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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 624 fasta sequence
[CTCTCACGATCCTTCC-CTCTCTCACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCA-GGCACATATACCAATTATCTGAACCTGCGGTTCCT-CTC--GTAC-TAAACA-GGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAA--GGAC-GCGATC-CTCTAGAAATTAGATATCGTGTCGACCCCCGTACCCCANAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCANAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTA]
[+] EMBL CD086765 [CTCTCACGATCCTTCC CTCTCTCACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGC ]
[+] EMBL CD061545 [ acccttaTTCCGGTGTCTTACGCTCATACCACAA TAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACTAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTACAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGGCTTTCGACCAGGGCACATTTACCAATTATCTGAACCTGCGGTTCCTCCTCCGGTACTTAAACAGGGATTACCATAGCAACGGACAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCC ]
[+] EMBL CD061660 [ tagcgAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCA GGCACATATACCAATTATCTGAACCTGCGGTTCCT CTC GTAC TAAACA GGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAA GGACAGCGATC CTCTAGA ]
[+] EMBL CD092810 [ ATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGGCACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCA GGCACATATACCAATTATCTGAACCTGCGGTTCCT CTC GTAC TAAACA GGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTTAGTGGAC GCGCTCAGACCA CAATTAGATATCGTGTCGACCCCCGTACCCCANAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCANAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTA]
consensusID : consensus_9433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 620 fasta sequence
[GCACGAGGTTAGGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAATCATTACTTCAAGCAGGGATAGGATTCAATGCCTCGCAGTGTGAAAGCTGTTCGAGCACTTACGTTTCCCCGACAAAACATTAAGTCTTCTACAAACGATTTAGTTTCCTTACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGGGATCCTCTAG-AGAAGACTGCAGGCGATG]
[+] EMBL AI976286 [GCACGAGGTTAGGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAATCATTACTTCAAGCAGGGATAGGATTCAATGCCTCGCAGTGTGAAAGCTGTTCGAGCACTTACGTTTCCCCGACAAAACATTAAGTCTTCTACAAACGATTTAGTTTCCTTACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTTCCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTCCCGTTGCAAATTTGGACGGGATTCATACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTTGACCAGGCACATA ]
[-] EMBL CD062335 [ ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGGGATCCTCTAG AGAAGACTGCAGGCGATG]
[-] EMBL CD062378 [ ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACAAGTCTCACGACGGTCTAAACCCAGCTCAGGGGGTTCTTTAGAAGACGA ]
consensusID : consensus_9433#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAGTTTGGACGGGATTCAGACTTAGAGGCGTTCAGCCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAAGGACGGGGATCCTTCTAGAGTCGNACCTGCCA]
[-] EMBL CD062315 [ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCCAGTCCAGACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGTACCGTTGCAAGTTTGGACGGGATTCAGACTTAGAGGCGTTCAGCCTTAATCCCTCAGATGGTAGCTTCGCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGGTTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCAGATTGTACTTCACTGATGTACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTAAGGACGGGGATCCTTCTAGAGTCGNACCTGCCA]
consensusID : consensus_9433#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[CAGCGTGCAAACGTGTAGATGGTAACGTCGTGAATCGATTAATAAAGCACTACCAACTAACTCCTTTCCTTCCACCATCAATGTTATTCTTGTTCCTTGATATTATATCGAGAATAATATTTGAAACACATATTTCTTGATCCGCTAACCACATGAAATGGGCAAAGAATAAGGGTCATCAAAAGACAATAATGTGGTTTGAATTTGAAAATCACCAGTTACAGTGTGAGTTGACATCTGACTGAGAGACCAGGTGAGTGGGCGAGTTGGTGCATTGTGTTATGGAGCACATATTGGTGTAATGATGTCAATGAACCATCTNTCGACTGATGACTNTGTCATCTNG]
[+] EMBL CD171244 [CAGCGTGCAAACGTGTAGATGGTAACGTCGTGAATCGATTAATAAAGCACTACCAACTAACTCCTTTCCTTCCACCATCAATGTTATTCTTGTTCCTTGATATTATATCGAGAATAATATTTGAAACACATATTTCTTGATCCGCTAACCACATGAAATGGGCAAAGAATAAGGGTCATCAAAAGACAATAATGTGGTTTGAATTTGAAAATCACCAGTTACAGTGTGAGTTGACATCTGACTGAGAGACCAGGTGAGTGGGCGAGTTGGTGCATTGTGTTATGGAGCACATATTGGTGTAATGATGTCAATGAACCATCTNTCGACTGATGACTNTGTCATCTNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9433#0 ------------------------------------------------------------
consensus_9433#2 ------------------------------------------------------------
consensus_9433#1 GCACGAGGTTAGGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTT 60
consensus_9433#3 ------------------------------------------------------------
consensus_9433#0 ------------------------------------------------------------
consensus_9433#2 ------------------------------------------------------------
consensus_9433#1 TTTTTTCAAATCATTACTTCAAGCAGGGATAGGATTCAATGCCTCGCAGTGTGAAAGCTG 120
consensus_9433#3 ------------------------------------------------------------
consensus_9433#0 ------------------------------------CTCTCACGATC--CTTCCCTCTCT 22
consensus_9433#2 ------------------------------------------------------------
consensus_9433#1 TTCGAGCACTTACGTTTCCCCGACAAAACATTAAGTCTTCTACAAACGATTTAGTTTCCT 180
consensus_9433#3 ------------------------------------------------------------
consensus_9433#0 CACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGG 82
consensus_9433#2 ------------ACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGG 48
consensus_9433#1 TACGCTCATACCACAATTAGATATCGTGTCGACCCCCGTACCCCAAAATCCGGAGCACGG 240
consensus_9433#3 ---------------------CAGCGTGCAAACGTGTAGATGGTAACGTCGTGAAT-CGA 38
* **** ** * ** ** ** **
consensus_9433#0 TTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCC 142
consensus_9433#2 TTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCC 108
consensus_9433#1 TTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGAACACATGGTCC 300
consensus_9433#3 TTAATAA--AGCACTACCAACTAACTCCTTTCCTTCCACCATCAATGTTATTCTTGTTCC 96
** ** * * ** **** ** *** * * * ** ***
consensus_9433#0 AGTCCAG-ACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGT 201
consensus_9433#2 AGTCCAG-ACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGT 167
consensus_9433#1 AGTCCAG-ACACCAAAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGATACAGAATGT 359
consensus_9433#3 TTGATATTATATCGAGAATAATATTTGAAACACATATTTCTTGATCCGCTAACCACATGA 156
* * * * * * **** * * * * ** ** ***
consensus_9433#0 ACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATG 261
consensus_9433#2 ACCGTTGCAAGTTTGGACGGGATTCAGACTTAGAGGCGTTCAGCCTTAATCCCTCAGATG 227
consensus_9433#1 ACCGTTGCAAATTTGGACGGGATTCAGACTTAGAGGCGTTCAGTCTTAATCCCTCAGATG 419
consensus_9433#3 AATGGGCAAAGAATAAGGGTCATCAAAAGACAATAATGT--GGTTTGAATTTGAAAATCA 214
* * ** * * ** * * * ** * * *** *
consensus_9433#0 GTAGCTTC-GCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGG 320
consensus_9433#2 GTAGCTTC-GCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGG 286
consensus_9433#1 GTAGCTTC-GCACCATTGGCCTTTCGACCAGGCACATATACCAATTATCTGAACCTGCGG 478
consensus_9433#3 CCAGTTACAGTGTGAGTTGACATCTGACTGAG-AGACCAGGTGAGTGGGCGAGTTGGTGC 273
** * * * * * * * * *** * * * * * ** * *
consensus_9433#0 TTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCA--GATTGTACTTC-ACTGATG 377
consensus_9433#2 TTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCA--GATTGTACTTC-ACTGATG 343
consensus_9433#1 TTCCTCTCGTACTAAACAGGATTACCATAGCAACGGCCA--GATTGTACTTC-ACTGATG 535
consensus_9433#3 ATTGTGTTATGGAGCACAT-ATTGGTGTAATGATGTCAATGAACCATCTNTCGACTGATG 332
* * * * *** *** ** * * * * * * ** *******
consensus_9433#0 TACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACG---T 434
consensus_9433#2 TACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACG---T 400
consensus_9433#1 TACTCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAGGGGAT 595
consensus_9433#3 ACTNTGTCATCTNG---------------------------------------------- 346
* * *
consensus_9433#0 TCCCTAAGGACGCG-ATCCTCTAGAAATTAGATATCGTGTCGACCCCCGTACCCCANAAT 493
consensus_9433#2 TCCCTAAGGACGGGGATCCTTCTAGAGTCGNACCTGCCA--------------------- 439
consensus_9433#1 CCTCTAGAGAAGA-----CTGCAGGCGATG------------------------------ 620
consensus_9433#3 ------------------------------------------------------------
consensus_9433#0 CCGGAGCACGGTTTATGGTCATCGCTCTGGCATAACACCAGACCTAATGGGCCTAGCCGA 553
consensus_9433#2 ------------------------------------------------------------
consensus_9433#1 ------------------------------------------------------------
consensus_9433#3 ------------------------------------------------------------
consensus_9433#0 ACACATGGTCCAGTCCAGACACCANAAGGAATACGTAAGCTTGCCCAGCCACGTGTCGGA 613
consensus_9433#2 ------------------------------------------------------------
consensus_9433#1 ------------------------------------------------------------
consensus_9433#3 ------------------------------------------------------------
consensus_9433#0 TACAGAATGTA 624
consensus_9433#2 -----------
consensus_9433#1 -----------
consensus_9433#3 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||