACT GGTTGGAAATACTATTTTAATTCT TACACCTTGAAATGCCGTTTTAATGTGAGTTGCATATTAATTCGAAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGCAACATGGACGTAAAGTAG                                       ]




>consensus_9407#1
TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTT
CACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATGTGAGTTG
CATATTAATTCGAAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATT
AGGCGAAAAGTATACATTTCAGCAACATGACGTAAAGTAGACATGCATTATATCACGANG
GCAATTGACAAATGAGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9407#0      CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGC 60
consensus_9407#1      --------------------TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGC 40
                                          ****************************************

consensus_9407#0      AGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAA 120
consensus_9407#1      AGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAA 100
                      ************************************************************

consensus_9407#0      GGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGG 180
consensus_9407#1      GGCCGTTTTAATGTG--AGTTGCATATTA---------ATTCGAAAGTA----AAAATAA 145
                      ************ *   * * **  ****          ****   * *    **  *  

consensus_9407#0      CGAATGAGGTCAAAGAAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATGATATTTTGG- 239
consensus_9407#1      TG--TGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGC 203
                       *  **   *     ******* *    * ** **  * * **   *   * ****  * 

consensus_9407#0      AGTAAAATAGAAGGCTTCTATAAATTANCATTCGTGTAACCAGTTGCGTCTTGTTCCTNC 299
consensus_9407#1      AACATGACGTAAAGTAGACATGCATTATA--TCACGANGGCAATTGACAAATGAGATT-- 259
                      *  *  *   ** *     **  ****    **  *    ** ***     **    *  

consensus_9407#0      TGAAATAGAGATT 312
consensus_9407#1      -------------