These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9416#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1084 fasta sequence [GAGGGCCANAATTCGGCACGAG-GTGTGCACATGTTCGTGCACGTTAGCAATCTATGTGTTTTCGAGCTCTTTGGGAAATAATTGCGTGACGTAAACCTGTTTTACACTGAAATTAATGCCCTCGAAATTGTGTCACCTGCTTACAAACTTCTATCCTACTATCATGAATAATAAAATTATTAATGTGAAAGATGCAAGTTTAAATCTTAATGCAATCGTTCAGTTAATCAGTCAAAATGATGGTGTAGTAGCACTTCCAACAGACACTATTTATGGATTAGCTTGTTCCGTTTTTAATACTGAAGCAATTGAACGAATACGTCGTATTAAAGGTCGATCAGAGACTAAACCTATGGCTATATGCTTAGATCAGGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTTTTGTGATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTTTTACACTCCCCCCCCTTTGTCTTCAAATCAAGTTATTAGTATTATCATTATTACCCAACCCTATCGTTCACCTCACTCAGGGATTGTTGAAGATTCCTTTTTTACTCGGTTGTTATGAAATAACACAATTATGTTGTTGTATATGTGTGACCATACGATGATTCTATCATTATTATAAACAGTGATGCTACAATCCATCCACTCATCAAATGTGATCATCTTCAGTGTCGGTGTTCTGTTCTGTAATACGTCACTTACCTGTTGTTTTATATTTTAATTGCAATGAGAGTACTTATTATTTTTTTTGGAAAAGTTTAAAAACGTTCA] [+] EMBL CD080678 [GAGGGCCANAATTCGGCACGAG GTGTGCACATGTTCGTGCACGTTAGCAATCTATGTGTTTTCGAGCTCTTTGGGAAATAATTGCGTGACGTAAACCTGTTTTACACTGAAATTAATGCCCTCGAAATTGTGTCACCTGCTTACAAACTTCTATCCTACTATCATGAATAATAAAATTATTAATGTGAAAGATGCAAGTTTAAATCTTAATGCAATCGTTCAGTTAATCAGTCAAAATGATGGTGTAGTAGCACTTCCAACAGACACTATTTATGGATTAGCTTGTTCCGTTTTTAATACTGAAGCAATTGAACGAATACGTCGTATTAAAGGTCGATCAGAGACTAAACCTATGGCTATATGCTTAGATCAGGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTTTTGTGATGTACCCTGTTTTT ATCATCTAATTCTC ] [+] EMBL CD080679 [ gGGCACGAGAGCGTGCACATGTTCGTGCACGTTAGCAATCTATGTGTTTTCGAGCTCTTTGGGAAATAATTGCGTGACCTAAACCTGTTTTACACTGAAATTAATGCCCTCGAAATTGTGTCACCTGCTTACAAACTTCTATCCTACTATCATGAATAATAAAATTATTAATGTGAAAGATGCAAGTTTAAATCTTAATGCAATCGTTCAGTTAATCAGTCAAAATGATGGTGTAGTAGCACTTCCAACAGACACTATTTATGGATTAGCTTGTTCCGTTTTTAATACTGAAGCAATTGAACGAATACGTCGTATTAAAGGTCGATCAGAGACTAAACCTATGGCTATATGCTTAGATCAGGAATTGTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCACTGCATACTATGCAACGGTAGCCATATTACAAGGTC ] [+] EMBL CD158016 [ ATGCAAGTTTAAATCTTAATGCAATCGTTCAGTTAATCAGTCAAAATGATGGTGTAGTAGCACTTCCAACAGACACTATTTATGGATTAGCTTGTTCCGTTTTTAATACTGAAGCAATTGAACGAATACGTCGTATTAAAGGTCGATCAGAGACTAAACCTATGGCTATATGCTTAGATCAGGAATTTTCCGAAATTTGGTCATCCA ] [+] EMBL AI977525 [ AATCATCAATGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTTTTGTGATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTTTTACACTCCCCCCCCTTTGTCTTCAAATCAAGTTATTAGTATTATCATTATTACCCAACCCTATCGTTCACCTCACTCAGGGATTGTTGAAGATTCCTTTTTTACTCGGTTGTTATGAAATAACACAATTATGTTGTTGTATATGTGTGACCATACGATGATTCTATCATTATTATAAACAGTGATGCTACAATCCATCCACTCATCAAATGTGATCATCTTCAGTGTCGGTGTTCTGTTCTGTAAT ] [-] EMBL CD074036 [ TGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTTTTGTGATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTTTTACACTCCCCCCC TTGTCTTCAAATCAAGTTATTAGTATTATCATTATTACCCAACCCTATCGTTCACCTCACTCAGGGATTGTTGAAGATTCCTTTTTTACTCGGTTGTTATGAAATAACACAATTATGTTGTTGTATATGTGTGACCATACGATGATTCTATCATTATTATAAACAGTGATGCTACAATCCATCCACTCATCAAATGTGATCATCTTCAGTGTCGGTGTTCTGTTCTGTAATACGTCACTTACCTGTTGTTTTATATTTTAATTGCAATGAGAGTACTTATTATTTTTTTTGGAAAAGTTTAAAAACGTTCA] [-] EMBL CD074601 [ TCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTTTTGTGATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTTTTACACTCCCCCCCCTTTGTCTTCAAGTCAAGTTATTAGTATTATCATTATTACCCAACCCTATCGTTCACCTCACTCAGGGATTGTTGAAGATTCCTTTTTTACTCGGTTGTTATGAAATAACACAATTATGTTGTTGTATATGTGTGACCATACGATGATTCTATCATTATTATAAACAGTGATGCTACAATCCATCCACTCATCAAATGTGATCATCTTCAGTGTCGGTGTTCTGTTCTGTAATACGTCACTTACCTGTTGTTTTATATTTTAATTGCAATGAGAGTACTTATTATTTTTTTTGAAAAAGTTTAAAAA ] consensusID : consensus_9416#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 764 fasta sequence [CGAGGCCAANAATTTGGCACGAGGACATCTTCTCCCTGGTCCTGTCACTGTTCTATTACCACGTTTTTCTGATAGACTTCAGGATCCATTGAGCACTCGTTTGTTAAACTTAGGCGACAAGCGTGTTGGTATTCGAATACCGGATTCTGGTTTTATACGTAAACTTATATCAGCTTTGAATGAACAAACTAGATCCTCATCAATTATTGGCAATAACGTTGAACATTCTAGCGGTTGTGATGAGCGTGATAGTATCAGTATTAGTGGTGGTCACCCATTAGTATTAACCTCAGCAAATTTAAGTGGACAACCGTCAGCAATTCAAATCGAAGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTNTTGTGATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTNNTACACTCCCCCCCTTGTCTTCAAATCAAGTTATTAGTATTATCATTAT] [+] EMBL CD079778 [CGAGGCCAANAATTTGGCACGAGGACATCTTCTCCCTGGTCCTGTCACTGTTCTATTACCACGTTTTTCTGATAGACTTCAGGATCCATTGAGCACTCGTTTGTTAAACTTAGGCGACAAGCGTGTTGGTATTCGAATACCGGATTCTGGTTTTATACGTAAACTTATATCAGCTTTGAATGAACAAACTAGATCCTCATCAATTATTGGCAATAACGTTGAACATTCTAGCGGTTGTGATGAGCGTGATAGTATCAGTATTAGTGGTGGTCACCCATTAGTATTAACCTCAGCAAATTTAAGTGGACAACCGTCAGCAATTCAAATCGAAGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTNTTGTGATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTNNT ] [+] EMBL CD114271 [ TAGTATTAACCTCAGCAAATTTAAGTGGACAACCGTCAGCAATTCAAATCGAAGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACTATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCATACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTTTCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTTGCATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTTTTGTGATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTTTTACACTCCCCCCCTTGTCTTCAAATCAAGTTATTAGTATTATCATTAT] consensusID : consensus_9416#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [CCAAAATACACTCTACGTCTGACCACCACTATATACTACTTATATGGGTATAAGTAGGCCACACCACAATAGTAGTATCTTGTTTAGCTCTCTTAAGACAATTCTAAGCTCATTCGTTTTATTATATTATGATACGTTTTCTTTCTTTATATTCAGGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCA] [+] EMBL CD078214 [CCAAAATACACTCTACGTCTGACCACCACTATATACTACTTATATGGGTATAAGTAGGCCACACCACAATAGTAGTATCTTGTTTAGCTCTCTTAAGACAATTCTAAGCTCATTCGTTTTATTATATTATGATACGTTTTCTTTCTTTATATTCAGGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGTGGTCCTATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9416#0 -GAGGGCCANAATTCGGCACGAGGTGTGCACATGTTCGTGCACGTTAGCAATCTATGTGT 59 consensus_9416#1 CGAGGCCAANAATTTGGCACGAGGACATCTTCTCCCTGGTCCTGTCACTGTTCTA----T 56 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 TTTCGAGCTCTTTGGGAAATAATTGCGTGACGTAAACCTGTTTTACACTGAAATTAATGC 119 consensus_9416#1 TACCACGTTTTTCTGATAGACTTCAGGATCCATTGAGCACTCGTTTGTTAAACTTAG-GC 115 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 CCTCGAAATTGTGTCACCTGCTTACAAACTTCTATCCTACTATCATGAATAATAAAATTA 179 consensus_9416#1 GACAAGCGTGTTGGTATTCGAATACCGG-----ATTCTGGTTTTATACGTAAACTTAT-A 169 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 TTAATGTGAAAGATGCAAGTTTAAATCTTAATGCAATCGTTCAGTTAATCAGTCAAAATG 239 consensus_9416#1 TCAGCTTTGAATGAACAAACTAGATCCTCA--------------TCAATTATTGGCAATA 215 consensus_9416#2 CCAAAATACACTCTAC--GTCTGACCACCA--------------CTATATACTACTTATA 44 * * * * * * * * * ** consensus_9416#0 ATGGTGTAGTAGCACTTCCAACAGACACTATTTATGGATTAGCTTGTTCCGTTTTTAATA 299 consensus_9416#1 ACGTTG----AACA-TTCTAGCGGTTG----TGATGAGCGTGATAGTATCAGTATTAGTG 266 consensus_9416#2 TGGGTATA--AGTAGGCCACACCACAA----TAGTAGTATCTTGTTTAGCTCTCTTAAGA 98 * * * * * * * * * * * *** consensus_9416#0 CTGAAGCAATTGAACGAATACGTCGTATTAAAGGTCGATCAGAGACTAAACCTATGGCTA 359 consensus_9416#1 GTGGT-CACCCATTAGTATTAACCTCAGCAAATTTAAGT---GGAC--AACCGTCAGCAA 320 consensus_9416#2 CAATT----CTAAGCTCATTCGTTTTATTATATTATGAT-----------ACGTTTTCTT 143 ** * * * * * * consensus_9416#0 TATGCTTAGATC-AGGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGT 418 consensus_9416#1 T----TCAAATCGAAGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGT 376 consensus_9416#2 TCT--TTATATTCAGGAATTTTCCGAAATTTGGTCATCCATCGATCTAATCATCAATGGT 201 * * * ** * ********************************************* consensus_9416#0 GGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACT 478 consensus_9416#1 GGTCCTATTCAATCTGATATATTCTCAGGAAACTCCGATTGTAGCCGAGCTGGTTCAACT 436 consensus_9416#2 GGTCCTATTCA------------------------------------------------- 212 *********** consensus_9416#0 ATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCA 538 consensus_9416#1 ATTATTGACTTGTGCAATTGTGACAAATCTGTTTATTCTGTAGTACGAAATGGCAGTGCA 496 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 TACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTT 598 consensus_9416#1 TACAATGCAACGGTAGCCATATTAGAAGGTCGTTACAATCTTTCTCTTTCCGACAATTTT 556 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 TCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTT 658 consensus_9416#1 TCCAATACAAATAATTGAAAACTAATTCCATTTCTTAAAGATGTTTCAGATGAATCATTT 616 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 GAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTTTTGT 718 consensus_9416#1 GAATTTTCCCATCTATTCTTCTTCAATTCTGTTGTAGAATACTAATATTATAATTNTTGT 676 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 GATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTTTTACACTCCCCCCCCTTTGTC 778 consensus_9416#1 GATGTACCCTGTTTTTAATCATCTAATTCTCCTACGTTNNTACACTCCCCCCC--TTGTC 734 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 TTCAAATCAAGTTATTAGTATTATCATTATTACCCAACCCTATCGTTCACCTCACTCAGG 838 consensus_9416#1 TTCAAATCAAGTTATTAGTATTATCATTAT------------------------------ 764 consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 GATTGTTGAAGATTCCTTTTTTACTCGGTTGTTATGAAATAACACAATTATGTTGTTGTA 898 consensus_9416#1 ------------------------------------------------------------ consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 TATGTGTGACCATACGATGATTCTATCATTATTATAAACAGTGATGCTACAATCCATCCA 958 consensus_9416#1 ------------------------------------------------------------ consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 CTCATCAAATGTGATCATCTTCAGTGTCGGTGTTCTGTTCTGTAATACGTCACTTACCTG 1018 consensus_9416#1 ------------------------------------------------------------ consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 TTGTTTTATATTTTAATTGCAATGAGAGTACTTATTATTTTTTTTGGAAAAGTTTAAAAA 1078 consensus_9416#1 ------------------------------------------------------------ consensus_9416#2 ------------------------------------------------------------ consensus_9416#0 CGTTCA 1084 consensus_9416#1 ------ consensus_9416#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||