These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 922 fasta sequence [GGACAGCATCGCCGATGAACAAGAAGGGTCTGATGCAGACGTGAAGATGAGGTTTGGCAAAGCAAGGGCAGCATTCCTACAATCGAGGATTACCTGGAATTAAAAACAACCGTCACCCGAGACCGAAGCCATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATACTTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTCATAAACAGCTATCTACGCAGCATACTCAATGTTTGTTGACCGCATACTATCAGCAGCAGTGTACTGGGAGAGAGAACAAAGCAGCTTCCAACTGAATAGGGAATCAGGAGAAGACGCTGCAGGTGGATATGTCACATTGCAGAATTCATCAAACTGAATCTCGAGGCAAGCTCTAACTTGGAATTTTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAGACATTAAAAGAATGAATGGCAGCTGGAAGGGATTGTCCAGGACGTAGTTCGATTGAGAATGCTAGTTGGCGGCTTATGCTGCCGCACGAGGTTTAACGGGCGTAAGGAAGTTATAATTTTGTATGTGTGATTATTCAAAAAGTCAAAAGAGCTTCTATTTTTTCATAACCAGCCTTTGTATAACTTTTTCAATCTGTGTTAACTTATTGCTACATTCAAATACCTACTATGATTCATATTGATCAATGATTTCATTGCTCTTTGTCTCTAAATTGTCTGCATTTATATACCCCGTTTGTGTGTCTTGTAGCTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGTAAGTTGGAAATTAAATCTGTCATCCATTATCTATATGATGGAAGTTCAGTTCAGTTACTTTGTTGAAATTTATCGAGG] [+] EMBL CD146026 [GGACAGCATCGCCGATGAACAAGAAGGGTCTGATGCAGACGTGAAGATGAGGTTTGGCAAAGCAAGGGCAGCATTCCTACAATCGAGGATTACCTGGAATTAAAAACAACCGTCACCCGAGACCGAAGCCATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATACTTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTCATAAACAGCTATCTACGCAGCATACTCAATG ] [+] EMBL CD133097 [ CATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATACTTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTCATAAACAGCTATCTACGCAGCATACTCAATGTTTGTTGACCGCATACTATCAGCAGCAGTGTACTGGGAGAGAGAACAAAGCAGCTTCCAACTGAATAGGGAATCAGGAGAAGACGCTGCAGGTGGATATGTCACATTGCAGAATTCATCAAACTGAATCTCGAGGCAAGCTCTAACTTGGAATTTTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAGACATTAAAAGAATGAATGGCAGCTGG ] [+] EMBL CD167866 [ CTGCAAGTGGATATGTCACATTGCAGAATTCATCAAATTGAATCTCGAGGCAAGCTCTAACTTGGAATTTTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAGACATTAAAAGAATGAATGGCAGCTGGAAGGGATTGTCCAGGACGTAGTTCGATTGAGAATGCTAGTTGGCGGCTTATGCTGCCGCACGAGGTTTAACGGGCGTAAGGAAGTTATAATTTTGTATGTGTGATTATTCAAAAAGTCAAAAGAGCTTCTATTTTTTCATAACCAGCCTTTGTATAACTTTTTCAATCTGTGTTAACTTATTGCTACATTCAAATACCTACTATGATTCATATTGATCAATGATTTCATTGCTCTTTGTCTCTAAATTGTCTGCATTTATATACCCCGTTTGTGTGTCTTGTAGCTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGTAAGTTGGAAATTAAATCTGTCATCCATTATCTATATGATGGAAGTTCAGTTCAGTTACTTTGTTGAAATTTATCGAGG] consensusID : consensus_9426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 751 fasta sequence [CAGTCGTTTGGATTCCTGTGTGTGGGGTAATTCGATGACGGACTGTTGCCAGTGGAAATCTCGTACAATAGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAACAAGTGAGGCTATGAAATAAATGTACACTGCCAATGTGACGACCTGTGTGTAAACCAATGGGATGCAAACAAGCGCTCCAGCTATTGTACGAGATTTCCACTGGCAACAGTCCGTCATCGAATTACCCCACACACAGGAATCCAAACGACTGGCTTCTCGCCCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCATTTGACTCGAAATAGTACGATAAATATTCCTACTAGGTTGATCCCAACTGAGAGCGTTGTTCCCAGCGAAACTGATAATACGTCGAGAATGAATGTTTCGGATGATCATACGGCTATGGATACTGGGTTATTAACTGTTACTCCTAATACTCCCGCAGTAAACCGTCTTCTTCATGAA] [+] EMBL CD125710 [CAGTCGTTTGGATTCCTGTGTGTGGGGTAATTCGATGACGGACTGTTGCCAGTGGAAATCTCGTACAATAGCTGGAGCGCTTGTTTTCATTCCATCAGCAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAAACAGTGAGGCTATGAAATAA ] [-] EMBL CD112131 [ ACAATAGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAACAAGTGAGGCTATGAAATAAATGTACACTGCCAATGTGACGACCTGTGTGTAAACCAATGGGATGC ] [+] EMBL CD135467 [ TAGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCATCCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCCATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCACGAACTATCGATTATAAACTGACGACCAACAAGTGAGGC ] [-] EMBL CD146693 [ ATATTTTCGTCATTTTCCCCAATAGGATTAACCAGTGTTTCGGCAA CTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAACTGACGACCAACAAGTGAGGCTATGAAATAAATGTACACTGCCAATGTGACGACCTGTGTGTAAACCAATGGGATGCAAACAAGCGCTCCAGCTATTGTACGAGATTTCCACTGGCAACAGTCCGTCATCGAATTACCCCACACACAGGAATCCAAACGACTGGCTTCTCGCCCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCATTTGACTCGAAATAGTACGATAAATATTCCTACTAGGTTGATCCCAACTGAGAGCGTTGTTCCCAGCGAAACTGATAATACGTCGAGAATGAATGTTTCGGATGATCATACGGCTATGGATACTGGGTTATTAACTGTTACTCCTAATACTCCCGCAGTAAACCGTCTTCTTCATGAA] [+] EMBL CD062595 [ GGCTTCTCGCCCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCATTTGACTCGAAATAGTACGATAAATATTCCTACTAGGTTGATCCCgatggggt ] consensusID : consensus_9426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [TCTTTATTTCTGTGGAGAAAATTTAACAGAAAACTAACTTAAATCTACACAACAACGCAACAGTACTTAATACAAGCAGTTAAGATTATTCTAATTGAAAAAATTATATTGCAGATCAAATATGGCCGGATATAGGAAACACCAAAGAGATTGATGCCATGGAAAATGAATATCAACTTGTTAAGGTAAAGTTAGTTTAATTAAATAACGAAAGAATTACACACCAAAAATTAGCTTATTCATTAGATAAATAGAATTGACATTTCCAACATAATTGTTTACATACAGTAGCAAGCAATGTGGTGAATCACGTGGAACAAAATTGTTAAGAAAATAAATTAGCTGATTAATCTACCACTATTGATATTGAAGGGGTACTACAAACTTTTTATATTGCTCTATTTAAATATGAACGCGTTAAACAAACTCACTGAAGAAAAACAAATAAATGATTCACTATTTGCTGATGCTTAGAAGCACAGGCAGATTTTCTAACAAGATGAGTTTACAATATTTCCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGATATAGAGATCTTGTGAATTTGNTCGCGAACTATCGATTANTAACT] [+] EMBL CD129950 [TCTTTATTTCTGTGGAGAAAATTTAACAGAAAACTAACTTAAATCTACACAACAACGCAACAGTACTTAATACAAGCAGTTAAGATTATTCTAATTGAAAAAATTATATTGCAGATCAAATATGGCCGGATATAGGAAACACCAAAGAGATTGATGCCATGGAAAATGAATATCAACTTGTTAAGGTAAAGTTAGTTTAATTAAATAACGAAAGAATTACACACCAAAAATTAGCTTATTCATTAGATAAATAGAATTGACATTTCCAACATAATTGTTTACATACAGTAGCAAGCAATGTGGTGAATCACGTGGAACAAAATTGTTAAGAAAATAAATTAGCTGATTAATCTACCACTATTGATATTGAAGGGGTACTACAAACTTTTTATATTGCTCTATTTAAATATGAACGCGTTAAACAAACTCACTGAAGAAAAACAAATAAATGATTCACTATTTGCTGATGCTTAGAAGCACAGGCAGATTTTCTAACAAGATGAGTTTACAATATTTCCTTTAACAATCCCATATACACTATGAACTCTAGGAACATGAAGAAAGGATATAGAGATCTTGTGAATTTGNTCGCGAACTATCGATTANTAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9426#1 ------------------------------------------------------------ consensus_9426#2 ------------------------------------------------------------ consensus_9426#0 GGACAGCATCGCCGATGAACAAGAAGGGTCTGATGCAGACGTGAAGATGAGGTTTGGCAA 60 consensus_9426#1 ------------------------------------------------------------ consensus_9426#2 ------------------------------------------------------------ consensus_9426#0 AGCAAGGGCAGCATTCCTACAATCGAGGATTACCTGGAATTAAAAACAACCGTCACCCGA 120 consensus_9426#1 --------CAGTCGTTTGGATTCCTGTGTGTGGGGTAATTCGATGACGGACTGTTGCCAG 52 consensus_9426#2 --------------------------------------------TCTTTATTTCTGT-GG 15 consensus_9426#0 GACCGAAGCCATAATCTTCACTATGAACGTCGAGAAATTTCTATTGTGCGTAGTTGATAC 180 ** consensus_9426#1 T-GGAAATCTCGTACAAT--AGCTGGAGCGCTTGTTTTCATTCCATCAACAATACACCAT 109 consensus_9426#2 A-GAAAATTTAACAGAA---AACTAACTTAAATCTACACAACAACGCAACAGTACTTAAT 71 consensus_9426#0 TTAGAGAACTACTACAACCAAAATGAAAGGTGTACAGGTATTC-ATAAACAGCTATCTAC 239 * * * * ** * * * * **** * consensus_9426#1 CCAGTTTTCCAATTAAAATCTATCACCTCATTAATATCAATATCTTCGTCATTTTCCCCC 169 consensus_9426#2 ACAAG----CAGTTAAGAT-TAT--TCTAATTGAAAAAATTATATTG----------CAG 114 consensus_9426#0 GCAGC---ATACTCAATGTTTGTTGACCGCATACTATCAGCAGCAGTGT---ACTGGGAG 293 ** * * ** * * * * * * * * consensus_9426#1 ATAGGATTAACCAGTGTTTCGGCAACCTTTAACAATCCCATATACACTATGAACTCTAGG 229 consensus_9426#2 ATCAAATATGGCCGGATATAGGAAACACCAAAGAG----ATTGATGCCATGGAA--AATG 168 consensus_9426#0 AGAGAACAAAGCAGCTTCCAACTGAATAGGGAATCAGGAGAAGACGCTGCAGGT---GGA 350 * * * * * * * * * consensus_9426#1 AACATGAAGAAAGGAAAATAGAGATCTTGTGAATTTGTTCGCGAACTATCGATTATAAAC 289 consensus_9426#2 AATATCAACTTGTTAAGGTAAAGTTAGT-TTAATTAAATAACGAAAGA---ATTACACAC 224 consensus_9426#0 TATGTCACATTGCAGAATTCATCAAACT--GAATCTCGAGGCAAGCTCTAACTTGGAATT 408 * * * * * * *** * * ** * consensus_9426#1 TGACGACCAACAAGTGAGGCTATGAAATA-AATGTACACTGCCAATGTGACGACCTGTGT 348 consensus_9426#2 CAAAAATTAGCTTATTCATTAGATAAATAGAATTGACATTTCCAACATAATTGTTTACAT 284 consensus_9426#0 TTGAAGGGAAAAGAAAAAGAGGAAGACCAAGGAACACATTGCGTCGGAAATAGTAAGCAG 468 * * * *** * * * consensus_9426#1 GTAAACCAATGGGATGCAAACAAGCGCTCCAGCTATTGTACGAGATTT---CCACTGGCA 405 consensus_9426#2 A-----CAGTAGCAAGCAATGTGGTGAATCA--CGTGGAACAAAATTG---TTAA----G 330 consensus_9426#0 ACA--TTAAAAGAATGAATGGCAGC-TGGAAGGGATTGTCCAGGACGTAGTTCGATTGAG 525 * * * * * * * * * * * consensus_9426#1 ACAGTCCGTCATCGAATTACCCCACACACAGGAATCCAAACGACTGGC-----TTCTCGC 460 consensus_9426#2 AAAATAAATTAGCTGATTAATCTACCACTATTGATATTGAAGGGGTAC-----TACAAAC 385 consensus_9426#0 AATGCTAGTTGGCGGCTTATGCTGCCGCACGAGGTTTAACGGGCGTAAGGAAGTTATAAT 585 * * * *** * * * * * consensus_9426#1 CCATTTAGAGGATCGACATATAACATAAACTTTCCTTTCACTCCTGATATGATTGGATCT 520 consensus_9426#2 TTTTTATATTGCTCTATTTA-AATATGAACGCGTTAAACAAACTCACTGAAGAAAAACAA 444 consensus_9426#0 TTTGTATGTGTGATTATTCAAAAAGTCAAAAGAGCTTCTATTTTT-TCATAACCAGCCTT 644 * * * ** * ** * consensus_9426#1 GCGCTATCTTTATCACTAATTGGTCATTCACAAGATTTAACAACTGCGCGTCAT---TTG 577 consensus_9426#2 A---TAAATGATTCACTATTTGCTGATGCTTAGAA----GCACAGGCAGATTTT---CTA 494 consensus_9426#0 TGTATAACTTTTTCAATCTGTGTTAACTTATTGCTACATTCAAATACCTACTATGATTCA 704 ** * *** * ** * * ** * * consensus_9426#1 ACTCGA--AATAGTACGATAAATATTC-CTACTAGGTTGATCCCAACTGAGAGCGTTGTT 634 consensus_9426#2 A--CAA--GATGAGTTTACAA-TATTT-CCTTTAA--CAATCCCA--TATACACTATGAA 544 consensus_9426#0 TATTGATCAATGATTTCATTGCTCTTTGTCTCTAAATTGTCTGCATTTATATACCCCGTT 764 * ** * * ** ** ** * * * consensus_9426#1 CCCAGCGAAACTGATAATACGTCGAGAATGAATGT--TTCGGATGATCATACGGCTATGG 692 consensus_9426#2 CTCTAGGAACATGAAGAAA----GGATATAGAGAT--CTTG--TGA--ATTTGNTCGCGA 594 consensus_9426#0 TGTGTGTCTTGTAGCTTTCCTTTCACTCCTGATATGATTGGATCTGCGCTATCTTTATCA 824 * * * * * * consensus_9426#1 ATACTGGGTTATTAACTGTTACTCCTAATACTCCCGCAGTAAACCGTCTTCTTCATGAA- 751 consensus_9426#2 ACTATCGATTANTAACT------------------------------------------- 611 consensus_9426#0 CTAATTGGTCATTCACAAGTAAGTTGGAAATTAAATCTGTCATCCATTATCTATATGATG 884 * * * * * ** consensus_9426#1 -------------------------------------- consensus_9426#2 -------------------------------------- consensus_9426#0 GAAGTTCAGTTCAGTTACTTTGTTGAAATTTATCGAGG 922 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||