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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1207 fasta sequence
[GAAAAAT-GTATTTT-ACAAAAT-ATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAATCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCACCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGTCCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAAAAGCAGG]
[+] EMBL CD077074 [GAAAAAT GTATTTT ACAAAAT ATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACA ]
[+] EMBL AA999550 [GAAAAATAGTATTTTAACAAAATAATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATTCTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATAATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTTCTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCCCAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGANTAGGCAAACAATTCTTCATCACCTG ]
[+] EMBL CD139789 [ GAACGCATTTCATGTAGTCTAGATAATGTTCTAGAATAAGCAAACAAATCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTTAAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATG ]
[-] EMBL AW017099 [ ATCTATTAATTGCCGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTAGATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGTGTATCATATAGAACATCAATTAAATGTGTANAACGTTTTAAACTTGGTAAATTATGCATCCCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAATCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCACCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGTCCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAG ]
[-] EMBL CD117835 [ CCNACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGA ]
[+] EMBL CD091046 [ TTGTAAACCATTTGTCAAGTTGATTATCGACATCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTTTCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGGCCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAAAAGCAGG]
consensusID : consensus_9424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 355 fasta sequence
[TTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAGTGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC]
[+] EMBL CD184643 [TTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTGTTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAGTGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC]
[-] EMBL CD139728 [ ATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATT ]
consensusID : consensus_9424#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence
[TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCCCTCGTGCCGAATTTTAAGCCGCCAC]
[-] EMBL CD077773 [TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCTTTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCATCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAATAATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAACAATTTGTATTCATCCCTCGTGCCGAATTTTAAGCCGCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9424#0 GAAAAATGTATTTTACAAAATATAAGCGTATCGCAAAACTAATCATCTGTGTATAATATT 60
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 CTATCTACAGAAAAGATTAAGAAGTAGAATTGTTCTTTCTATTTTTCAAAGTCATAGATA 120
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 ATAAGATATAAAGGGAAAAAATTAATCAGCAAAATACGAATCTGTTGGACATCTGTTTTT 180
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 CTATGAAATGTTTATGTTCTCTTTTCTTAGCCAACCTTACGGTTTGGTCCACTTTGATCC 240
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 CAATACGCTTTTGAACGCATTTCATGTAATCTAGATAATGTTCTAGAATAAGCAAACAAA 300
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 TCTTCATCACCTGTAAATATTGGTGCTTTCACATTAGTTGGATGATCCATATTAATCTTT 360
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 AAATCATCTATTAATTGACGATGATTAAATTGTAATTCAATAGATGATGTATCATTTTTA 420
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 GATGATAATAATAATAAATTTTCAATTGAACAATTAGCACCAATAATAAGACGTGTATGT 480
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 GTATCATATAGAACATCAATTAAATGTGTAAAACGTTTTAAACTTGGTAAATTATGCATC 540
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 CCCATTTGTGGTACATCATATAATATAATTGTATGAAAACGTTTAGCTAAACTCATATAA 600
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 TCAGCAGCACCTAAAGGCACATTGCACAAGTCAGCAAATGAACATTTTAAAATATTTCCA 660
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 CCAGTTTGTTTAAAGGTAACTACACGTCCATATGTTGAAATTTCCCCAACTACCGGTGGT 720
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 CCAACATGTCCATCTTCAGTTGCTAATTTTGTAAACCATTTGTCAAGTTGATTATCGACA 780
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 TCATTATTTCCAGTAGAATAATCTAAATATAGGGGAAGATCTGATTCTTGCAATGACGTT 840
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 ------------------------------------------------------------
consensus_9424#0 TCACTTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCT 900
consensus_9424#2 ----TTATTTTGGTACGATAATCCACACCAGAATCCAAGTTGACTATATGACACTTTTCT 56
consensus_9424#1 -----------------------------------------------------------T 1
*
consensus_9424#0 TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 960
consensus_9424#2 TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 116
consensus_9424#1 TTAAGAAGACCTATAAAAGGTACAAAGTTTACACGTTGTAATCCATTCTTGTATAAATCA 61
************************************************************
consensus_9424#0 TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 1020
consensus_9424#2 TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 176
consensus_9424#1 TCAGGACAACGATTCGATGTAGCAACAACGACAGCGCCAAGATTAAAGAAATTCTCAAAT 121
************************************************************
consensus_9424#0 AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 1080
consensus_9424#2 AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 236
consensus_9424#1 AATCGTTTTAATATCATTGCATCTGCAATATCTGTGACCTGAAATTCATCGAAGCATAAC 181
************************************************************
consensus_9424#0 AATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTG 1140
consensus_9424#2 AATTTGTATTCATCCCTCGTGCCGAATTTTAA-GCCGCCAC------------------- 276
consensus_9424#1 AATTTGTATTCATCAATGATACTTTTCGCTACTGGAGGAATAGGATCAAATGATTTTTTG 241
************** * * * ** * * *
consensus_9424#0 TTTCTTGGAGCAGATGAACGAACAGCATGTAGCCAGTTCCAAAAACCCTGAAAATGAGAA 1200
consensus_9424#2 ------------------------------------------------------------
consensus_9424#1 TTTCTTGGAGCAGATGAACGAACAGCATGTAGCCTTCCATGAACTTTATACATGAATGAG 301
consensus_9424#0 AAGCAGG----------------------------------------------- 1207
consensus_9424#2 ------------------------------------------------------
consensus_9424#1 TGGAAATGAGTCCTCCACTTGCAATCGAGGCTACAGCACTCATAAAACATATTC 355
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||