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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1473 fasta sequence
[CAGGGGTATTTTCGGAACTCTGTGACTGAAGCATGTCTTTATACCCTTCTCTCGAAGAGTTAAAAGTACAGACTATACTTGACAGTCAAAGCAATGGACCAACCACTATGCAGTCCAATTGTCAAGGACCATTACCACAAATGAACTCTACTCTAATGGGAAATCGCAATGAGGATAATAATTTGTCTTCTTACAACAGTTGTGGTGGATCTGTTACCTATGGATCTACAGTATCTGGTATTTTTTCTCAAGCTGGTATGGAGCGTGGGATCAATTCAATGTCGATTGCCCCTTTTTCACCAAGCGGGGCACTTTGTCTACCACTTCCAGCACCATTCGATTGCATAGATATAAAACCAGGAGTTAGACTTGTTACTCTTTGTAAAAATGAATTCGGTAAAGTTGGAATTCAGCTTAAGGAAATACAGAAAGGTATATTTGTTTCATTTGTGGAGGGGTTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGATATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCTAACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAAAGACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAAGACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCA-TTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACGAGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAATAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACATTGAATNTATTANAAGTCATTGAGTACCATTNTACTCAAGNNCTATTATTANTACTACTACCTTTTCGATAGNANTCACTGACNACNNANGGGNGAGTATTTCTCATTTCACTGNTTGNGTTACNTTACNNCTTGACTTTNCCATTTTCTTCCGGNTTTTATNTTNCGGNTTCCTNCTCATCAAGTTTGNAANANNCNGACCNATTGGCGTTANNNCANGNCNCACGCACNNCTCGNGGCANGGGGCC]
[+] EMBL CD079414 [CAGGGGTATTTTCGGAACTCTGTGACTGAAGCATGTCTTTATACCCTTCTCTCGAAGAGTTAAAAGTACAGACTATACTTGACAGTCAAAGCAATGGACCAACCACTATGCAGTCCAATTGTCAAGGACCATTACCACAAATGAACTCTACTCTAATGGGAAATCGCAATGAGGATAATAATTTGTCTTCTTACAACAGTTGTGGTGGATCTGTTACCTATGGATCTACAGTATCTGGTATTTTTTCTCAAGCTGGTATGGAGCGTGGGATCAATTCAATGTCGATTGCCCCTTTTTCACCAAGCGGGGCACTTTGTCTACCACTTCCAGCACCATTCGATTGCATAGATATAAAACCAGGAGTTAGACTTGTTACTCTTTGTAAAAATGAATTCGGTAAAGTTGGAATTCAGCTTAAGGAAATACAGAAAGGTATATTTGTTTCATTTGTGGAGGGGTTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGATATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCTAACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAA ]
[+] EMBL CD067023 [ GTTACTCTTTGTAAAAATGAATTCGGTAAAGTTGGAATTCAGCTTAAGGAAATACAGAAAGGTATATTTGTTTCATTTGTGGAGGGGTTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGATATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCTAACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAAAGACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAAGACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTNTATGATAAATTAACT ]
[-] EMBL CD073689 [ TTCGAACGTGTTATTACCGTGCATAAAGACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAAGACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCA TTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATTGAATGATCCTTTAAACTTGTTTCTTTTGTTT ]
[-] EMBL CD197810 [ CACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGACAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATGAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCACTTACCTTTTGTTTAAATTTATAAATAACACTTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCGTACTGAATTTATTCATAATA ]
[+] EMBL SM065 [ tcggcacgaGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCANAATAAACAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACGAGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAATAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACATTGAATNTATTANAAGTCATTGAGTACCATTNTACTCAAGNNCTATTATTANTACTACTACCTTTTCGATAGNANTCACTGACNACNNANGGGNGAGTATTTCTCATTTCACTGNTTGNGTTACNTTACNNCTTGACTTTNCCATTTTCTTCCGGNTTTTATNTTNCGGNTTCCTNCTCATCAAGTTTGNAANANNCNGACCNATTGGCGTTANNNCANGNCNCACGCACNNCTCGNGGCANGGGGCC]
[+] EMBL SM7211 [ gaGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCANAATAAACAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACGAGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAATAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACAT ]
consensusID : consensus_9429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence
[AGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTGTGAAGAGGTAATGGACTAAATGTAGTTGGATTAAAAGATAAAGATTTATTACAATTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATGGAATGGTCCGTCGAA]
[-] EMBL CD064084 [AGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTGTGAAGAGGTAATGGACTAAATGTAGTTGGATTAAAAGATAAAGATTTATTACAATTTATGGACGAATCAAAAACTCCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATGGAATGGTCCGTCGAA]
consensusID : consensus_9429#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 362 fasta sequence
[TATCATAATAAACACTTGANTGATCCTTTNTACTNGTTTCTTTGGTTTTACTCTTCCAAAAAAAAAATAACGAGCTATNTANTTTNGCTATACGAATCATTTNGCATGATTGTTAACAATGATGTNTGGTAATAATTGGAAAGTATTATGATGACATTAATAATTGNATTATAGTTAACATTGAATATATTAAAAGTCATTGAGTACCATTATACTCAAGTACTATTATTATTATTATACCTTTGCGATAGTATTCATGACAAAAAAAGAGAGTATTTCTCATTTCACTGTTTGCTTATTTATTCTTGATTTTCCATTTNNTNCGGNTTNCATTTNATTTNCTACTCATCAATTTAAATAAA]
[+] EMBL SM923 [TATCATAATAAACACTTGANTGATCCTTTNTACTNGTTTCTTTGGTTTTACTCTTCCAAAAAAAAAATAACGAGCTATNTANTTTNGCTATACGAATCATTTNGCATGATTGTTAACAATGATGTNTGGTAATAATTGGAAAGTATTATGATGACATTAATAATTGNATTATAGTTAACATTGAATATATTAAAAGTCATTGAGTACCATTATACTCAAGTACTATTATTATTATTATACCTTTGCGATAGTATTCATGACAAAAAAAGAGAGTATTTCTCATTTCACTGTTTGCTTATTTATTCTTGATTTTCCATTTNNTNCGGNTTNCATTTNATTTNCTACTCATCAATTTAAATAAA]
consensusID : consensus_9429#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence
[TGGTATTTTTTCTCAAGCTGGTATGGAGNGTGGGATCAATTCAATGTCGATTGNCCCTTTTTCACCAAGAGGNGTACTTTGTCTACCACTTCCAGTACCATNCGATTGCATNGATATAANACCAGGAGNAAGACTCGTTACTCTTNGTAANATTGAATTCGGTAATGTTTGGAATTCAGTTTAAGGAAATACAGAAAGGTATATTTGCCCCATTNGNGGAGGGGNCTTCACCAGCTGCACNTGG]
[+] EMBL SMRAP161 [TGGTATTTTTTCTCAAGCTGGTATGGAGNGTGGGATCAATTCAATGTCGATTGNCCCTTTTTCACCAAGAGGNGTACTTTGTCTACCACTTCCAGTACCATNCGATTGCATNGATATAANACCAGGAGNAAGACTCGTTACTCTTNGTAANATTGAATTCGGTAATGTTTGGAATTCAGTTTAAGGAAATACAGAAAGGTATATTTGCCCCATTNGNGGAGGGGNCTTCACCAGCTGCACNTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9429#0 CAGGGGTATTTTCGGAACTCTGTGACTGAAGCATGTCTTTATACCCTTCTCTCGAAGAGT 60
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 TAAAAGTACAGACTATACTTGACAGTCAAAGCAATGGACCAACCACTATGCAGTCCAATT 120
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 GTCAAGGACCATTACCACAAATGAACTCTACTCTAATGGGAAATCGCAATGAGGATAATA 180
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 ATTTGTCTTCTTACAACAGTTGTGGTGGATCTGTTACCTATGGATCTACAGTATCTGGTA 240
consensus_9429#3 -------------------------------------------------------TGGTA 5
consensus_9429#2 -------------TATCATAATAAACACTTGANTGATCCTTTNTACTNGTTTCTTTGGTT 47
consensus_9429#1 ---------AGAAGTCTTCCAAGTGGACAATTACGATTACAAATGGATCGATCATTACCT 51
*
consensus_9429#0 TT--TTT---TCTCAAGCTGGTATGGAGCGTGGGATCAATTCAATGT-CGATTGCCCCTT 294
consensus_9429#3 TT--TTT---TCTCAAGCTGGTATGGAGNGTGGGATCAATTCAATGT-CGATTGNCCCTT 59
consensus_9429#2 TTACTCT---TCCAAAAAAAAAATAACGAGCTATNTANTTTNGCTATACGAATCATTTNG 104
consensus_9429#1 TTTGTTTAAATTTATAAATAACAATTACAGATATTTTTATTCAATAT-TAATTATAATTA 110
** * * * * * * * ** * * * *
consensus_9429#0 TTTCACCAAGCGGGGCACTTTG-TC-TACCACTTCCAGCACCATTCGATTGCATAGAT-- 350
consensus_9429#3 TTTCACCAAGAGGNGTACTTTG-TC-TACCACTTCCAGTACCATNCGATTGCATNGAT-- 115
consensus_9429#2 CATGATTGTTAACAATGATGTN-TGGTAATAATTGGAAAGTATTATGATGACATTAAT-- 161
consensus_9429#1 ACTTAACAGTATGATCATGATGATGATGATGATGGTGTGAAGAGGTAATGGACTAAATGT 170
* * * * * * ** * **
consensus_9429#0 A-TAAAACCAGGAGT--TAGACTTGTTACTCTTTGTAAA---AATGAATTCGGTAAAGTT 404
consensus_9429#3 A-TAANACCAGGAGN--AAGACTCGTTACTCTTNGTAAN---ATTGAATTCGGTAATGTT 169
consensus_9429#2 AATTGNATTATAGTT--AACATTGAATATATTAAAAGTC---ATTGAGTACCATTATACT 216
consensus_9429#1 AGTTGGATTAAAAGATAAAGATTTATTACAATTTATGGACGAATCAAAAACTCCAATGAA 230
* * * * * * * ** * * * * *
consensus_9429#0 -GGAATTCAGC-TTAAGGAAATACAGAAA-GGTA-TATTTGTTTCA--TTTGTGGAGGGG 458
consensus_9429#3 TGGAATTCAGT-TTAAGGAAATACAGAAA-GGTA-TATTTGCCCCA--TTNGNGGAGGGG 224
consensus_9429#2 CAAGTACTATTATTATTATTATACCTTTGCGATAGTATTCATGACA--AAAAAAGAGAGT 274
consensus_9429#1 -AGTTACTATTATACCAAAGACATTTTAT-GATA-AATTAACTAGAAGTCTTCCAAGTGG 287
* * * * * ** *** * ** *
consensus_9429#0 TTTTCACCAGCTGCACTTGGCGGTGTGCGTTTTGGAGATCAAGTCCTGGAGATTAATGAT 518
consensus_9429#3 NCTTCACCAGCTGCACNTGG---------------------------------------- 244
consensus_9429#2 ATTTCTCATTTCACTGTTTGCTTATTTATTCTTGATTTTCCATTTNNTNCGGNTTNCATT 334
consensus_9429#1 ACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAACAATT 347
* * *
consensus_9429#0 ATTCTAGTTACCGGTTGTTCAGGTACAAGATCTATGGAAATACTAAAAAGTTCAACTCCT 578
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 TNATTTNCTACTCATCAATTTAAATAAA-------------------------------- 362
consensus_9429#1 ACAGATATTTTTATTCAATATTAATTATAATTAACTTAACAGTATGATCATGATGATGAT 407
consensus_9429#0 AACAACATAAGACTTGTATTACGTGATCGTCCATTCGAACGTGTTATTACCGTGCATAAA 638
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 GATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAACAATG 467
consensus_9429#0 GACAGTTTAGGTGCAATTGGTATACAAGTTCGTAATGGTTTAATTAAAGCAATCGTTAAA 698
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 GAATGGTCCGTCGAA--------------------------------------------- 482
consensus_9429#0 GACTCAAGTGCTGCACGTAATGGTATATTAACTAATCATCAAATTATCGAAGTTAATGGA 758
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 CAAAATGTTGTTGGTTTAAAAGATAAAGATTTATTACAACTTATGGACGAATCAAAAACT 818
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 CCAATGAAAGTTACTATTATACCAAAGACATTTTATGATAAATTAACTAGAAGTCTTCCA 878
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 AGTGGACAATTACGATTACAAATGGATCGATCATTACCTTTTGTTTAAATTTATAAATAA 938
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 CAATTACAGATATTTTTATTCAATATTAATTATGATTAACTTAACAGTATGATCATGATG 998
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 ATGATGATGATGGTAGATGAATTGAAGTTTCTCTTTCCTACTGAATTTATTCATAATAAA 1058
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 CAATTGANTGATCCTTTTTACTTGNTTCTTTTGNTTTACTCTTCCAAAAANCCAATAACG 1118
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 AGCTATTTAATTTTGCTATACGAATCATTTTGCATGATTGNTAACAATGATGTTTGGTAA 1178
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 TAATTGGAAAGTATTATGATGACATTAATAANTGATTATAGTTAACATTGAATNTATTAN 1238
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 AAGTCATTGAGTACCATTNTACTCAAGNNCTATTATTANTACTACTACCTTTTCGATAGN 1298
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 ANTCACTGACNACNNANGGGNGAGTATTTCTCATTTCACTGNTTGNGTTACNTTACNNCT 1358
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 TGACTTTNCCATTTTCTTCCGGNTTTTATNTTNCGGNTTCCTNCTCATCAAGTTTGNAAN 1418
consensus_9429#3 ------------------------------------------------------------
consensus_9429#2 ------------------------------------------------------------
consensus_9429#1 ------------------------------------------------------------
consensus_9429#0 ANNCNGACCNATTGGCGTTANNNCANGNCNCACGCACNNCTCGNGGCANGGGGCC 1473
consensus_9429#3 -------------------------------------------------------
consensus_9429#2 -------------------------------------------------------
consensus_9429#1 -------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||