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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 999 fasta sequence
[GGCCAAAAGTTCGGCACGAGGGGCGACTATATGAGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGAATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATATATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAACTGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAGAAAATATTTGGTAGGCTGTTCAGAGTGTTTGTGCACGTTTATATTCATCACTTTGATCGTTTGCATG-AGATAGGAGCAGAAGCTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTCACTAACAGGATCATATAAATAAATTGCTCTCAAATTCTGTACATTATCTGAATGACCGGGCTGTCGCGAGAAGCAAAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTTTTGGTTCCTGATGTTTTGCTGCTTCTTCTTTGTACAAAAGAAACTGATTTTCTCATATGTCGAACATATATTTATGGTATTTTTCCTCTCTGCTTCTGTTCTTAAAATAAGAAACTGTGCATTTCCCACTCATCCATACCATTATTCAACCGGCAACCAAAAATAATATTTTCCTTTATTTAGATTAATTATGTACGCCTTTTTGTCTCATTTTCTATGCATCTGTAAAGTTCGTTTAACAAGTGTATTCACTATTTTCGTACAGCAAATCTTGATTTTAAAAAAAAGAAACTACCATAAATTATTTGCACCACTACTTCTAGCTATATTACCTAGCTTTCGCGTCTATTTTAAGCGAATAATTGCGTCTATCCTTAATTTAAATAAATGTAACACTTAATAAAAAACCAAAAAAAAAGTTAAAAAAAACAGTTGTCCGCG]
[+] EMBL CD079535 [GGCCAAAAGTTCGGCACGAGGGGCGACTATATGAGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGAATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATATATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAACTGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAGAAAATATTTGGTAGGCTGTTCAGAGTGTTTGTGCACGTTTATATTCATCACTTTGATCGTTTGCATG AGATAGGAGCAGAAGCTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTCACTAACAGGATCATATAAATAAATTGCTCTCAAATTCTGTACATTATCTGAATGACCGGGCTGTCGCGAGAAGCAAAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTTTTGGTTCCTGATGTTTTGCTGCTTCTTCTTTGTACAAAAGAAACTGATTTTCTCATATGTCGAACATATATTTATGGTATTTTTCCTCTCTGCTTCTGTTCTT AAATAAGAAACTGTGCATTTCCCACTCATCCATACCATTATTCAACCGGNCACCAAAAATAATATTTTCCTTTATTTAGATTAATTATGTACGCCTTTTTGTCTCATTTTCTATGCATCTGTAAAGNTCGTTTAAC AGTGTATTCACTATTTTCGTACAGCAAATCTTGATTTT AAAAAANGAAACTACCATANNATA TTGCA CACTACTT TAGCTATA TA CTAGCTTTC CGTCTATTT AGCGAATA TGCGTCTATC TAATT AATAAtg ]
[-] EMBL CD195332 [ GTTTATATTCATCACTTTGATCGTTTGCATG AGATAGGAGCA CTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTCACTAACAGGATCATATAAATAAATTGCTCTCAAATTCTATACATTATCTGAATGACCGGGCTGTCGCGAGAAGCAAAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTTTTGGTTCCTGATGTTTTGCTGCTTCTTCTTTGTACAAAAAAAAATGATTTTTTCATATGTCGAACA AAATATATGG AATTTTCCTCTCTGCTTCTGTTCTTAAAATAAGAAA ]
[-] EMBL CD073802 [ ATATTCATCACTTTGATCG TTGCATGNAGATAGGAGCAGAAGCTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTCACTAACAGGATCATATAAATAAATTGCTCTCAAATTCTGTACATTATCTGAATGACCGGGCTGTCGCGAGAAGCAAAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTTTTGGTTCCTGATGTTTTGCTGCTTCTTCTTTGTACAAAAGAAACTGATTTTCTCATATGTCGAACATATATTTATGGTATTTTTCCTCTCTGCTTCTGTTCTTAAAATAAGAAACTGTGCATTTCCCACTCATCCATACCATTATTCAACCGGCAACCAAAAATAATATTTTCCTTTATTTAGATTAATTATGTACGCCTTTTTGTCTCATTTTCTATGCATCTGTAAAGTTCGTTTAACAAGTGTATTCACTATTTTCGTACAGCAAATCTTGATTTTAAAAAAAAGAAACTACCATAAATTATTTGCACCACTACTTCTAGCTATATTACCTAGCTTTCGCGTCTATTTTAAGCGAATAATTGCGTGTATCCTTAATTTAAATAAATGTAACACTTAATAAAAAACCAAAAAAAAAGTTAAAAAAAACAGTTGTCCGCG]
[-] EMBL CD076478 [ ACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTCACTAACAGGATCATATAAATAAATTGCTCTCAAATTCTGTACATTATCTGAATGACCGGGCTGTCGCGAGAAGCAAAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTTTTGGTTCCTGATGTTTTGCTGCTTCTTCTTTGTACAAAAGAAACTGATTTTCTCATATGTCGAACATATATTTATGGTATTTTTCCTCTCTGCTTCTGTTCTTAAAATAAGAAACTGTGCATTTCCCACTCATCCATACCATTATTCAACCGGCAACCAAAAATAATATTTTCCTTTATTTAGATTAATTATGTACGCCTTTTTGTCTCATTTTCTATGCATCTGTAAAGTTCGTTTAACAAGTGTATTCACTATTTTCGTACAGCAAATCTTGATTTTAAAAAAAAGAAACTACCATAAATTATTTGCACCACTACTTCTAGCTATATTACCTAGCTTTCGCGTCTATTTTAAGCGAATAATTGCGTCTATCCTTAATTTAAATAAATGTA ]
[-] EMBL CD076295 [ AACCAAAAGGATCTGTCACTAACAGGATCATATAAATAAATTGCTCTCAAATTCTGTACATTATCTGAATGACCGGGCTGTCGCGAGAAGCAAAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTTTTGGTTCCTGATGTTTTGCTGCTTCTTCTTTGTACAAAAGAAACTGATTTTCTCATATGTCGAACATATATTTATGGTATTTTTCCTCTCTGCTTCTGTTCTTAAAATAAGAAACTGTGCATTTCCCACTCATCCATACCATTATTCAACCGGCAACCAAAAATAATATTTTCCTTTATTTAGATTAATTATGTACGCCTTTTTGTCTCATTTTCTATGCATCTGTAAAGTTCGTTTAACAAGTGTATTCACTATTTTCGTACAGCAAATCTTGATTTTAAAAAAAAGAAACTACCATAAATTATTTGCACCACTACTTCTAGCTATATTACCTAGCTTTCGCGTCTATTTTAAGCGAATAATTGCGTCTATCCTTAATTTAAATAAAT ]
consensusID : consensus_9411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 615 fasta sequence
[AGGTGGATTGCAGTTCATGTTGTTGATTTTTATAACCGCATCAATCTCATTTATGGGACTATATGTGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGAATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATATATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAACTGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAGAAAATATTTGGTAGGCTGTTCAGAGTGTTTGTGCACGTTTATATTCATCACTTTGATCGTTTGCATGAGATAGGAGCAGAAGCTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTC-ACTAACAGG-ATCATATAAATAAATTGCTCTCAAAT-TCTGTACATTATCTGAATGACCGGGCTGTCGCGAGAAGCANAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTNTTGGTTCCTGATGTTTTGCTGCTTC]
[+] EMBL CD082894 [AGGTGGATTGCAGTTCATGTTGTTGATTTTTATAACCGCATCAATCTCATTTATGGGACTATATGTGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGAATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATATATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAACTGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAGAAAATATTTGGTAGGCTGTTCAGAGTGTTTGTGCACGTTTATATTCATCACTTTGATCGTTTGCATGAGATAGGAGCAGAAGCTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTC ACTAACAGG ATCATATAAATAAATTGCTCTCAAAT TCTGTACATTATCTGAATGACCGGGCTGTCGCGAGAAGCANAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTNTTGGTTCCTGATGTTTTGCTGCTTC]
[+] EMBL CD065655 [ GGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATATATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAACTGACATAGGTGTACCTTTTCCAAGGTGTTATATTTCAACTGTGAAGAAAATATTTGGTAGGCTGT ]
[-] EMBL CD199372 [ ATTTCGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTACCCCAAAGGATCTGTCTACTAACAGGCATCATATAAATAAATCGCTCTCAAATCTCTGT ]
consensusID : consensus_9411#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence
[CCCTCGNAGCCAANAATTCGGCACGAGGCGTCATTTGAGAATGGCCTTCAACGGCTTTAAAGAAATTTTCGTTAAGCAAAAGACTTTCCGTCCGAAGAAAAAGTTTGCACCAGATACAATACGCTATCATCTTCACAAGCACGCTGAGGCTTCACTAAGTTCGGGGATCGACCTCAGAGAAGCTGTTAAAAAGCCAGATGACGAAGAACTGAATGATTGGATTGCAGTTCATGGTGAATTGAAATATTGATTGTTATCTTCCCAGTTGTTGATTTTTATAACCGCATCAATCTCATTTATGGGACTATATGTGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGAATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATATATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAACTGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAGAAATATTTGGTAGGCTG]
[+] EMBL CD082705 [CCCTCGNAGCCAANAATTCGGCACGAGGCGTCATTTGAGAATGGCCTTCAACGGCTTTAAAGAAATTTTCGTTAAGCAAAAGACTTTCCGTCCGAAGAAAAAGTTTGCACCAGATACAATACGCTATCATCTTCACAAGCACGCTGAGGCTTCACTAAGTTCGGGGATCGACCTCAGAGAAGCTGTTAAAAAGCCAGATGACGAAGAACTGAATGATTGGATTGCAGTTCATGGTGAATTGAAATATTGATTGTTATCTTCCCAGTTGTTGATTTTTATAACCGCATCAATCTCATTTATGGGACTATATGTGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGAATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATATATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAACTGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAGAAATATTTGGTAGGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9411#0 ---------------------------------GGCCAAAAGTTCGGCACGAGGGGCGAC 27
consensus_9411#1 AGGTGGATTGCAGTTCATGTTGTTGATTTTTATAACCGCATCAATCTCATTTATGG-GAC 59
consensus_9411#2 --------------------------CCCTCGNAGCCAANAATTCGGCACGAGGCG---T 31
** ** *
consensus_9411#0 TATATGAGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGA 87
consensus_9411#1 TATATGTGATCGGTGCACTGAGCAGACATGCCCCACAATGTCTGGAGGCAAAAAGTTTGA 119
consensus_9411#2 CATTTGAGAATG--GCCTTCAACGGCTTTAAAGAAATTTTCGTTAAGCAAAAGACTTTCC 89
** ** ** * ** * * * * * * * * ** *** * ***
consensus_9411#0 ATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATA 147
consensus_9411#1 ATATCATTGGCGCGATAATATACATTATAAAAAGCCTACTCCACTACCAGCGCCCAAATA 179
consensus_9411#2 GTCCGAAGAAAAAGTTTGCACCAGATACAATACGCTATCATCTTCACAAGCACGCTGAGG 149
* * * * * ** ** * ** * * ** *** * * *
consensus_9411#0 TATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAAC 207
consensus_9411#1 TATTGATGAGTTGATGGACTGGGTTGATGCACAAATAAATGATCCATCACTTTTCCCAAC 239
consensus_9411#2 CTTCACTAAGTTCGGGGATCGACCT------CAGAGAAGCTGTTAAAAAG-----CCAGA 198
* * **** *** * * ** * ** * * * ***
consensus_9411#0 TGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAG-AAAATATTTGGTA 266
consensus_9411#1 TGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAG-AAAATATTTGGTA 298
consensus_9411#2 TGACGAAGA----ACTGAATGATTGGATTGCAGTTCA-TGGTGAATTGAAATATTGATTG 253
**** ** ** * * ** * **** ***** ******* *
consensus_9411#0 GGCTGTTCAGAGTGTTTGTGCACGTTTATATTC--ATCACTTTGATCGTTTGCATGAGAT 324
consensus_9411#1 GGCTGTTCAGAGTGTTTGTGCACGTTTATATTC--ATCACTTTGATCGTTTGCATGAGAT 356
consensus_9411#2 TTATCTTCCCAG---TTGTTGATTTTTATAACCGCATCAATCTCATTTATGGGACTATAT 310
* *** ** **** * ****** * **** * * ** * * * * **
consensus_9411#0 AGGAGCAGAAGCTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTT 384
consensus_9411#1 AGGAGCAGAAGCTCATGTCAACACTTGCTACAAGCACTTCTACTATTTTGTAACTTATTT 416
consensus_9411#2 GTGATCGGTGCACTGAGCAGACATGCCCCACAA---TGTCTGGAG----GCAAAAAGTTT 363
** * * * *** * **** *** * ** ***
consensus_9411#0 CGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTCA 444
consensus_9411#1 CGATCTTATTGATAAAAAGGAACTGGAGCCTCTGAATGATTTAACCCAAAGGATCTGTCA 476
consensus_9411#2 GAATATCATTGGCGCGAT---AATATACATTATAAAAAGCCTACTCCA------CTACCA 414
** * **** * * * * * * ** ** *** ** **
consensus_9411#0 CTAACAGGATCATATAAATAAATTGCTCT-CAAATTCTGTACATTATCTGAATGACCGGG 503
consensus_9411#1 CTAACAGGATCATATAAATAAATTGCTCT-CAAATTCTGTACATTATCTGAATGACCGGG 535
consensus_9411#2 GCGCCCAAAT-ATATTGATGAGTTGATGGACTGGGTTGATGCACAAA-TAAATGATCCAT 472
* ** **** ** * *** * * * * ** * * ***** *
consensus_9411#0 C---TGTCGCGAGAAGCAAAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTTTT 560
consensus_9411#1 C---TGTCGCGAGAAGCANAAATATTACCATCAACCTCTGTACTTTCCTCTCTGATTNTT 592
consensus_9411#2 CACTTTTCCCAACTGACATAGGTGTTCCTTTTCCAAGGTGTTATATTTCAACTGTGAAGA 532
* * ** * * ** * * ** * * *** * * ***
consensus_9411#0 GGTTCCTGATGTTTTGCTGCTTCTTCTTTGTACAAAAGAAACTGATTTTCTCATATGTCG 620
consensus_9411#1 GGTTCCTGATGTTTTGCTGCTTC------------------------------------- 615
consensus_9411#2 AATATTTGGTAGGCTG-------------------------------------------- 548
* ** * **
consensus_9411#0 AACATATATTTATGGTATTTTTCCTCTCTGCTTCTGTTCTTAAAATAAGAAACTGTGCAT 680
consensus_9411#1 ------------------------------------------------------------
consensus_9411#2 ------------------------------------------------------------
consensus_9411#0 TTCCCACTCATCCATACCATTATTCAACCGGCAACCAAAAATAATATTTTCCTTTATTTA 740
consensus_9411#1 ------------------------------------------------------------
consensus_9411#2 ------------------------------------------------------------
consensus_9411#0 GATTAATTATGTACGCCTTTTTGTCTCATTTTCTATGCATCTGTAAAGTTCGTTTAACAA 800
consensus_9411#1 ------------------------------------------------------------
consensus_9411#2 ------------------------------------------------------------
consensus_9411#0 GTGTATTCACTATTTTCGTACAGCAAATCTTGATTTTAAAAAAAAGAAACTACCATAAAT 860
consensus_9411#1 ------------------------------------------------------------
consensus_9411#2 ------------------------------------------------------------
consensus_9411#0 TATTTGCACCACTACTTCTAGCTATATTACCTAGCTTTCGCGTCTATTTTAAGCGAATAA 920
consensus_9411#1 ------------------------------------------------------------
consensus_9411#2 ------------------------------------------------------------
consensus_9411#0 TTGCGTCTATCCTTAATTTAAATAAATGTAACACTTAATAAAAAACCAAAAAAAAAGTTA 980
consensus_9411#1 ------------------------------------------------------------
consensus_9411#2 ------------------------------------------------------------
consensus_9411#0 AAAAAAACAGTTGTCCGCG 999
consensus_9411#1 -------------------
consensus_9411#2 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||