cluster # 9410

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Schistosoma mansoni
cluster # 9410 cluster # 9410 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9410#0 length = 609 sequences # 4
consensus_9410#1 length = 454 sequences # 3

consensus_9410#2 length = 343 sequences # 1
consensus_9410#3 length = 247 sequences # 1

consensusID : consensus_9410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 609
fasta sequence

                              [AATGTTATATTATGGCATATTGAAGCGAACGAAACATATGTTTATTAATTTACAAATTCAACACAACGTATACTTTATTAGGTGCATCATGGCGCAGTACACTTACAAAAATGAAACAAAAGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT-GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATATACTTTCCAAAGAAAGCAGTTGAAGTGCGGTAGCCTTTGAATCTGCAAGTAAACGATTTTGAATATNAAAAC]

[+] EMBL CD077326             [AATGTTATATTATGGCATATTGAAGCGAACGAAACATATGTTTATTAATTTACAAATTCAACACAACGTATACTTTATTAGGTGCATCATGGCGCAGTACACTTACAAAAATGAAACAAAAGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAAAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTC                                                                                                                      ]
[+] EMBL CD197621             [                                                                                                   CACTTACAAAAATGAAACAAAAGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATATACTTTCCAAAGAAAGCAGTT                                                   ]
[+] EMBL CD140812             [                                                                                                                                                                      ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCT GAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATAACAATACAATTCCATATAATCTTCGATTTCTTGGACAGCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAGCAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGTTGCATGTATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATATACTTTCCAAAGAAAGCAGTTGAAGTGCGGTAGCCTTTGAATCTGCAAGTAAACGATTTTGAATATNAAAAC]
[-] EMBL SMAA69225            [                                                                                                                                                                                                                                      TCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTNGAATTCCAATAAGACTCCATACACATTGAATTTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGAC                                                                                                                                                                                                                                                           ]




>consensus_9410#0
AATGTTATATTATGGCATATTGAAGCGAACGAAACATATGTTTATTAATTTACAAATTCA
ACACAACGTATACTTTATTAGGTGCATCATGGCGCAGTACACTTACAAAAATGAAACAAA
AGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAGAAGACATC
CATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGT
GTTCGGTACAATATTTACGGCATTCATCTGAATTCCAATAAGACTCCATACACATTGAAT
TTTCTTTGAGAAAATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACAG
CATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTAG
CAAATCTTAATGCCTCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACTGT
TGCATGTATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATATAC
TTTCCAAAGAAAGCAGTTGAAGTGCGGTAGCCTTTGAATCTGCAAGTAAACGATTTTGAA
TATNAAAAC

consensusID : consensus_9410#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 454
fasta sequence

                              [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAAAAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATTACGTACAGTATTATTAAA]

[+] EMBL CD140755             [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAAAAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATTACGTACAGTATTATTAAA]
[+] EMBL CD140907             [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAATAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATTACGTACAGTATTATTAA ]
[+] EMBL CD140843             [ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAAAAACCGATAGAAATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAGTTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGATATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGTATTAATAATGTACATT                  ]




>consensus_9410#1
ATTAAGAAGACATCCATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAA
CAGGTCACTAAAGTGTTCGGTACAATATTTACGGCATTCATCTGAAAAAAACCGATAGAA
ATAAGCATTTCATTAATAATCATGGGAATGTATAACCAAGAAGAGCTTCATGTGTTTAAG
TTTGCATTATAATGGTTCCGTAAAGACCTAGACCAAACTATTGTTACGTCCCTTTAAGAT
ATATATTGATCTGAATAAAATTAGGTTTTAGCTAAACGATGCATCTGTAATACTTTTTCA
GTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAAAGTA
TATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGACAAGT
ATTAATAATGTACATTACGTACAGTATTATTAAA

consensusID : consensus_9410#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [AATTTATAGGAGCAACTTTATTGTCATTACAAGGAGTCTTGTATCTTATTTAATAATACTGTACGTAATGTACATTATTAATACTTGTGAACTTACACCATTAAAAGAATGGTTTTGGTATGGCTAAAAAAGTGCTTTTCCAAAAAATTTTACGTTAAAAAAAAATAAATGTCGAATAATTTTAATCCTTGGACCAAAAAAACGTGGAAAAGTTTTTACGAGTGGATCGTTTTAGCAAAAACTAATTTTTTTCAGTCAAATTATCTTAAGGGGGGCAAAAAAGTTCGGCAAGGCTTCAGGGACACTTAAAGGAAATTAAAACAGGAGGTTTTGGGAAAAACTC]

[+] EMBL AI723349             [AATTTATAGGAGCAACTTTATTGTCATTACAAGGAGTCTTGTATCTTATTTAATAATACTGTACGTAATGTACATTATTAATACTTGTGAACTTACACCATTAAAAGAATGGTTTTGGTATGGCTAAAAAAGTGCTTTTCCAAAAAATTTTACGTTAAAAAAAAATAAATGTCGAATAATTTTAATCCTTGGACCAAAAAAACGTGGAAAAGTTTTTACGAGTGGATCGTTTTAGCAAAAACTAATTTTTTTCAGTCAAATTATCTTAAGGGGGGCAAAAAAGTTCGGCAAGGCTTCAGGGACACTTAAAGGAAATTAAAACAGGAGGTTTTGGGAAAAACTC]




>consensus_9410#2
AATTTATAGGAGCAACTTTATTGTCATTACAAGGAGTCTTGTATCTTATTTAATAATACT
GTACGTAATGTACATTATTAATACTTGTGAACTTACACCATTAAAAGAATGGTTTTGGTA
TGGCTAAAAAAGTGCTTTTCCAAAAAATTTTACGTTAAAAAAAAATAAATGTCGAATAAT
TTTAATCCTTGGACCAAAAAAACGTGGAAAAGTTTTTACGAGTGGATCGTTTTAGCAAAA
ACTAATTTTTTTCAGTCAAATTATCTTAAGGGGGGCAAAAAAGTTCGGCAAGGCTTCAGG
GACACTTAAAGGAAATTAAAACAGGAGGTTTTGGGAAAAACTC

consensusID : consensus_9410#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [TAAAGTTAAAGTGGCCTTTGCACTTCAAAATTGTCACATGATGAGATGGTTCTGCACCTTTTTCATATCTAAACCTTTATTGACGTTTTTCGAATTAATTTCTTTTCAGCATTGTTTCTACGAAATGCTCGTCAATCTCACTGTCAGAATGGGGGATTATACACAACTCAGTTTTTATATTCAAAGTCGTTTACTTGCAGATTCAAAGGCTACCGTAATACCTTATCTTATAAAAATGAGAACTTTG]

[+] EMBL CD087089             [TAAAGTTAAAGTGGCCTTTGCACTTCAAAATTGTCACATGATGAGATGGTTCTGCACCTTTTTCATATCTAAACCTTTATTGACGTTTTTCGAATTAATTTCTTTTCAGCATTGTTTCTACGAAATGCTCGTCAATCTCACTGTCAGAATGGGGGATTATACACAACTCAGTTTTTATATTCAAAGTCGTTTACTTGCAGATTCAAAGGCTACCGTAATACCTTATCTTATAAAAATGAGAACTTTG]




>consensus_9410#3
TAAAGTTAAAGTGGCCTTTGCACTTCAAAATTGTCACATGATGAGATGGTTCTGCACCTT
TTTCATATCTAAACCTTTATTGACGTTTTTCGAATTAATTTCTTTTCAGCATTGTTTCTA
CGAAATGCTCGTCAATCTCACTGTCAGAATGGGGGATTATACACAACTCAGTTTTTATAT
TCAAAGTCGTTTACTTGCAGATTCAAAGGCTACCGTAATACCTTATCTTATAAAAATGAG
AACTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9410#0      AATGTTATATTATGGCATATTGAAGCGAACGAAACATATGTTTATTAATTTACAAATTCA 60
consensus_9410#1      ------------------------------------------------------------
consensus_9410#3      ------------------------------------------------------------
consensus_9410#2      ------------------------------------------------------------
                                                                                  

consensus_9410#0      ACACAACGTATACTTTATTAGGTGCATCATGGCGCAGTACACTTACAAAAATGAAACAAA 120
consensus_9410#1      ------------------------------------------------------------
consensus_9410#3      ------------------------------------------------------------
consensus_9410#2      ------------------------------------------------------------
                                                                                  

consensus_9410#0      AGAAAAGAGTAAAAAGACACAGTTATATAGGGATCACAGAATAAGTATTAAGAAGACATC 180
consensus_9410#1      ----------------------------------------------ATTAAGAAGACATC 14
consensus_9410#3      ------------------------------------------------------------
consensus_9410#2      ------------------------------------------------------------
                                                                                  

consensus_9410#0      CATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGT 240
consensus_9410#1      CATTTTCTTTTATATGAAATTATAGTTCAAATTAAGTGGACGGAAACAGGTCACTAAAGT 74
consensus_9410#3      ------------------------------------------------------------
consensus_9410#2      ------------------------------------------------------------
                                                                                  

consensus_9410#0      GTTCGGTACAATATTTACGGCATTCATCTGAATTCCAATAAGACTCCATACACATTGAAT 300
consensus_9410#1      GTTCGGTACAATATTTACGGCATTCATCTGAA-------AAAAACCGATAGAAATAAGCA 127
consensus_9410#3      ------------------------------------------------------------
consensus_9410#2      -----------AATTTATAGGAGCAACTTTAT------TGTCATTACAAGGAGTCTTGTA 43
                                                                                  

consensus_9410#0      TTTCTTTGAGAAA-ATGGTGATTACAATACAATTCCATATAATCTTCGATTTCTTGGACA 359
consensus_9410#1      TTTCATTAATAATCATGGGAAT----GTATAACCAAGAAGAGCTTCATGTGTTTAAGTTT 183
consensus_9410#3      ---------------------------TAAAGTTAAAGTGGCCTTTGCACTTCAAAATTG 33
consensus_9410#2      TCTTATTTAATAATACTGTACGTAATGTACATT---ATTAATACTTGTGAACTTACACCA 100
                                                 ** *             *               

consensus_9410#0      GCATCCAGATAATTGCGAACATTCTCCATGTCAATGATATTTTCTGAGCGATGCAGCCTA 419
consensus_9410#1      GCATTATAATGGTTCCGTAAAGAC-CTAGACCAA-ACTATTGTT---ACGTCCCTTTAAG 238
consensus_9410#3      TCAC----ATGAT---GAGATGGTTCTGCACC-------TTTTT-------CATATCTAA 72
consensus_9410#2      TTAAAAGAATGGTTTTGGTATGGC--TAAAAAAGTGCTTTTCCAAAAAATTTTACGTTAA 158
                        *     **  *   *                      **                   

consensus_9410#0      GCAAATCTTAATGCC-TCTAATGGCCGTCCTTTTATTAGTAATGCATCGAACAATTCACT 478
consensus_9410#1      ATATATATTGATCTG-AATAAAATTAGGTTTTAGCTAAACGATGCATCTG-TAATACTTT 296
consensus_9410#3      ACCTTTATTGACGTT-TTTCGAATTAATTTCTTT-TCAGCATTGTTTCTA-CGAAATGCT 129
consensus_9410#2      AAAAAAATAAATGTCGAATAATTTTAATCCTTGGACCAAAAAAACGTGGA--AAAGTTTT 216
                             *  *       *            *     *        *      *     *

consensus_9410#0      GTTGCATGT-ATTCAATCTCTTTAGCATATCAATACCAAGTTGTCCTGCTGCGGGATATA 537
consensus_9410#1      TTCAGTTATTATTGGATCAAGAAATAAAATAATTGACATTTTATTTTGTTTTAACGTAAA 356
consensus_9410#3      CGTCAATCTCACTG--TCAGAATGGGGGATTATACACAACTCA----GTTTTTATATTCA 183
consensus_9410#2      TACGAGTGG-ATCGTTTTAGCAAAAACTAATTTTTTTCAGTCAAATTATCTTAAGGGGGG 275
                            *   *     *           *           *                   

consensus_9410#0      TACTTTCCAAAGAAAGCAGTTGAAGTGCGGTAG------CCTTTGAATCTGCAAGTAAAC 591
consensus_9410#1      AGTATATGGAGAAGCACGTTTTTAGCATACCAAAACCATTCTTTTAATGTGTAAGTTGAC 416
consensus_9410#3      AAGTCGTTTACTTGCAGATTCAAAGGCTACCGTAA----TACCTTATCTTATAAAAATGA 239
consensus_9410#2      CAAAAAAGTTCGGCAAGGCTTCAGGGACACTTAAA--------GGAAATTA-AAACAGGA 326
                                         *    *                    *   *  **      

consensus_9410#0      GATTTTGAATA-TNAAAAC------------------- 609
consensus_9410#1      AAGTATTAATAATGTACATTACGTACAGTATTATTAAA 454
consensus_9410#3      GAACTTTG------------------------------ 247
consensus_9410#2      GGTTTTGGGAAAAACTC--------------------- 343
                           *