cluster # 9419

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Schistosoma mansoni
cluster # 9419 cluster # 9419 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9419#0 length = 813 sequences # 5

consensus_9419#1 length = 675 sequences # 3
consensus_9419#2 length = 455 sequences # 1

consensusID : consensus_9419#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 813
fasta sequence

                              [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGGACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTCCTCGTGCCGAATTC]

[+] EMBL CD074396             [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGGACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATG                                                                                                                                           ]
[+] EMBL CD076205             [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGGACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGT                                                                                                                                                                                                                                                           ]
[+] EMBL SM145                [TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATACTTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAACACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTGAATCAGCTAAGGCTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD080484             [                                                                                                                                                                       nATCCAACCGGTGAATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGNACGTTCATTTCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTCCTCGTGCCGAATTC]
[+] EMBL CD128825             [                                                                                                                                                                                                                                                   CCATCTAATTTAAATATTGATTCAATCACCTGAATTACTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCAC                                                                                                                                                          ]




>consensus_9419#0
TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATAC
TTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAA
CACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTG
AATCAGCTAAGGCTTTCGACCAAGGCGTCGTGCATTGAATCCGCGACAAGGACGTTCATT
TCACCATCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTTTCTGA
CCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGG
TTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCA
ACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACG
AGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAAT
TCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATT
ATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACG
GAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGA
GTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACA
GGAAAGTTTTCTGGAAGTCCTCGTGCCGAATTC

consensusID : consensus_9419#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 675
fasta sequence

                              [AAGCNTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTCGGAAATTGCCTCGTGCCGAATTNTTGGCTCGTAG]

[-] EMBL CD082611             [AAGCNTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTCGGAAATTGCCTCGTGCCGAATTNTTGGCTCGTA ]
[-] EMBL CD077989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTC       GCCTCGTGCCGAATTTTTGGCcgcgag]
[-] EMBL CD162834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCAATCGTTGTGTCAATGACAGGAAAGTTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACG                                               ]




>consensus_9419#1
AAGCNTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACA
GTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTA
ACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGA
TGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACA
GTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAGCAATTATATTC
CCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTGGCACGGAATTT
GTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGACCATGAGTATTG
CCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAATGACAGGAAAG
TTTTCTGGAAGTTCATCTCTGAAAACACTGTTGGAGTTTTCGGAACTCCCAACAGAAACC
AAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCACCCTCAAAATGA
GTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTCGGAAATTGCCTCGTGCCGA
ATTNTTGGCTCGTAG

consensusID : consensus_9419#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [AAAAGTAAGTCATAATTCATATGAGTTGACGAAACAATATAAACCACAATTATTTAACGACTGTCAATAAGTAGCTTTTATGTTAGCTGCAATACAATGAATATCGCATTGTTAACGTAAAAAGTTTTTGAAGTTAAAACGGATAAGCATACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCCTAAATATTACAGGAATTAGTCTT]

[+] EMBL CD169399             [AAAAGTAAGTCATAATTCATATGAGTTGACGAAACAATATAAACCACAATTATTTAACGACTGTCAATAAGTAGCTTTTATGTTAGCTGCAATACAATGAATATCGCATTGTTAACGTAAAAAGTTTTTGAAGTTAAAACGGATAAGCATACCTGAATTTCTGTGCTTGTCGTTTTCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAATTCCACAGTTTCCTAAATATTACAGGAATTAGTCTT]




>consensus_9419#2
AAAAGTAAGTCATAATTCATATGAGTTGACGAAACAATATAAACCACAATTATTTAACGA
CTGTCAATAAGTAGCTTTTATGTTAGCTGCAATACAATGAATATCGCATTGTTAACGTAA
AAAGTTTTTGAAGTTAAAACGGATAAGCATACCTGAATTTCTGTGCTTGTCGTTTTCTGA
CCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTCCTTGG
TTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATTCGTCA
ACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTCCGACG
AGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGACCAAT
TCCACAGTTTCCTAAATATTACAGGAATTAGTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9419#0      TCATATCAGTCTAATTGTGTAAAATTGATTATACAAAGAGTATATGTTCATTTTACATAC 60
consensus_9419#1      ------------------------------------------------------------
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      TTTGGGATGAAAAGTTACCAATTTTTGAAGTTTGAAAATAAATGTACACGAATGAAGGAA 120
consensus_9419#1      ------------------------------------------------------------
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      CACGCAACAGGATAATATTCTTCACACTAAATGAGGCATCTGTATAAAATCCAACCGGTG 180
consensus_9419#1      ------------------------------------------------------------
consensus_9419#2      -----AAAAGTAAGTCATAATTCATATGAGTTGACGAAACAATATAAACCACAATTATTT 55
                                                                                  

consensus_9419#0      AATCAGCTAAGGCTTTCGACCAAGGCGTCG--TGCATTGAATCCGCGACAAGGACGTTCA 238
consensus_9419#1      ------------------------------------------------------------
consensus_9419#2      AACGACTGTCAATAAGTAGCTTTTATGTTAGCTGCAATACAATGAATATCGCATTGTTAA 115
                                                                                  

consensus_9419#0      TTTCACCA---TCTAATTTAAATATTGATTCAATCACCTGAATTTCTGTGCTTGTCGTTT 295
consensus_9419#1      ------------------------------------------------------------
consensus_9419#2      CGTAAAAAGTTTTTGAAGTTAAAACGGATAAGCATACCTGAATTTCTGTGCTTGTCGTTT 175
                                                                                  

consensus_9419#0      TCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTC 355
consensus_9419#1      -----------AAGCNTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTC 49
consensus_9419#2      TCTGACCACAAAAGCCTGCCCAATCGTTGACCACAAGTCCAGCTGCAATAAGTGTACTTC 235
                                 **** ********************************************

consensus_9419#0      CTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATT 415
consensus_9419#1      CTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATT 109
consensus_9419#2      CTTGGTTTACAGTCCCAGCAGTTAGTGGAAGATGAAGAAGACTACTCAACTGATCTAATT 295
                      ************************************************************

consensus_9419#0      CGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTC 475
consensus_9419#1      CGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTC 169
consensus_9419#2      CGTCAACTGTAACTTTAGGATGAACAAGTCCACCTTGGTTTGTCAGCACGCAATATGTTC 355
                      ************************************************************

consensus_9419#0      CGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGA 535
consensus_9419#1      CGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGA 229
consensus_9419#2      CGACGAGAAGATGATTTGCAATGACTTCACAAAAAACCTCAACATTCAACACGTCGCTGA 415
                      ************************************************************

consensus_9419#0      CCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAG 595
consensus_9419#1      CCAATTCCACAGTTTCTTTATCTAGGTCTGGACGAACGAGGGCGACGTAATCATTGCAAG 289
consensus_9419#2      CCAATTCCACAGTTTCCTAA----ATATTACAGGAATTAGTCTT---------------- 455
                      **************** * *        *  * ***  **                    

consensus_9419#0      CAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTG 655
consensus_9419#1      CAATTATATTCCCAAGAGCTGATAGGCGTTCTTCAACTCGCACTACCTTTACTTTGTCTG 349
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      GCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGAC 715
consensus_9419#1      GCACGGAATTTGTCAAATGCATCAGTTCTTGATCAGTTGTTGAGTGTGGAACAAGGAGAC 409
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      CATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAA 775
consensus_9419#1      CATGAGTATTGCCTACAGTCATTCTTCCAACAGCCCGAATACCAGCAATCGTTGTGTCAA 469
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      TGACAGGAAAGTTTTCTGGAAGTCCTCGTGCCGAATTC---------------------- 813
consensus_9419#1      TGACAGGAAAGTTTTCTGGAAGTTCATCT-CTGAAAACACTGTTGGAGTTTTCGGAACTC 528
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      ------------------------------------------------------------
consensus_9419#1      CCAACAGAAACCAAGCAGTAGTTATTTGTAAGTTTGGAAAACACACCAATATCACTAGCA 588
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      ------------------------------------------------------------
consensus_9419#1      CCCTCAAAATGAGTACGTGAAGCCATTGTACAACAACACGCCAGAAGGAATTCGGAAATT 648
consensus_9419#2      ------------------------------------------------------------
                                                                                  

consensus_9419#0      ---------------------------
consensus_9419#1      GCCTCGTGCCGAATTNTTGGCTCGTAG 675
consensus_9419#2      ---------------------------