cluster # 9414

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Schistosoma mansoni
cluster # 9414 cluster # 9414 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9414#0 length = 640 sequences # 4

consensus_9414#1 length = 410 sequences # 5

consensusID : consensus_9414#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 640
fasta sequence

                              [CCTCCGAGGCCAANAATTCGGCACGAGG--AGTCACCAAACGTCGGATATACAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGAGGGTGCAGTAGCCTTCTACAAACGTTTCGGTTNTGAAATAACTGGAGAAGTTAGTGATTACTACCGNCGTATTCATCCCCAAACTGCCTACGTGCTCGAA]

[+] EMBL CD080502             [CCTCCGAGGCCAANAATTCGGCACGAGG  AGTCACCAAACGTCGGATATACAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGAGGGTGCAGTAGCCTTCTACAAACGTTTCGGTTNTGAAATAACTGGAGAAGTTAGTGATTACTACCGNCGTATTCATCCCCAAACTGCCTACGTGCTCGAA]
[+] EMBL CD084007             [                       CGAGGCCAGTCACCAAACGTCGGATAT CAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCA                                                                                                                                                                                                               ]
[+] EMBL AI976097             [                                TCACCAAACGTCGGATATACAACCTTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTT                                                                                                                                                        ]
[+] EMBL CD194833             [                                                                                                                                                                                                                                                                                                                                  GGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAAGAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGAGGGTGCAGTAGCCTTCTACAAACGTTTCGGTTTTGAAATAACTGGAGAAGTTAGTGATTACTACCGCCGTATTCATCCCCAAACTGCCTACGTGCTCGAA]




>consensus_9414#0
CCTCCGAGGCCAANAATTCGGCACGAGGAGTCACCAAACGTCGGATATACAACCTTAGAC
GTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAG
GAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAA
CATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATT
TTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGT
CGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTAC
GGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGG
ATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAA
GAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGA
GGGTGCAGTAGCCTTCTACAAACGTTTCGGTTNTGAAATAACTGGAGAAGTTAGTGATTA
CTACCGNCGTATTCATCCCCAAACTGCCTACGTGCTCGAA

consensusID : consensus_9414#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 410
fasta sequence

                              [TCGCGCCTAAGTTGACCAGTCACCAAACGTCGGATATACAACC-TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA-AAAAGGTAGGAGTACTAATGAGAG-CAAAATATACAAAAAGATCGAGCT-CGGACAGCTTACTCCT-CATAACATCAAGCAGTTCAGATTGATA-AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA-ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGA]

[-] EMBL CD183204             [TCGCGCCTAAGTTGACCAGTCACCAAACGTCGGATATACAACC TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCT CGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGA]
[-] EMBL CD157245             [                               GGATATACGACCTTTTGACGTGGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGTACAGTATAGGTAGGAGTACTAATGAGAGCCAGGAGATACGGTAAGGTCGAGCT CGGACAGCTTACTCCTGCATAACATCAAGCAGTTCAGAGTGATATAATCAAACTGTTGTCCCAGTCACATATACAGAGAAATTTAATAGTGATGTTCGGAAAAATAGTAAGATGTGCAGACTGGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAGTGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACATATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTA           ]
[-] EMBL CD157297             [                               GGATATACAACC TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCTCCGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTGATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGACATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTA           ]
[-] EMBL CD157268             [                               GGATATACAACC TTAGACGTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACT AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCT CGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACA ATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTA           ]
[+] EMBL CD134613             [                                                              GCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACA AAAAGGTAGGAGTACTAATGAGAG CAAAATATACAAAAAGATCGAGCT CGGACAGCTTACTCCT CATAACATCAAGCAGTTCAGATTGATA AATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGAT                                                          ]




>consensus_9414#1
TCGCGCCTAAGTTGACCAGTCACCAAACGTCGGATATACAACCTTAGACGTTGCCAGCGA
TGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAGGAGTACTAATG
AGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAACATCAAGCAGT
TCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATTTTATAGTGATG
TTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGTCGTCGGAGCTG
TTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTACGGATGACAATA
ACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9414#0      CCTCCGAGGCCAANAATTCGGCACGAGGAGTCACCAAACGTCGGATATACAACCTTAGAC 60
consensus_9414#1      ----------TCGCGCCTAAGT-TGACCAGTCACCAAACGTCGGATATACAACCTTAGAC 49
                                       *  *   **  ********************************

consensus_9414#0      GTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAG 120
consensus_9414#1      GTTGCCAGCGATGCTTGCTGTACATTCAGAACAAAGTGGTACAGTCGAACAAAAAGGTAG 109
                      ************************************************************

consensus_9414#0      GAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAA 180
consensus_9414#1      GAGTACTAATGAGAGCAAAATATACAAAAAGATCGAGCTCGGACAGCTTACTCCTCATAA 169
                      ************************************************************

consensus_9414#0      CATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATT 240
consensus_9414#1      CATCAAGCAGTTCAGATTGATAAATCAAACTGTTTTCCCAGTCACATATACAGAGAAATT 229
                      ************************************************************

consensus_9414#0      TTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGT 300
consensus_9414#1      TTATAGTGATGTTCTGAAAAATAGTAAGATGTGCAGACTTGCTTACTTCAACGATATCGT 289
                      ************************************************************

consensus_9414#0      CGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTAC 360
consensus_9414#1      CGTCGGAGCTGTTAGTTACCGGATAGAAAATGTTGTGGTAAAGAATGTCGATACAGCTAC 349
                      ************************************************************

consensus_9414#0      GGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGG 420
consensus_9414#1      GGATGACAATAACGGCCAAGCTAATCAAACCGTCAAGAAGTGTTATATTATGACCTTAGG 409
                      ************************************************************

consensus_9414#0      ATGTCTTGCACCATACAGAGGCTACGGTGTTGGTACGCTTATGTTAAAACATGTCATCAA 480
consensus_9414#1      A----------------------------------------------------------- 410
                      *                                                           

consensus_9414#0      GAGCTGTTTAAAGCACGGTGGGATTAAAAGTATTTATCTGCATGTTCATGTTGGTAATGA 540
consensus_9414#1      ------------------------------------------------------------
                                                                                  

consensus_9414#0      GGGTGCAGTAGCCTTCTACAAACGTTTCGGTTNTGAAATAACTGGAGAAGTTAGTGATTA 600
consensus_9414#1      ------------------------------------------------------------
                                                                                  

consensus_9414#0      CTACCGNCGTATTCATCCCCAAACTGCCTACGTGCTCGAA 640
consensus_9414#1      ----------------------------------------