These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9407#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 312 fasta sequence [CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG-AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATGATATTTTGGAGTAAAATAGAAGGCTTCTATAAATTANCATTCGTGTAACCAGTTGCGTCTTGTTCCTNCTGAAATAGAGATT] [+] EMBL CD135171 [CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATG ] [+] EMBL CD135081 [CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATG ] [+] EMBL AA559686 [ GTCTTGGCGACATGTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTNACACCTTGAAAGGCCGTTTTAATATANTAATGGCCAATTATNCAATCTTGTTCGCGGGCATCNCNNTTTGGCNAATGAGGTCAAAGNAAGAAAAAANCCCTAAAAAAAGATGAGACCNGATGATATTTTGGAGTAAAATAGAAGGCTTCTATAAATTANCATTCGTGTAACCAGTTGCGTCTTGTTCCTNCTGAAATAGA ] [+] EMBL AA559432 [ GTCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTNACACCTTGAAAGGCCGTTTTAATATANTAATGGCCAATTATGCNATCTTGTTCGCGGGCATCGCAATTTGGCGAATNANGTCNAAG AANAAAAAANCCCTAAAAAAAGATNAG ] [-] EMBL AI964728 [ TCGGGAGGTAGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAGATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATGATATTTTGGAGTAGAATAGAAGGCTTCTATAAATTAGCATTCGTGTAACCAGTTGCGTCTTG TCCTACTGAAATAGAGATT] [+] EMBL BG930601 [ GTCGCAGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAAGGCCGTTTTAATATAGTAATGACCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGGCGAATGAGGTCAAAG AAGAAAAAAGCCCTAAAAAAAGATGAGA ] consensusID : consensus_9407#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 259 fasta sequence [TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCA-GTGTGCCTGATTCGGCGTTCACT-GGTTGGAAATACTATTTTAATTCT-TACACCTTGAAAGGCCGTTTTAATGTGAGTTGCATATTAATTCGAAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGCAACAT-GACGTAAAGTAGACATGCATTATATCACGANGGCAATTGACAAATGAGATT] [+] EMBL SMAA8272 [TTCCGGTTTAGTTGGTCCTGGCGACATGTCCGGAGGTAGCACGTGTGCCTGATTCGGCGTTCACTCGGTTGGAAATACTATTTTAATTCTCTACACCTTGAAAGGCCGTTTTAATGTGAGTTGCATATTAATTCGCAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGCAACAT GACGTCAAGTAGACATGCATTATATCACGANGGCAATTGACAAATGAG ] [+] EMBL SMAA8271 [TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCA GTGTGCCTGATTCGGCGTTCACT GGTTGGAAATACTATTTTAATTCT TACACCTTGAAAGGCCGTTTTAATGTGAGTTGCATATTAATTCGAAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTNCAGCAACAT GACGTAAAGTAGAAATGCATTATATCACGACGGCAATTGACAAATGAGATT] [+] EMBL SMAA85750 [TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGCA GTGTGCCTGATTCGGCGTTCACT GGTTGGAAATACTATTTTAATTCT TACACCTTGAAATGCCGTTTTAATGTGAGTTGCATATTAATTCGAAAGTAAAAATAATGTGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGCAACATGGACGTAAAGTAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9407#0 CGAGCGCGCGCTTTAAATCTTTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGC 60 consensus_9407#1 --------------------TTCCGGTTTAGTTGGTCTTGGCGACATGTCGGGAGGTAGC 40 **************************************** consensus_9407#0 AGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAA 120 consensus_9407#1 AGTGTGCCTGATTCGGCGTTCACTGGTTGGAAATACTATTTTAATTCTTACACCTTGAAA 100 ************************************************************ consensus_9407#0 GGCCGTTTTAATATAGTAATGGCCAATTATGCAATCTTGTTCGCGGGCATCGCAATTTGG 180 consensus_9407#1 GGCCGTTTTAATGTG--AGTTGCATATTA---------ATTCGAAAGTA----AAAATAA 145 ************ * * * ** **** **** * * ** * consensus_9407#0 CGAATGAGGTCAAAGAAGAAAAAAGCCCTAAAAAAAGATGAGACCTGATGATATTTTGG- 239 consensus_9407#1 TG--TGGAATTGTTTAAGAAAATATTTTTTAACAATTAGGCGAAAAGTATACATTTCAGC 203 * ** * ******* * * ** ** * * ** * * **** * consensus_9407#0 AGTAAAATAGAAGGCTTCTATAAATTANCATTCGTGTAACCAGTTGCGTCTTGTTCCTNC 299 consensus_9407#1 AACATGACGTAAAGTAGACATGCATTATA--TCACGANGGCAATTGACAAATGAGATT-- 259 * * * ** * ** **** ** * ** *** ** * consensus_9407#0 TGAAATAGAGATT 312 consensus_9407#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||