These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 778 fasta sequence [CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCAACACGTCACCTGGCACAATCAACAGACAATCTCGATATGCCAATCCAAAATCAAGTTCACAATCTCACATATACTCTATGTTGCATTCCTTCGTATTCACACTGTTTTTCACTGTCTCTTTTCTGTACGTTAGAACAAATCGCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGA--ATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGAC-GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAA-AGAGAGTTGGTGAACGTGACGGACAAACAGGGTGTA-GTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAG] [+] EMBL CD146502 [CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCAACACGTCACCTGGCACAATCAACAGACAATCTCGATATGCCAATCCAAAATCAAGTTCACAATCTCACATATACTCTATGTTGCATTCCTTCGTATTCACACTGTTTTTCACTGTCTCTTTTCTGTACGTTAGAACAAATCGCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCGTAAGTAGAAAACTCAAGTCAACTACATCGA ATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGGAC AACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAG AGACGAA CACTCTC GACCACTGGGCGAATCGACGA ACCTGGAGAA AGAGAG TGGTGAACGTGACGGACAAACAGGGTGTANNTTGTgg ] [-] EMBL CD134626 [ aCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGA ATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCGGGAGAAGAGGAGTTGGTGAACGTGAC GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAG A AGAG ] [-] EMBL CD134679 [ ACACACGNGTATCATCGTGACGCATGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGAACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCGTGATCCAATACCATCAATCCACACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCATC ACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAGCGTGAC GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGATTCGACAAACCACACTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAG GAGTTGGTGAGCGTGACGGACAAACAGGGTGTA GTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAG] [+] EMBL CD146486 [ CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGA ATCGACGACACCTGGAGAAGAGGAGTCGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAAAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGAC GGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAG GAGTTGGTGAACGTGACGGACAAACAGGGTGTA GTTGTTGGTCAGGAGA ] consensusID : consensus_9435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 606 fasta sequence [TTGATCCTGGCCATAGCTTGATCCTTGCTGCTTCTCCTCCTCGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA] [+] EMBL CD096842 [TTGATCCTGGCCATAGCTTGATCCTTGCTGCTTCTCCTCCTCGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAA ] [-] EMBL CD134174 [ GTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTATACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTAGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATCCCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCATTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGA ] [+] EMBL CD087492 [ ACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAGCGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA] consensusID : consensus_9435#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CGGTACCCTGGGCAAGGGTGGAAAATCAGGAAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTGATCGTCTTACCAGTCAACGTCTTCGCAAATATTTGCATTCCACCACGTAGACGAAGGACAAGACGCAGAGTCGACTCTTTCTGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGCTGTAGTCAG] [+] EMBL CD168067 [CGGTACCCTGGGCAAGGGTGGAAAATCAGGAAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAATGTGATCGTCTTACCAGTCAACGTCTTCGCAAATATTTGCATTCCACCACGTAGACGAAGGACAAGACGCAGAGTCGACTCTTTCTGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGCTGTAGTCAG] consensusID : consensus_9435#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [TGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGGAACGAAGGAGGATACGACAAACCACACTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAGGAGGTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACCAACAACGTTTGATCTTCGCTGGTAGGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCT] [+] EMBL CD144597 [TGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGGAACGAAGGAGGATACGACAAACCACACTCGGACCACAGGGCGAATCGACGACACCTGGAGAAGAGGAGGTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCAGGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACCAACAACGTTTGATCTTCGCTGGTAGGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9435#0 CTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGACCAACACGT 60 consensus_9435#3 ------------------------------------------------------------ consensus_9435#1 ------------------------------------------------------------ consensus_9435#2 ------------------------------------------------------------ consensus_9435#0 CACCTGGCACAATCAACAGACAATCTCGATATGCCAATCCAAAATCAAGTTCACAATCTC 120 consensus_9435#3 ------------------------------------------------------------ consensus_9435#1 ------------------------------------------------------------ consensus_9435#2 ------------------------------------------------------------ consensus_9435#0 ACATATACTCTATGTTGCATTCCTTCGTATTCACACTGTTTTTCACTGTCTCTTTTCTGT 180 consensus_9435#3 ------------------------------------------------------------ consensus_9435#1 ----------------------------------------TTGATCCTGGCCATAGCTTG 20 consensus_9435#2 ------------------------------------------------------------ consensus_9435#0 ACGTTAGAACAAATCGCTCAGCCAACACCACACAACACACACCGGTATCATCGTGACGCA 240 consensus_9435#3 ------------------------------------------------------------ consensus_9435#1 ATCCTTGCTGCTTCTCCTCCTCGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTG 80 consensus_9435#2 ------------------------------------------------------------ consensus_9435#0 TGACCGATAGGATCGCTTCACTAGACCACATCATATGTCCACATTGCCAATCGCTGATGA 300 consensus_9435#3 ------------------------------------------------------------ consensus_9435#1 CATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTC 140 consensus_9435#2 ------------------------------------------------------------ consensus_9435#0 ACCACAAACTACTCAATCTCTCTCTCCCTCTCGCTTCCTGATCCAATACCATCAATCCAC 360 consensus_9435#3 ------------------------------------------------------------ consensus_9435#1 AGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGG 200 consensus_9435#2 -----------------------------CGGTACCCTGGG-CAAGGGTGGAAAATCAGG 30 consensus_9435#0 ACACTATCACCTCACAATTACTCATAAGTAGAAAACTCAAGTCAACTACATCGAATCGAC 420 consensus_9435#3 ------------------------------------------------------------ consensus_9435#1 A-GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATC-ACTAGGC 258 consensus_9435#2 AAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATC-ACTAGGC 89 consensus_9435#0 GACACCTGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCA 480 consensus_9435#3 --------------------TGGTGAACGTGACGGACAAACAGGGTGTAGTTGTTGGTCA 40 consensus_9435#1 TCCACCTCCA-------ACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCAT 311 consensus_9435#2 TCCACCTCCA-------ATGTGATCGTCTTACCAGTCAACGTCTTCGCAAATATTTGCAT 142 ** * * * * * *** * * ** * consensus_9435#0 GGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAATCGACGACACC 540 consensus_9435#3 GGAGGAACGAAGGAGGATACGACAAACCACACTCGGACCACAGGGCGAATCGACGACACC 100 consensus_9435#1 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 371 consensus_9435#2 TCCACCACGTAGACGAAGGACAAGACGCAGAGTCGACTCTTTCTG-ATGTTGTAGTCAGA 201 *** ** * * * * ** *** * * * * * ** consensus_9435#0 TGGAGAAGAGGAGTTGGTGAACGTGACGGACAAACAGGGTGTA--GTTGTTGGTCAGGAG 598 consensus_9435#3 TGGAGAAGAGGAGGTGGTGAACGTGACGGACAAACAGGGTGTA--GTTGTTGGTCAGGAG 158 consensus_9435#1 CAGAGTACGTCCATCTTCCAAC-TGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAG 430 consensus_9435#2 CAGAGTACGTCCATCTTCCAAC-TGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGAG 260 *** * *** ** ** * * * * *************** consensus_9435#0 AAACGAAGGAGGAGAAGACGAAC--CACTCTCGGACCACTGGGCGAATC----GACGACA 652 consensus_9435#3 AAACGAAGGAGGAGAAGACGAAC--CACTCTCGGACCACTGGGCGAATC----GACGACA 212 consensus_9435#1 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 490 consensus_9435#2 GAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCA 320 ** * ** * * ** ** * * *** * * ** consensus_9435#0 CCTGGAGAAAGAGAGTTGGTGAACGTGACGGACAAACAGG-GTGTAGTT---GTTGGTCA 708 consensus_9435#3 CCTGGAGAAGAGGAGTTGGTGAACGTGACGGACCAACAAC-GTTTGATCTTCGCTGGTAG 271 consensus_9435#1 CCTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATTCCACCACGTA 550 consensus_9435#2 CCTCCAACGTGATCGTCTTACCAGTCAATGTCTTCACAAATATTTGCATTCCACCACGTA 380 *** * ** * * * *** * * consensus_9435#0 GGAGAAACGAAGGAGGAGAAGACGAACCACTCTCGGACCACAGGGCGAATCGACG--ACA 766 consensus_9435#3 GCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCA 331 consensus_9435#1 GACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA---- 606 consensus_9435#2 GACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGCTGTAGTCAG------------ 428 * * * * consensus_9435#0 CCTGGAGAAGAG--- 778 consensus_9435#3 TCTTGTCCTTCGTCT 346 consensus_9435#1 --------------- consensus_9435#2 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||