cluster # 9432

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Schistosoma mansoni
cluster # 9432 cluster # 9432 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9432#0 length = 727 sequences # 6
consensus_9432#1 length = 470 sequences # 1

consensus_9432#2 length = 387 sequences # 1
consensus_9432#3 length = 235 sequences # 1

consensusID : consensus_9432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 727
fasta sequence

                              [CCTCCATCAGTGGATAATACTATTAGATCGTTGCCCCACTAAACTTACCTCTACATCGGCGCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACACATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTACTAATTTTGGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CD141791             [CCTCCATCAGTGGATAATACTATTAGATCGTTGCCCCACTAAACTTACCTCTACATCGGCGCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACACATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATAC                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD082871             [                       TAGATCGTTGCCCCACTAAACTTACCTCTACATCGGCGCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACACATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCANACAGCAGTAATAGGAATGATGATTGGAA                                                                                                                                                        ]
[-] EMBL CD144944             [                                                                                                                                                                               GAAGAGCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGTTCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGT                                                                                                                                           ]
[-] EMBL CD076457             [                                                                                                                                                                                                                            CATATCGCTCTCAGAACGGTTCAAACTTCATG TTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCCCATATGGATTCCTACCCGGACTCCCCATTGCCCCAATATTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGGTTCGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTAAATCGGTTTGGGATGCGGCGGGATAGCAGGTTTTGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCCCTTTTACCCAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTTTAATAATTTACTAA                                      ]
[-] EMBL CD075777             [                                                                                                                                                                                                                                   CTCTCAGAACGGTTCAAACTTCATG TTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTACT                                        ]
[-] EMBL AI394998             [                                                                                                                                                                                                                                                                                                                                                                                                                                                          tGGCCACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACTCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTACTAATTTTGGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9432#0
CCTCCATCAGTGGATAATACTATTAGATCGTTGCCCCACTAAACTTACCTCTACATCGGC
GCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACA
CATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGA
GCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGT
TCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAA
ACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCT
ACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGA
AGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCG
TTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCC
AATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCA
GATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTT
CATTAGTTTCTTTTCTAATAATCTACTAATTTTGGTAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

consensusID : consensus_9432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [TGGTACGAGGAGCTCTCAGAACGGTTCAAACTTCATGTTTTTTGTAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC]

[+] EMBL CD082161             [TGGTACGAGGAGCTCTCAGAACGGTTCAAACTTCATGTTTTTTGTAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGTTAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC]




>consensus_9432#1
TGGTACGAGGAGCTCTCAGAACGGTTCAAACTTCATGTTTTTTGTAGCCATCATATGTGC
CCCGGTGATTACCTTGCTGTCAAAACCTAGAACTTTAAGGTGTTTAACCAGAAGATCAGT
TAAATTCGCCACATATGGATTCCTACCCGGACTCACCATTGCCCCAATACTAATGTATGC
TCGAATGAAAGATCAACCGGACGAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAA
CAAAAACCAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGC
AGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAAC
TGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATT
GGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC

consensusID : consensus_9432#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 387
fasta sequence

                              [CGTTACTACAATTTCCTACTAATCGGGATATCACAAAAATATATTTATTGTTAACTTTCAACCGAATGCTCAATTTATTTGAAACTATCCAGTCTTGGCATTGATACCTACAAATCCATATAATCACTCAGTAATTCTTTGGTTTTATAATTTTTTTAAAAATTAAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC]

[+] EMBL CD078617             [CGTTACTACAATTTCCTACTAATCGGGATATCACAAAAATATATTTATTGTTAACTTTCAACCGAATGCTCAATTTATTTGAAACTATCCAGTCTTGGCATTGATACCTACAAATCCATATAATCACTCAGTAATTCTTTGGTTTTATAATTTTTTTAAAAATTAAGCTTCGTGTAGATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGTTCATTAGTTTCTTTTCTAATAATCTAC]




>consensus_9432#2
CGTTACTACAATTTCCTACTAATCGGGATATCACAAAAATATATTTATTGTTAACTTTCA
ACCGAATGCTCAATTTATTTGAAACTATCCAGTCTTGGCATTGATACCTACAAATCCATA
TAATCACTCAGTAATTCTTTGGTTTTATAATTTTTTTAAAAATTAAGCTTCGTGTAGATC
GTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTGGGC
CAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGCTGTAATC
AGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTTGTGT
TCATTAGTTTCTTTTCTAATAATCTAC

consensusID : consensus_9432#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [TAATAACGATATGGGATGCGGCGGGATAACAGGTTTCGCCAATACAATTGGGCCAATGCAAACAGCAGTAATAGGAATGATGACTGGAACTGTAGCAACTATATGCATATAATCAGCTTAGAAGTAGCAAATATACACAGAAATAGATAATGGATGAATTCACTAATTTTGTGATCATTAGTATGGGGACCCAATAATCTAATAAGANTGGTAAAAGAAAAAAAAAAAACTAAAA]

[-] EMBL AI394848             [TAATAACGATATGGGATGCGGCGGGATAACAGGTTTCGCCAATACAATTGGGCCAATGCAAACAGCAGTAATAGGAATGATGACTGGAACTGTAGCAACTATATGCATATAATCAGCTTAGAAGTAGCAAATATACACAGAAATAGATAATGGATGAATTCACTAATTTTGTGATCATTAGTATGGGGACCCAATAATCTAATAAGANTGGTAAAAGAAAAAAAAAAAACTAAAA]




>consensus_9432#3
TAATAACGATATGGGATGCGGCGGGATAACAGGTTTCGCCAATACAATTGGGCCAATGCA
AACAGCAGTAATAGGAATGATGACTGGAACTGTAGCAACTATATGCATATAATCAGCTTA
GAAGTAGCAAATATACACAGAAATAGATAATGGATGAATTCACTAATTTTGTGATCATTA
GTATGGGGACCCAATAATCTAATAAGANTGGTAAAAGAAAAAAAAAAAACTAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9432#0      CCTCCATCAGTGGATAATACTATTAGATCGTTGCCCCACTAAACTTACCTCTACATCGGC 60
consensus_9432#1      ------------------------------------------------------------
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      ------------------------------------------------------------
                                                                                  

consensus_9432#0      GCATCCTAAGTGTTCAACGTTCTGTCATTTAAATAAACCTATTAACTCCGTAACGGTACA 120
consensus_9432#1      ------------------------------------------------------------
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      ------------------------------------------------------------
                                                                                  

consensus_9432#0      CATGTAGATGGGATCATTATGGGTAAAAAATGTTTTTAGTGTGCATTTAAGCGAGGAAGA 180
consensus_9432#1      ------------------------------------------------------------
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      ------------------------------------------------------------
                                                                                  

consensus_9432#0      GCTCCAAAGTATCCCACATTTAAAGATTGAACTGCTAACGCATATCGCTCTCAGAACGGT 240
consensus_9432#1      -----------------------------------TGGTACGAGGAGCTCTCAGAACGGT 25
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      ------------------------------------------------------------
                                                                                  

consensus_9432#0      TCAAACTTCATGTTTTTTTGGAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAA 300
consensus_9432#1      TCAAACTTCATGTTTTTT-GTAGCCATCATATGTGCCCCGGTGATTACCTTGCTGTCAAA 84
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      ------------------------------------------------------------
                                                                                  

consensus_9432#0      ACCTAGAACTTTAAGGTGTT--TAACCAGAAGATCAGTTAAATTCGCCACATATGGATTC 358
consensus_9432#1      ACCTAGAACTTTAAGGTGTT--TAACCAGAAGATCAGTTAAATTCGCCACATATGGATTC 142
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      ---CGTTACTACAATTTCCTACTAATCGGGATATCACAAAAATATATTTATTGTTAACTT 57
                                                                                  

consensus_9432#0      CTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGAC 418
consensus_9432#1      CTACCCGGACTCACCATTGCCCCAATACTAATGTATGCTCGAATGAAAGATCAACCGGAC 202
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      TCAACCGAATGCTCAATTTATTTGAAACTATCCAGTCTTGGCATTGATACCTACAAATCC 117
                                                                                  

consensus_9432#0      GAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACC--AGCTTCGTGTAG 476
consensus_9432#1      GAAGCATTTTACGACAGGTGCTATCGGCTACGATGCAACAAAAACC--AGCTTCGTGTAG 260
consensus_9432#3      ------------------------------------------------------------
consensus_9432#2      ATATAATCACTCAGTAATTCTTTGGTTTTATAATTTTTTTAAAAATTAAGCTTCGTGTAG 177
                                                                                  

consensus_9432#0      ATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTG 536
consensus_9432#1      ATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTG 320
consensus_9432#3      ----------TAATAACGATATGGGATGCGGCGGGATAACAGGTTTCGCCAATACAATTG 50
consensus_9432#2      ATCGTTTCAGTTATATCGGTTTGGGATGCGGCGGGATAGCAGGTTTCGCCAACGCATTTG 237
                                * *** ** * ***************** *************  ** ***

consensus_9432#0      GGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGC-TGT 595
consensus_9432#1      GGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGC-TGT 379
consensus_9432#3      GGCCAATGCAAACAGCAGTAATAGGAATGATGACTGGAACTGTAGCAACTATATGCATAT 110
consensus_9432#2      GGCCAATGCAAACAGCAGTAATAGGAATGATGATTGGAACTGTAGCAGCTGTTTGC-TGT 296
                      ********************************* ************* ** * *** * *

consensus_9432#0      AATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTT 655
consensus_9432#1      AATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTT 439
consensus_9432#3      AATCAGCTTAGAAGTAGCAAATATACACAGAAATAGATAATGGATGAATTCACTAATTTT 170
consensus_9432#2      AATCAGATTAAAAGTAGCACTTCTACACAGAAATAGATATTGGATGTTTTCGCTAAACTT 356
                      ****** *** ********  * **************** ******  *** ****  **

consensus_9432#0      GTGTTCATTAGTTTCTTT-TCTAATAATCTACTAATTTTGGTAGAAAAAAAAAAAAAAAA 714
consensus_9432#1      GTGTTCATTAGTTTCTTT-TCTAATAATCTAC---------------------------- 470
consensus_9432#3      GTGATCATTAGTATGGGGACCCAATAATCTAATAAGANTGGTAAAAGAAAAAAAAAAAAC 230
consensus_9432#2      GTGTTCATTAGTTTCTTT-TCTAATAATCTAC---------------------------- 387
                      *** ******** *      * *********                             

consensus_9432#0      AAAAAAAAAAAAA 727
consensus_9432#1      -------------
consensus_9432#3      TAAAA-------- 235
consensus_9432#2      -------------