cluster # 9422

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9422 cluster # 9422 Sequences # 9 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9422#0 length = 1022 sequences # 1
consensus_9422#1 length = 901 sequences # 1
consensus_9422#2 length = 726 sequences # 3

consensus_9422#3 length = 628 sequences # 1
consensus_9422#4 length = 310 sequences # 2
consensus_9422#5 length = 269 sequences # 1

consensusID : consensus_9422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1022
fasta sequence

                              [GAGCCAGATTCGGCACGAGGCCACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAGAATAGCTCATCGCAGAGAATCAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAGTAAGTTACCCTATCCACATAGTCCAAAGCGTCAATCACTGGAACTAATGGAATGGATGCAAATTTCACTTTTCACAGTAACCTATGTTTCATTTCAAGTGCATGGGTAAGCCTCTATACTTGGAGGACCTGTGTGGTTTACTAATTAGTGGATTCAGTTCGTGAATTTCCTTTTCAGGGACGTTTCGGTTATTCCGATCTATACTAAAAGTACATCATAAACTATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAATCAGTTTCTGCAGATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCCAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAAACACAACAGTCATCTGTTTACCTGAGACAGNNATATATAGTGACANGGATATTTATATGCACACGAATGTTNACATACGANNAGCTACAGNCCCTGAAATACCCTAGNTACGTCTATGTGAACATGGGTTGCNNGCTGTGCTANGCGCTATGAATGTGCTAAACAGGCCCGTCCTTATGTAGNTNATCCTGGTATAAAGCTATTATCGCATTCCATCACTTTTCACTTAACTGNACATTAGACTTTACATAATTGATGATCTTGATTCTGNAAAATTTAC]

[+] EMBL CD079502             [GAGCCAGATTCGGCACGAGGCCACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAGAATAGCTCATCGCAGAGAATCAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAGTAAGTTACCCTATCCACATAGTCCAAAGCGTCAATCACTGGAACTAATGGAATGGATGCAAATTTCACTTTTCACAGTAACCTATGTTTCATTTCAAGTGCATGGGTAAGCCTCTATACTTGGAGGACCTGTGTGGTTTACTAATTAGTGGATTCAGTTCGTGAATTTCCTTTTCAGGGACGTTTCGGTTATTCCGATCTATACTAAAAGTACATCATAAACTATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAATCAGTTTCTGCAGATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCCAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAAACACAACAGTCATCTGTTTACCTGAGACAGNNATATATAGTGACANGGATATTTATATGCACACGAATGTTNACATACGANNAGCTACAGNCCCTGAAATACCCTAGNTACGTCTATGTGAACATGGGTTGCNNGCTGTGCTANGCGCTATGAATGTGCTAAACAGGCCCGTCCTTATGTAGNTNATCCTGGTATAAAGCTATTATCGCATTCCATCACTTTTCACTTAACTGNACATTAGACTTTACATAATTGATGATCTTGATTCTGNAAAATTTAC]




>consensus_9422#0
GAGCCAGATTCGGCACGAGGCCACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAG
AATAGCTCATCGCAGAGAATCAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGT
GGAACGTTTGCTCAAAGTAAGTTACCCTATCCACATAGTCCAAAGCGTCAATCACTGGAA
CTAATGGAATGGATGCAAATTTCACTTTTCACAGTAACCTATGTTTCATTTCAAGTGCAT
GGGTAAGCCTCTATACTTGGAGGACCTGTGTGGTTTACTAATTAGTGGATTCAGTTCGTG
AATTTCCTTTTCAGGGACGTTTCGGTTATTCCGATCTATACTAAAAGTACATCATAAACT
ATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAATCAGTTTCTGCAG
ATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTG
GTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAG
GGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAA
GGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAAC
ATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCCAAGCTGGATACATTCGCTTT
GTATCTTCGTCTCGTTTATCAAACACAACAGTCATCTGTTTACCTGAGACAGNNATATAT
AGTGACANGGATATTTATATGCACACGAATGTTNACATACGANNAGCTACAGNCCCTGAA
ATACCCTAGNTACGTCTATGTGAACATGGGTTGCNNGCTGTGCTANGCGCTATGAATGTG
CTAAACAGGCCCGTCCTTATGTAGNTNATCCTGGTATAAAGCTATTATCGCATTCCATCA
CTTTTCACTTAACTGNACATTAGACTTTACATAATTGATGATCTTGATTCTGNAAAATTT
AC

consensusID : consensus_9422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 901
fasta sequence

                              [ATGGTGATGATTCTGAAGATGATGAAGTGGAATATAGACCTCCAAAGTTGTTAACTGCACGACAGATAAGTTTACAATCACAGAGAATCGCTGTTCCAACTGATATTAAGGACATGAAGCAGTCTACAGCTCATTCCAAACTAATTAGTCTAGAGTGCTTGAATCCAACTAAACCAGCTCCAACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAGAATAGCTCATCGCAGAGAATCAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGANNTATATAGTGACAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGNCCCTGAAATACCNTAGNTACGTCTATGTGACATGGGTTGCGGCTGTGCTANGCGCTATGAATGTGCNTAAACAGGCCGTNCTTATGTAGNTNATCCTGGTATAAAGCTAATTATCAGCATTCCATCACTATTTCACTTAACTGAGCATTAGACTTTACATAATNTGATGAATCTGATTCTAGTAAAATTTTA]

[+] EMBL CD079851             [ATGGTGATGATTCTGAAGATGATGAAGTGGAATATAGACCTCCAAAGTTGTTAACTGCACGACAGATAAGTTTACAATCACAGAGAATCGCTGTTCCAACTGATATTAAGGACATGAAGCAGTCTACAGCTCATTCCAAACTAATTAGTCTAGAGTGCTTGAATCCAACTAAACCAGCTCCAACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAGAATAGCTCATCGCAGAGAATCAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGANNTATATAGTGACAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGNCCCTGAAATACCNTAGNTACGTCTATGTGACATGGGTTGCGGCTGTGCTANGCGCTATGAATGTGCNTAAACAGGCCGTNCTTATGTAGNTNATCCTGGTATAAAGCTAATTATCAGCATTCCATCACTATTTCACTTAACTGAGCATTAGACTTTACATAATNTGATGAATCTGATTCTAGTAAAATTTTA]




>consensus_9422#1
ATGGTGATGATTCTGAAGATGATGAAGTGGAATATAGACCTCCAAAGTTGTTAACTGCAC
GACAGATAAGTTTACAATCACAGAGAATCGCTGTTCCAACTGATATTAAGGACATGAAGC
AGTCTACAGCTCATTCCAAACTAATTAGTCTAGAGTGCTTGAATCCAACTAAACCAGCTC
CAACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAGAATAGCTCATCGCAGAGAAT
CAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAATCA
ACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTGGTAA
ACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGG
ATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTA
TGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGT
CTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTAT
CTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGANNTATATAGTG
ACAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGNCCCTGAAATAC
CNTAGNTACGTCTATGTGACATGGGTTGCGGCTGTGCTANGCGCTATGAATGTGCNTAAA
CAGGCCGTNCTTATGTAGNTNATCCTGGTATAAAGCTAATTATCAGCATTCCATCACTAT
TTCACTTAACTGAGCATTAGACTTTACATAATNTGATGAATCTGATTCTAGTAAAATTTT
A

consensusID : consensus_9422#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 726
fasta sequence

                              [TACATCATAAACTATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAATCAGTTTCTGCAGATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGATAATAATAGTGACAAGGATATTTATATGCAC-ACGAATGTTTACATACGAAAAGCTACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGAATCTTGATTTCTAGTAAAAAATATATACCTTATTAAAGTAAAAAAAAAAAAAAAAAAA]

[-] EMBL CD073771             [TACATCATAAACTATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAATCAGTTTCTGCAGATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGATAATAATAGTGACAAGGATATTTATATGCAC ACGAATGTTTACATACGAAAAGCTACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGAATCTTGATTTCTAGTAAAAAATATATACCT                            ]
[-] EMBL CD074816             [                                                                                                         AGGTAGAGGTCTTCGGAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGATAATAATAGTGACAAGGATATTTATATGCAC ACGAATGTTTACATACGAAAAGCTACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGAATCTTGATTTCTAGTAAAAAATATATACCT                            ]
[-] EMBL AI395268             [                                                                                                                                                                                                                                                                ATG ACACCG TNTAGT GTCAGTGC TATTGAAATNCCGAAATGTCTGAT ATAACATGTCTGTTAGTNT CCAAATGTTCAGTCATATAATCCCAAAGCTGG TACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAAC GTCATCTGTTTACCTGAGACAG TAATAATAGTGACAAGGATATTTATATGCACNACGAATGTTTACATACGAAAAGCTACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGAATCTTGATTTCTAGTAAAAAATATATACCTTATTAAAGTAAAAAAAAAAAAAAAAAAA]




>consensus_9422#2
TACATCATAAACTATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAA
TCAGTTTCTGCAGATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCG
GAATAATGGTTTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGT
TTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACT
ACGACCCAGTGAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAAT
GTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGG
ATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGA
GACAGATAATAATAGTGACAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGC
TACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCG
CTATGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTT
ATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAAT
TTGTATGAATCTTGATTTCTAGTAAAAAATATATACCTTATTAAAGTAAAAAAAAAAAAA
AAAAAA

consensusID : consensus_9422#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [CGAGGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGNNNNNNNNNNNNNNNNNNNNNNNCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCNNNNNNNNNNNNNNNNNNNNNAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTAATCAGCATTCCCATCAACTATTTCAACTTANACTGTAGCATTTAGACTNTTACAATANATTTGTATGAATCTTGNATTCTAGTANAAATATATACC]

[+] EMBL CD080990             [CGAGGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGNNNNNNNNNNNNNNNNNNNNNNNCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGGTATGAACACCGATTTAGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCNNNNNNNNNNNNNNNNNNNNNAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTAATCAGCATTCCCATCAACTATTTCAACTTANACTGTAGCATTTAGACTNTTACAATANATTTGTATGAATCTTGNATTCTAGTANAAATATATACC]




>consensus_9422#3
CGAGGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTCAAAAT
CAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGNNNNNN
NNNNNNNNNNNNNNNNNCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTATGAGGG
GGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGTGAAGG
TATGAACACCGATTTAGAAAATGTCTGATAATAACATGTCTGTTAGTTTGCCAAATGTTC
AGTCATATAATCCCAAAGCTGGATACATTCGCTTTGTATCTTCGTCTCGTTTATCAACAC
AAACAGTCATCTGTTTACCNNNNNNNNNNNNNNNNNNNNNAAGGATATTTATATGCACAC
GAATGTTTACATACGAAAAGCTACAGCCCCTGAAATACCTAAGTTACGTCTATGTGACAT
GGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTAATCAGCAT
TCCCATCAACTATTTCAACTTANACTGTAGCATTTAGACTNTTACAATANATTTGTATGA
ATCTTGNATTCTAGTANAAATATATACC

consensusID : consensus_9422#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 310
fasta sequence

                              [AGGTTATTGTTGTTGCAAGGGTATTTCTATGCACCAGGATGTTTACCTACGAAAAGGTACAGCCCGTGAAATACCTAAGGTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGAATCTTGATTTCTAGTAGCACCCTGTACCTTATTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL AI394907             [AGGTTATTGTTGTTGCAAGGGTATTTCTATGCACCAGGATGTTTACCTACGAAAAGGTACAGCCCGTGAAATACCTAAGGTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTATGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGAATCTTGATTTCTAGTAGCACCCTGTACCTTATTAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD134235             [                                                                                                                           ATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGAATCTTGA                                                          ]




>consensus_9422#4
AGGTTATTGTTGTTGCAAGGGTATTTCTATGCACCAGGATGTTTACCTACGAAAAGGTAC
AGCCCGTGAAATACCTAAGGTACGTCTATGTGACATGGGTTGCGGCTGTGCTAGGCGCTA
TGAATGTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATC
AGCATTCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTG
TATGAATCTTGATTTCTAGTAGCACCCTGTACCTTATTAAAGTAAAAAAAAAAAAAAAAA
AAAAAAAAAA

consensusID : consensus_9422#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence

                              [GGTAGTTATATGCACACGAATGTCTACTTATGAAAAGGTACAGCCCGTGAAATACCTAAGTTAGGTCTATCTGACATGGGTTGCGGCTGTGCTAGGCTGTGTGAATGTGATAAAACAGGCCGTTCCTTATGTAGTTTACCCTGCTGTAAAGCTAATTTATCAGCATTCCCATCAAGTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAGTAAACTTGTATGAATCTTGATTTCTCGTAAAAAATATATACCTTATTAAAGTAAAA]

[-] EMBL AI394961             [GGTAGTTATATGCACACGAATGTCTACTTATGAAAAGGTACAGCCCGTGAAATACCTAAGTTAGGTCTATCTGACATGGGTTGCGGCTGTGCTAGGCTGTGTGAATGTGATAAAACAGGCCGTTCCTTATGTAGTTTACCCTGCTGTAAAGCTAATTTATCAGCATTCCCATCAAGTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAGTAAACTTGTATGAATCTTGATTTCTCGTAAAAAATATATACCTTATTAAAGTAAAA]




>consensus_9422#5
GGTAGTTATATGCACACGAATGTCTACTTATGAAAAGGTACAGCCCGTGAAATACCTAAG
TTAGGTCTATCTGACATGGGTTGCGGCTGTGCTAGGCTGTGTGAATGTGATAAAACAGGC
CGTTCCTTATGTAGTTTACCCTGCTGTAAAGCTAATTTATCAGCATTCCCATCAAGTATT
TCAACTTAAACTGTAGCATTTAGACTTTTACAGTAAACTTGTATGAATCTTGATTTCTCG
TAAAAAATATATACCTTATTAAAGTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      ------------------------------------------------------------
consensus_9422#0      GAGCCAGATTCGGCACGAGGCCACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAG 60
consensus_9422#1      ------------------------------------------------------------
consensus_9422#3      ------------------------------------------------------------
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      ------------------------------------------------------------
consensus_9422#0      AATAGCTCATCGCAGAGAATCAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGT 120
consensus_9422#1      ------------------------------------------------------------
consensus_9422#3      ------------------------------------------------------------
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      ------------------------------------------------------------
consensus_9422#0      GGAACGTTTGCTCAAAGTAAGTTACCCTATCCACATAGTCCAAAGCGTCAATCACTGGAA 180
consensus_9422#1      -------ATGGTGATGATTCTGAAGATGATGAAGTGGAATATAGACCTCCAAAGTTGTTA 53
consensus_9422#3      ------------------------------------------------------------
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      ------------------------------------------------------------
consensus_9422#0      CTAATGGAATGGATGCAAATTTCACTTTTCACAGTAACC--TATGTTTCATTTCAAGTGC 238
consensus_9422#1      ACTGCACGACAGATAAGTTTACAATCACAGAGAATCGCTGTTCCAACTGATATTAAGGAC 113
consensus_9422#3      ------------------------------------------------------------
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      ------------------------------------------------------------
consensus_9422#0      ATGGGTAAGCCTCTATACTTGGAGGACCTGTGTGGTTTACTAATTAGTGGATTCAGTTCG 298
consensus_9422#1      ATGAAGCAGTCTACAGCTCATTCCAAACTAATTAGTCTAGAGTGCTTGAATCCAACTAAA 173
consensus_9422#3      ------------------------------------------------------------
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      -------------------------------------------------TACATCATAAA 11
consensus_9422#0      TGAATTTCCTTTTCAGGGACGTTTCGGTTATTCCGATCTATACTAAAAGTACATCATAAA 358
consensus_9422#1      CCAGCTCCAACCTTAACACCGGAACAAATTGCCGTCCGGCAAAAAAGAATAGCTCATCGC 233
consensus_9422#3      ------------------------------------------------------------
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      CTATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAATCAGTTT-CTG 70
consensus_9422#0      CTATGACAAGTTATCAAGATATATTACATATATATACATATCATAGTAATCAGTTT-CTG 417
consensus_9422#1      AGAGAATCAGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTC 293
consensus_9422#3      -----CGAGGCTAAGCACAAAGCGGAAGTTGAAAAGCTCCAAACTGTGGAACGTTTGCTC 55
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      CAGATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGT 130
consensus_9422#0      CAGATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGT 477
consensus_9422#1      AAAATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGT 353
consensus_9422#3      AAAATCAACGCAAATGTGATTGGGCGTCGTGGTCGAGGTAGAGGTCTTCGGAATAATGGN 115
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      TTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTAT 190
consensus_9422#0      TTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTAT 537
consensus_9422#1      TTGGTAAACCGTGATCAGATCTCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTAT 413
consensus_9422#3      NNNNNNNNNNNNNNNNNNNNNNCAGCTCAAACGCGTTCACAATTTGATGTTTTAAATTAT 175
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      GAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGT 250
consensus_9422#0      GAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGT 597
consensus_9422#1      GAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGT 473
consensus_9422#3      GAGGGGGATATCATTGAAAAGGAGTATTTCAATGGCACGCACGCTTCACTACGACCCAGT 235
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      GAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAAT 310
consensus_9422#0      GAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAAT 657
consensus_9422#1      GAAGGTATGAACACCGATTTAGTGGTCAGTGCTTATGAAAATACGAAAATGTCTGATAAT 533
consensus_9422#3      GAAGGTATGAACACCGATTTAG-----------------------AAAATGTCTGATAAT 272
                                                                                  

consensus_9422#4      ------------------------------------------------------------
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      AACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGC 370
consensus_9422#0      AACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCCAAGCTGGATACATTCGC 717
consensus_9422#1      AACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGC 593
consensus_9422#3      AACATGTCTGTTAGTTTGCCAAATGTTCAGTCATATAATCCCAAAGCTGGATACATTCGC 332
                                                                                  

consensus_9422#4      -----------------------------------------------------AGGTTAT 7
consensus_9422#5      ------------------------------------------------------------
consensus_9422#2      TTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGATAAT 430
consensus_9422#0      TTTGTATCTTCGTCTCGTTTATCAAACACAACAGTCATCTGTTTACCTGAGACAGNNATA 777
consensus_9422#1      TTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCTGAGACAGANNTA 653
consensus_9422#3      TTTGTATCTTCGTCTCGTTTATCAACACAAACAGTCATCTGTTTACCNNNNNNNNNNNNN 392
                                                                                  

consensus_9422#4      TGTTGTTGCAAGGGTATTTCTATGCACCAGGATGTTTACCTACGAAAAGGTACAGCCCGT 67
consensus_9422#5      ------------GGTAGTTATATGCACACGAATGTCTACTTATGAAAAGGTACAGCCCGT 48
consensus_9422#2      AATAGTGACAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGCCCCT 490
consensus_9422#0      TATAGTGACANGGATATTTATATGCACACGAATGTTNACATACGANNAGCTACAGNCCCT 837
consensus_9422#1      TATAGTGACAAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGNCCCT 713
consensus_9422#3      NNNNNNNN-AAGGATATTTATATGCACACGAATGTTTACATACGAAAAGCTACAGCCCCT 451
                                  * ** ** *******  * ****  ** ** **  ** ***** ** *

consensus_9422#4      GAAATACCTAAGGTACGTCTATGTGA-CATGGGTTGCGG-CTGTGCTAGGCGCTATGAAT 125
consensus_9422#5      GAAATACCTAAGTTAGGTCTATCTGA-CATGGGTTGCGG-CTGTGCTAGGCTGTGTGAAT 106
consensus_9422#2      GAAATACCTAAGTTACGTCTATGTGA-CATGGGTTGCGG-CTGTGCTAGGCGCTATGAAT 548
consensus_9422#0      GAAATACCCTAGNTACGTCTATGTGAACATGGGTTGCNNGCTGTGCTANGCGCTATGAAT 897
consensus_9422#1      GAAATACCNTAGNTACGTCTATGTGA-CATGGGTTGCGG-CTGTGCTANGCGCTATGAAT 771
consensus_9422#3      GAAATACCTAAGTTACGTCTATGTGA-CATGGGTTGCGG-CTGTGCTAGGCGCTATGAAT 509
                      ********  ** ** ****** *** **********   ******** **  * *****

consensus_9422#4      GTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCAT 185
consensus_9422#5      GTGATAAAACAGGCCGTTCCTTATGTAGTTTACCCTGCTGTAAAGCTAATTTATCAGCAT 166
consensus_9422#2      GTGCTAAAACAGGCCGTTCCTTATGTAGTTTATCCTGTTATAAAGCTAATTTATCAGCAT 608
consensus_9422#0      GTGCTAAA-CAGGCCCGTCCTTATGTAGNTNATCCTGGTATAAAGCTA--TTATC-GCAT 953
consensus_9422#1      GTGCNTAAACAGGCCG-TNCTTATGTAGNTNATCCTGGTATAAAGCTAA-TTATCAGCAT 829
consensus_9422#3      GTGCTAAAACAGGCCG-TTCCTTAATCAGCATTCCCA--------TCAA-CTATTTCAAC 559
                      ***   ** ******  * * *   *       **            *   ***    * 

consensus_9422#4      TCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGA 245
consensus_9422#5      TCCCATCAAGTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAGTAAACTTGTATGA 226
consensus_9422#2      TCCCATCAACTATTTCAACTTAAACTGTAGCATTTAGACTTTTACAATAAATTTGTATGA 668
consensus_9422#0      TCC-ATCA---CTTTTCACTTAA-CTGNA-CATT-AGACTTT----ACATAATTG-ATGA 1001
consensus_9422#1      TCC-ATCA--CTATTTCACTTAA--CTGAGCATT-AGACTTT----ACATAATNTGATGA 879
consensus_9422#3      TTA-N--A--CTGTAGCATTTA-----GACTNTT-ACA--------ATANATTTGTATGA 600
                      *      *     *   * ***      *   ** * *          * * *   ****

consensus_9422#4      ATCTTGATTTCTAGTAGCACCC-TGTACCTTATTAAAGTAAAAAAAAAAAAAAAAAAAAA 304
consensus_9422#5      ATCTTGATTTCTCGTAAAAAATATATACCTTATTAAAGTAAAA----------------- 269
consensus_9422#2      ATCTTGATTTCTAGTAAAAAATATATACCTTATTAAAGTAAAAAAAAAAAAAAAAAAA-- 726
consensus_9422#0      -TCTTGATTCTGNAAAATTTAC-------------------------------------- 1022
consensus_9422#1      ATCT--GATTCTAGTAAAATTT-TA----------------------------------- 901
consensus_9422#3      ATCTTGNATTCTAGTANAAATA-TATACC------------------------------- 628
                       ***    *      *                                            

consensus_9422#4      AAAAAA 310
consensus_9422#5      ------
consensus_9422#2      ------
consensus_9422#0      ------
consensus_9422#1      ------
consensus_9422#3      ------